Gcaud2475.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2475.t1
Unique NameGcaud2475.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length230
Homology
BLAST of Gcaud2475.t1 vs. uniprot
Match: A0A2V3J2C8_9FLOR (Transmembrane emp24 domain-containing protein 10 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2C8_9FLOR)

HSP 1 Score: 362 bits (930), Expect = 3.250e-125
Identity = 177/228 (77.63%), Postives = 203/228 (89.04%), Query Frame = 0
Query:    2 GKRASSVLLVLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGETRVSGGKSDMDIDVWVTTMTGKVLYHKRAPDHGKFSFDTPRIERQHRPADEYEYEDEEEDTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVDRAAKATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMMLAILSLVVTIGTCAAQYKYYEGYFKQKKLC 229
             +R   + +  +L  AA+A+RFYLEPGQRRCFTEELPS +KVTG+TRVSGGKSDM IDVWVTT+ G+VLY+KRA DHGKFSF TP++ER+HRPAD+YEYE+EEE+TYR+CIEHQQKAGRVHPAGT+RAIEFNLDQAF G + D V+RAAKATDTDRLQKSLR+MHTSLSGMIGD+TRLQRRER LT +ME TT HV++LAI SL VTIG CAAQYKYYEGYFKQKKLC
Sbjct:    3 NRRVILLFVAFNLFVAANAIRFYLEPGQRRCFTEELPSGSKVTGQTRVSGGKSDMPIDVWVTTLQGRVLYNKRAEDHGKFSFITPKVEREHRPADDYEYEEEEEETYRICIEHQQKAGRVHPAGTRRAIEFNLDQAFGGVSED-VERAAKATDTDRLQKSLRQMHTSLSGMIGDLTRLQRRERNLTARMEHTTGHVLVLAIFSLTVTIGICAAQYKYYEGYFKQKKLC 229          
BLAST of Gcaud2475.t1 vs. uniprot
Match: A0A1X6NTR7_PORUM (GOLD domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTR7_PORUM)

HSP 1 Score: 159 bits (401), Expect = 9.520e-45
Identity = 93/231 (40.26%), Postives = 129/231 (55.84%), Query Frame = 0
Query:    6 SSVLLVLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGETRVSGGKSDMDIDVWVTTMTGKVLYHKRAPDHGKFSFDTPR---IERQHRPADEYEYEDE-----EEDTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVDRAAKATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMMLAILSLVVTIGTCAAQYKYYEGYFKQKKL 228
            ++ L++L     A AV FYL PGQRRCFTE+LP +T + GE  +S G   M++DVWV T  G+VL+H+R   HGKFSF TP    ++   RP +E E +++     EED Y+VCIEHQ     +H  GTKR + F LD   +   T G   AAK  D D + ++L  MH +L  M   +  L  RE+ L +  E T   V   + +  +V + T A Q  Y + Y K KK+
Sbjct:   16 AAALVLLVTAPPATAVHFYLLPGQRRCFTEDLPLNTLIKGEASISTGTGYMELDVWVITKNGRVLFHRRKTHHGKFSFTTPEHPDVDHS-RPREEDEDDEDNLYGSEEDNYQVCIEHQDHPDAIHDHGTKRLVSFRLDHDGSYDPTGGRSTAAKGKDVDGVVRALEDMHHTLLSMKNQLDTLHWREKRLAKANEGTNERVAWYSSVGFLVLLATGAYQSFYMKRYLKSKKI 245          
BLAST of Gcaud2475.t1 vs. uniprot
Match: A0A5J4Z3Y7_PORPP (Transmembrane protein Tmp21 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3Y7_PORPP)

HSP 1 Score: 84.3 bits (207), Expect = 4.730e-16
Identity = 67/240 (27.92%), Postives = 106/240 (44.17%), Query Frame = 0
Query:    5 ASSVLLVLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGETRVSGGKSDMDIDVWVTTMTGKVLYHKRAPDHGKFSFDTP--RIERQHRP----------ADEYEYEDEEE----DTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVDRAAKATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMMLAILSLVVTIGTCAAQYKYYEGYFKQKKL 228
            A  VL+ ++ + +  A+RF L+ G  RCFTE     + V GE  V+ GK  M +D+ +   +G V++ K+  DHGKF F T   R  R HR            D++ Y D+EE      YR+C+    K+     A  K A      +   GS     D  AK      L+ +LR M+  +S ++ D+                    V+  +++S +V +   A Q  + + Y K +KL
Sbjct:   16 ALGVLIAVTSLSSVHAIRFMLDRGTERCFTETFSDHSTVMGEYLVATGKGHMSVDLEIMDDSGGVIFTKKDVDHGKFEFQTHSRRDGRGHRGHMRDPDDNPYMDDFYYYDDEELWAAPKYRLCV----KSPEAEDADDKAASRRVSLKILTGSVAKDYDSLAKEEHLSELEVTLRAMNDEVSDLVKDLEXXXXXXXXXXXXXXXXXXXVVTFSVVSCLVMLVVGAYQVFFMKNYLKARKL 251          
BLAST of Gcaud2475.t1 vs. uniprot
Match: F5HEJ5_CRYNB (GOLD domain-containing protein n=11 Tax=Cryptococcus TaxID=5206 RepID=F5HEJ5_CRYNB)

