Gcaud2475.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2475.t1
Unique NameGcaud2475.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1056_length_14488_cov_4.591929contigNODE_1056_length_14488_cov_4.591929:9032..9798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMC072CT
Preferred nameTMED10
PFAMsEMP24_GP25L
Max annot lvl2759|Eukaryota
KEGG koko:K20347,ko:K20352,ko:K20878
KEGG TC1.I.1.1.3,9.B.188,9.B.188.1.2
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001822,GO:0002790,GO:0003002,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0005886,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007154,GO:0007267,GO:0007275,GO:0007389,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009953,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0019222,GO:0019905,GO:0022607,GO:0023052,GO:0023061,GO:0030133,GO:0030134,GO:0030135,GO:0030136,GO:0030137,GO:0030140,GO:0030141,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030667,GO:0031090,GO:0031224,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0033116,GO:0034248,GO:0034613,GO:0034622,GO:0035459,GO:0035964,GO:0042175,GO:0042221,GO:0042588,GO:0042589,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043279,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044877,GO:0045055,GO:0045184,GO:0046662,GO:0046903,GO:0046907,GO:0048042,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048207,GO:0048208,GO:0048513,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050795,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051259,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060255,GO:0061024,GO:0061355,GO:0065003,GO:0065007,GO:0070727,GO:0070765,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072001,GO:0080090,GO:0090114,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098797,GO:0098805,GO:0098827,GO:0099503,GO:0198738,GO:1901698,GO:1902003,GO:1902991,GO:2000241
Evalue1.57e-23
EggNOG OGsKOG1691@1|root,KOG1691@2759|Eukaryota
EC2.7.11.1
Descriptionprotein transport
COG categoryT
BRITEko00000,ko01000,ko01001,ko02000,ko03036,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2475Gcaud2475Gracilaria caudata M_176_S67 malegeneNODE_1056_length_14488_cov_4.591929 9032..9798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2475.t1Gcaud2475.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1056_length_14488_cov_4.591929 9032..9798 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2475.t1.start1Gcaud2475.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1056_length_14488_cov_4.591929 9032..9034 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2475.t1.CDS1Gcaud2475.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1056_length_14488_cov_4.591929 9032..9157 +
Gcaud2475.t1.CDS2Gcaud2475.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1056_length_14488_cov_4.591929 9235..9798 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2475.t1.exon1Gcaud2475.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1056_length_14488_cov_4.591929 9032..9157 +
Gcaud2475.t1.exon2Gcaud2475.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1056_length_14488_cov_4.591929 9235..9798 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2475.t1.intron1Gcaud2475.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1056_length_14488_cov_4.591929 9158..9234 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2475.t1.stop1Gcaud2475.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1056_length_14488_cov_4.591929 9796..9798 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2475.t1 ID=Gcaud2475.t1|Name=Gcaud2475.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=230bp
MGKRASSVLLVLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGETRVS
GGKSDMDIDVWVTTMTGKVLYHKRAPDHGKFSFDTPRIERQHRPADEYEY
EDEEEDTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVDRAA
KATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMML
AILSLVVTIGTCAAQYKYYEGYFKQKKLC*
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spliced messenger RNA

>Gcaud2475.t1 ID=Gcaud2475.t1|Name=Gcaud2475.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=690bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:9032..9798+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGAAGCGAGCGTCCTCCGTACTCCTCGTGCTGAGCTTGATTTTTGC
TGCAGACGCAGTGCGCTTCTATTTGGAGCCCGGACAACGAAGATGTTTCA
CAGAGGAACTGCCATCATCAACCAAGGTAACCGGCGAGACGCGCGTTTCG
GGAGGAAAGAGCGACATGGATATTGATGTGTGGGTAACGACTATGACGGG
AAAAGTCTTGTATCATAAACGAGCGCCAGACCACGGGAAGTTCTCTTTCG
ATACACCAAGGATAGAACGCCAGCACAGACCTGCTgatgaatacgaatac
gaggatgaagaggaagacACATATCGTGTTTGTATAGAACATCAACAAAA
GGCTGGTCGCGTTCATCCCGCGGGAACAAAGCGTGCGATTGAGTTCAATT
TAGATCAAGCGTTTGCAGGTTCGGCAACAGACGGTGTAGACCGTGCCGCG
AAGGCGACTGATACCGACAGGCTGCAAAAGAGTCTGCGACGAATGCATAC
ATCATTGTCAGGAATGATAGGTGATATGACTAGACTGCAACGCAGAGAGC
GCATGCTCACTCGAAAAATGGAAGAAACTACTAGCCATGTAATGATGCTT
GCAATTCTTTCCCTGGTTGTGACGATTGGTACATGTGCTGCGCAATACAA
GTACTACGAGGGATACTTCAAGCAGAAGAAGTTATGTTGA
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protein sequence of Gcaud2475.t1

