Gcaud3433.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gcaud3433.t2
Unique Name	Gcaud3433.t2
Type	polypeptide
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	275

Homology

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BLAST of Gcaud3433.t2 vs. uniprot
Match: A0A2V3IQ39_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ39_9FLOR)

HSP 1 Score: 353 bits (905), Expect = 9.450e-118
Identity = 169/275 (61.45%), Postives = 217/275 (78.91%), Query Frame = 0

Query:    1 LDDFLSFAVDPTIAVYQVQCTELDALLTFSWTMSFNYPLPWRPRVSVSAQSTVTFSQSSSRATKVVDEWYTSPATLVSQALPKLTDVFWLYPSPHAETDRGQRKTLRKTFLYSIIYQAPLEEYRIRHTVQYFEQELIWAMPTLPEQAFEGGLRKLEQYSAVSPIALRL-----VDGDHP-LKDGSLLYEFALPIPTTLTGSSPLLAAFPDAESAQIVNIPRRLMAVSRFPGFGTKTQFKERLALLLNTLVKDNLISGDEDSLQFGGRNVWLRSYD 269
            LDDF +FAVDPTIAVYQVQ ++ +  L F+WT+SFNYPLPWRPRVS S  S+VT S  +S    + DEWYTSPATL++Q+LP++TD+FWLYPSPH+ETDRGQRK +R T  YSII+QAP  EYR+   V+Y+E ELIWAMP +P+ AFEGGLRKLEQYSAVSP+ALRL     ++GD    +D +L Y++ALP+PTTL GSS +L  FP A+ A ++N+PRRLMAV+RF GF T+T+ ++RL  L++ LV DN+I  DE S++FGGRNVW+R Y+
Sbjct:  110 LDDFFAFAVDPTIAVYQVQTSDDETQLQFNWTLSFNYPLPWRPRVSASGVSSVTLSSPTS-VEHIKDEWYTSPATLITQSLPRVTDMFWLYPSPHSETDRGQRKMIRSTSQYSIIHQAPCAEYRVLGQVEYYEHELIWAMPAIPKHAFEGGLRKLEQYSAVSPVALRLFEDFDLEGDRANAQDDTLTYQWALPVPTTLIGSSDVLVQFPMAKDAHVLNVPRRLMAVARFKGFSTRTEVQKRLKALVDALVADNVIPPDEQSVRFGGRNVWVRGYE 383

The following BLAST results are available for this feature:

BLAST of Gcaud3433.t2 vs. uniprot

BLAST of Gcaud3433.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IQ39_9FLOR	9.450e-118	61.45	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011256	Regulatory factor, effector binding domain superfamily	SUPERFAMILY	55136	Probable bacterial effector-binding domain	coord: 137..249

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:50919..51801 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3433.t2	Gcaud3433.t2	Gracilaria caudata M_176_S67 male	mRNA	NODE_17_length_79749_cov_4.367006 50919..51801 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gcaud3433.t2 ID=Gcaud3433.t2|Name=Gcaud3433.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=275bp
LDDFLSFAVDPTIAVYQVQCTELDALLTFSWTMSFNYPLPWRPRVSVSAQ
STVTFSQSSSRATKVVDEWYTSPATLVSQALPKLTDVFWLYPSPHAETDR
GQRKTLRKTFLYSIIYQAPLEEYRIRHTVQYFEQELIWAMPTLPEQAFEG
GLRKLEQYSAVSPIALRLVDGDHPLKDGSLLYEFALPIPTTLTGSSPLLA
AFPDAESAQIVNIPRRLMAVSRFPGFGTKTQFKERLALLLNTLVKDNLIS
GDEDSLQFGGRNVWLRSYDWAFVE*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011256	Reg_factor_effector_dom_sf