HSP 1 Score: 74.3 bits (181), Expect = 1.300e-12
Identity = 61/238 (25.63%), Postives = 100/238 (42.02%), Query Frame = 0
Query:    1 MGKRASSVLLVLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGETRV-------SGGKSDMDIDVWVTT---MTGKVLYHKRAPDHGKFSFDTPRIERQHRPADEYEYEDEEEDTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVDRAAKATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMMLAILSLVVTIGTCAAQYKYYEGYFKQKKL 228
            M  R S  L  L L+  A+A+ FY E  ++RCF EELPS T V G  +           K D  + + VT     T  ++   R P  G+F+F +      H P D           + +C+      G +     K  ++ N+     GS+    D AA  T    L   +R +++ ++ +  +   ++  E       E T +  +  ++L + V IG    Q K+ + YF+ KKL
Sbjct:    1 MKMRISQALFALPLLSVANALHFYFESNEKRCFLEELPSQTIVEGHYKAFLWNENEKQWKKDEAMGIHVTVEELATSHIVVDTRGPPDGRFTFTS------HEPGD-----------HNICLHSNITGGWLSNEHIKMYLDLNV-----GSSR--FDNAADQTHVTTLSSKIRELNSKVADIQREQRYMREVEANFRDASERTNTRAVWWSLLQIAVLIGAAVWQMKHLKVYFEDKKL 214          
BLAST of Gcaud2475.t1 vs. uniprot
Match: A0A5M6C6R8_9TREE (GOLD domain-containing protein n=1 Tax=Kwoniella shandongensis TaxID=1734106 RepID=A0A5M6C6R8_9TREE)

HSP 1 Score: 73.6 bits (179), Expect = 2.500e-12
Identity = 60/233 (25.75%), Postives = 101/233 (43.35%), Query Frame = 0
Query:    6 SSVLLVLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGETRV-------SGGKSDMDIDVWVTT---MTGKVLYHKRAPDHGKFSFDTPRIERQHRPADEYEYEDEEEDTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVDRAAKATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMMLAILSLVVTIGTCAAQYKYYEGYFKQKKL 228
            S++LL L L+ A +A+ FY E  ++RCF EELPS T V G  +        +  K D ++ + V+     +G  + + R P  G+F+F +      H P D           + +C+      G +     K  ++ N+     GS+   V        T  L   LR ++T +  +  +   L+  E       E T S  +  ++  +VV +G    Q +Y + YF+ KKL
Sbjct:    6 SNILLALPLLSAVNALHFYFESNEKRCFLEELPSDTIVEGHYKAYLWNENANEWKMDQEMGIHVSVEELSSGHTVVNTRGPPDGRFTFTS------HEPGD-----------HNICLHSNITGGWLSTQHIKLYLDINV-----GSSKPDVQSDLSHVST--LSSKLRDLNTKVEDIQREQRYLREVEATFRDASESTNSRAVWWSLAQIVVLVGAGVWQMRYLKVYFEDKKL 214          
BLAST of Gcaud2475.t1 vs. uniprot
Match: M2W7Y6_GALSU (Emp24/gp25L/p24 family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W7Y6_GALSU)

HSP 1 Score: 72.0 bits (175), Expect = 1.310e-11
Identity = 63/231 (27.27%), Postives = 102/231 (44.16%), Query Frame = 0
Query:    6 SSVLLVLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGETRVSGGKSDMDIDVWVTTMTGKVLYHKRAPDHGKFSFDTPRIERQHRPADEYEYEDEE--EDTYRVCIEHQQKAGRVHPAG------TKRAIEFNLDQAFAGSATDGVDRAAKATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMMLAILSLVVTIGTCAAQYKYYEGYFKQKKL 228
            S V + L  I  + A  FYL    + CFTE+L S+TKV+GE  V+G +  M +D+ V     +  + K   + G+F+F TP+     +P D     DE      Y  C   +     +          T+R +   +D     +  D   R AK    + L+ +LRR+   +     ++  L  RE+ +    E T S V  L I +++V I     +  + + YF+ KKL
Sbjct:   11 SLVFIFLLYIQTSIAFEFYLNKNAKLCFTEQLTSNTKVSGEYAVAGSEGTMSVDLTVIGPDRRDYFSKLGIESGRFTFKTPKHPIL-KPEDAKYAADEHFPPAVYHFCFSARSLPENIEANAHQPQVVTRRRVSLKVD--VLPTERDYA-RLAKEEHLNSLEVALRRIEDEIRQFSNELDILSSREQTMRNINEITNSRVTWLGIFNVLVMIAAGIYEMYHMKNYFRHKKL 237          
BLAST of Gcaud2475.t1 vs. uniprot
Match: L1JFZ5_GUITC (GOLD domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JFZ5_GUITC)