>Gcaud2475.t1 ID=Gcaud2475.t1|Name=Gcaud2475.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=230bp
MGKRASSVLLVLSLIFAADAVRFYLEPGQRRCFTEELPSSTKVTGETRVS
GGKSDMDIDVWVTTMTGKVLYHKRAPDHGKFSFDTPRIERQHRPADEYEY
EDEEEDTYRVCIEHQQKAGRVHPAGTKRAIEFNLDQAFAGSATDGVDRAA
KATDTDRLQKSLRRMHTSLSGMIGDMTRLQRRERMLTRKMEETTSHVMML
AILSLVVTIGTCAAQYKYYEGYFKQKKLC*
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mRNA from alignment at NODE_1056_length_14488_cov_4.591929:9032..9798+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2475.t1 ID=Gcaud2475.t1|Name=Gcaud2475.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=767bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:9032..9798+ (Gracilaria caudata M_176_S67 male)
ATGGGGAAGCGAGCGTCCTCCGTACTCCTCGTGCTGAGCTTGATTTTTGC
TGCAGACGCAGTGCGCTTCTATTTGGAGCCCGGACAACGAAGATGTTTCA
CAGAGGAACTGCCATCATCAACCAAGGTAAGCACTTGCACAACCAAGCTT
CCGCGGATAGTGTTGTGGAAAAGCTTGTCTGAGATCTGACCACCGCTTCC
CAGGTAACCGGCGAGACGCGCGTTTCGGGAGGAAAGAGCGACATGGATAT
TGATGTGTGGGTAACGACTATGACGGGAAAAGTCTTGTATCATAAACGAG
CGCCAGACCACGGGAAGTTCTCTTTCGATACACCAAGGATAGAACGCCAG
CACAGACCTGCTgatgaatacgaatacgaggatgaagaggaagacACATA
TCGTGTTTGTATAGAACATCAACAAAAGGCTGGTCGCGTTCATCCCGCGG
GAACAAAGCGTGCGATTGAGTTCAATTTAGATCAAGCGTTTGCAGGTTCG
GCAACAGACGGTGTAGACCGTGCCGCGAAGGCGACTGATACCGACAGGCT
GCAAAAGAGTCTGCGACGAATGCATACATCATTGTCAGGAATGATAGGTG
ATATGACTAGACTGCAACGCAGAGAGCGCATGCTCACTCGAAAAATGGAA
GAAACTACTAGCCATGTAATGATGCTTGCAATTCTTTCCCTGGTTGTGAC
GATTGGTACATGTGCTGCGCAATACAAGTACTACGAGGGATACTTCAAGC
AGAAGAAGTTATGTTGA
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Coding sequence (CDS) from alignment at NODE_1056_length_14488_cov_4.591929:9032..9798+

>Gcaud2475.t1 ID=Gcaud2475.t1|Name=Gcaud2475.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=690bp|location=Sequence derived from alignment at NODE_1056_length_14488_cov_4.591929:9032..9798+ (Gracilaria caudata M_176_S67 male)
ATGGGGAAGCGAGCGTCCTCCGTACTCCTCGTGCTGAGCTTGATTTTTGC
TGCAGACGCAGTGCGCTTCTATTTGGAGCCCGGACAACGAAGATGTTTCA
CAGAGGAACTGCCATCATCAACCAAGGTAACCGGCGAGACGCGCGTTTCG
GGAGGAAAGAGCGACATGGATATTGATGTGTGGGTAACGACTATGACGGG
AAAAGTCTTGTATCATAAACGAGCGCCAGACCACGGGAAGTTCTCTTTCG
ATACACCAAGGATAGAACGCCAGCACAGACCTGCTgatgaatacgaatac
gaggatgaagaggaagacACATATCGTGTTTGTATAGAACATCAACAAAA
GGCTGGTCGCGTTCATCCCGCGGGAACAAAGCGTGCGATTGAGTTCAATT
TAGATCAAGCGTTTGCAGGTTCGGCAACAGACGGTGTAGACCGTGCCGCG
AAGGCGACTGATACCGACAGGCTGCAAAAGAGTCTGCGACGAATGCATAC
ATCATTGTCAGGAATGATAGGTGATATGACTAGACTGCAACGCAGAGAGC
GCATGCTCACTCGAAAAATGGAAGAAACTACTAGCCATGTAATGATGCTT
GCAATTCTTTCCCTGGTTGTGACGATTGGTACATGTGCTGCGCAATACAA
GTACTACGAGGGATACTTCAAGCAGAAGAAGTTATGTTGA
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