HSP 1 Score: 69.7 bits (169), Expect = 5.440e-11
Identity = 58/214 (27.10%), Postives = 93/214 (43.46%), Query Frame = 0
Query:   11 VLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGE---TRVSGGKSDMDIDVWVTTMTGKVLYHKRAPDHGKFSFDTPRIERQHRPADEYEYEDEEEDTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVD-----RAAKATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMMLAILSLVVTIGTCAAQY 216
            +LSL+    A++F L  G+ +CF+E+LPS+T VTG+     +  G+++M I++ VT    K++Y K     GKF+F T                      Y VC  +            K  +EF   +  +     G+D     +  K      +Q +LR M   L+ +       ++RE  L    E T S VM   + +++V IGT   QY
Sbjct:    7 LLSLLTVTTALKFDLPSGKVKCFSEDLPSNTLVTGDFAAEAIPDGQNNMPIEIQVTDPFEKIIYTKDDISQGKFAFTTATT-----------------GDYIVCFHN------------KGGLEFMTQRRVSLVLKHGIDARDYSQVMKEEHLSGVQGALREMEDRLTEIRQQFVSERKREEYLRDLTETTCSRVMWFGVFTVLVCIGTSMIQY 191          
BLAST of Gcaud2475.t1 vs. uniprot
Match: A0A1E3HG04_9TREE (GOLD domain-containing protein n=4 Tax=Cryptococcus TaxID=5206 RepID=A0A1E3HG04_9TREE)

HSP 1 Score: 66.6 bits (161), Expect = 8.400e-10
Identity = 56/235 (23.83%), Postives = 102/235 (43.40%), Query Frame = 0
Query:    4 RASSVLLVLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGETRV-------SGGKSDMDIDVWVTT---MTGKVLYHKRAPDHGKFSFDTPRIERQHRPADEYEYEDEEEDTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVDRAAKATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMMLAILSLVVTIGTCAAQYKYYEGYFKQKKL 228
            + + V L L L+ A +A+ FY E  ++RCF EELPS T V G  +        +  K +  + + VT     +G  + + R P  G+F+F +      H P D           + +C+      G +     K  ++ N+     GSA   +D++   +    L   +R ++  ++ +  +   L+  E       E T +  +  ++L +VV I     Q ++ + YF+ KKL
Sbjct:    2 KLAQVFLALPLLSAVNALHFYFESDEKRCFLEELPSETIVEGHYKAFLWDEQQNQWKPEEAMGIHVTVDELSSGHNVVNTRGPPDGRFTFTS------HEPGD-----------HNICLHSNITGGWLSNQHIKMYLDLNV-----GSAK--IDQSDDKSHVTTLSSKIRELNVKVADIQREQRYLREVEADFRNASESTNARAVWWSLLQIVVLIAAAGWQMRHLKVYFEDKKL 212          
BLAST of Gcaud2475.t1 vs. uniprot
Match: UPI001E8DFD6E (putative ER to Golgi transport-related protein n=1 Tax=Filobasidium floriforme TaxID=5210 RepID=UPI001E8DFD6E)

HSP 1 Score: 65.1 bits (157), Expect = 3.310e-9
Identity = 68/243 (27.98%), Postives = 103/243 (42.39%), Query Frame = 0
Query:   11 VLSLIFAA-------DAVRFYLEPGQRRCFTEELPSSTKVTGETR----VSGGKS-----DMDIDVWVTTM-TGKVLYHKRAPDHGKFSFDTPRIERQHRPADEYEYEDEEEDTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVDRAAKATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEET--------TSHVMMLAILSLVVTIGTCAAQYKYYEGYFKQKKL 228
            V+SLI+AA        A+ FYLE  ++RCF EELPS T V G  R    V   KS     +M I V V  + +G+V+ +      GKF+F +      H P D           + +C++    +G      +   I+  LD A       G  R   + DT  +Q    ++       + D     RRE+   R++E T            +  ++  +VV IG   A+ +Y + YF  KKL
Sbjct:    8 VISLIWAALLSAWTAQALHFYLESNEQRCFLEELPSDTVVEGHYRALEWVEENKSWEQSKEMGIQVVVEEVASGEVVANVHGKPEGKFTFTS------HEPGD-----------HSICLQSNSSSGYF----SSTHIKLYLDIAV------GTTRRDPSHDTGHIQTLASKLQD-----LNDRVSAVRREQQYQREIEATFRDASERVNGRAVWWSVWQIVVLIGVAVAEMRYLKHYFADKKL 218          
BLAST of Gcaud2475.t1 vs. uniprot
Match: A0A427XKX0_9TREE (Emp24p/erv25p-protein n=1 Tax=Apiotrichum porosum TaxID=105984 RepID=A0A427XKX0_9TREE)

HSP 1 Score: 64.7 bits (156), Expect = 4.200e-9
Identity = 59/235 (25.11%), Postives = 100/235 (42.55%), Query Frame = 0
Query:    4 RASSVLLVLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGETRVS---------GGKSDMDIDVWVTTM-TGKVLYHKRAPDHGKFSFDTPRIERQHRPADEYEYEDEEEDTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVDRAAKATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMMLAILSLVVTIGTCAAQYKYYEGYFKQKKL 228
            R +S+LL   L+ A  A+ FY +  ++RCF EELPS T V G  +             K D+ I V V  + +G ++ + R P  G+F+F +      H P D           + +C+      G +     K  ++ N+     GS+    D  A     + L   LR ++  ++ +  +   L+  E       E T S  +  ++  L V IG    Q ++ + +F+ KKL
Sbjct:    2 RLASLLLAAHLLSAVQALHFYFQSDEKRCFLEELPSETIVEGHYKALVWDEPANAWKTKPDLGIQVNVEDLNSGHMVVNTRGPSEGRFTFSS------HEPGD-----------HNICLNSNVTGGWMGTEHIKMYLDINV-----GSSKK--DFEADTEHVNTLASKLRDLNKKVADIQREQRYLREVEAEFRNASEATNSRTVWWSLGQLAVLIGMGVWQMRHLKVFFEDKKL 212          
The following BLAST results are available for this feature:
BLAST of Gcaud2475.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2C8_9FLOR3.250e-12577.63Transmembrane emp24 domain-containing protein 10 n... [more]
A0A1X6NTR7_PORUM9.520e-4540.26GOLD domain-containing protein n=1 Tax=Porphyra um... [more]
A0A5J4Z3Y7_PORPP4.730e-1627.92Transmembrane protein Tmp21 n=1 Tax=Porphyridium p... [more]
F5HEJ5_CRYNB1.300e-1225.63GOLD domain-containing protein n=11 Tax=Cryptococc... [more]
A0A5M6C6R8_9TREE2.500e-1225.75GOLD domain-containing protein n=1 Tax=Kwoniella s... [more]
M2W7Y6_GALSU1.310e-1127.27Emp24/gp25L/p24 family protein n=1 Tax=Galdieria s... [more]
L1JFZ5_GUITC5.440e-1127.10GOLD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1E3HG04_9TREE8.400e-1023.83GOLD domain-containing protein n=4 Tax=Cryptococcu... [more]
UPI001E8DFD6E3.310e-927.98putative ER to Golgi transport-related protein n=1... [more]
A0A427XKX0_9TREE4.200e-925.11Emp24p/erv25p-protein n=1 Tax=Apiotrichum porosum ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 20..224
e-value: 2.8E-27
score: 106.6
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 20..224
e-value: 2.3E-33
score: 115.7
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 30..136
score: 12.459919
IPR015720Transmembrane emp24 domain-containing proteinPANTHERPTHR22811TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEINcoord: 8..227
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..196
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..20
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 220..229
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 197..219
NoneNo IPR availableTMHMMTMhelixcoord: 194..216

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1056_length_14488_cov_4.591929contigNODE_1056_length_14488_cov_4.591929:9032..9798 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2475.t1Gcaud2475.t1Gracilaria caudata M_176_S67 malemRNANODE_1056_length_14488_cov_4.591929 9032..9798 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2475.t1 ID=Gcaud2475.t1|Name=Gcaud2475.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=230bp
MGKRASSVLLVLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGETRVS
GGKSDMDIDVWVTTMTGKVLYHKRAPDHGKFSFDTPRIERQHRPADEYEY
EDEEEDTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVDRAA
KATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMML
AILSLVVTIGTCAAQYKYYEGYFKQKKLC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
IPR015720Emp24-like