Gcaud3433.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3433.t2
Unique Name	Gcaud3433.t2
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	275

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_17_length_79749_cov_4.367006	contig	NODE_17_length_79749_cov_4.367006:50919..51801 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	313624.NSP_50
PFAMs	DUF2358
Max annot lvl	1117\|Cyanobacteria
Evalue	0.000783
EggNOG OGs	COG4319@1\|root,COG4319@2\|Bacteria,1G6NU@1117\|Cyanobacteria,1HNQ3@1161\|Nostocales
Description	conserved protein (DUF2358)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3433	Gcaud3433	Gracilaria caudata M_176_S67 male	gene	NODE_17_length_79749_cov_4.367006 50919..51882 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3433.t2	Gcaud3433.t2	Gracilaria caudata M_176_S67 male	polypeptide	NODE_17_length_79749_cov_4.367006 50919..51801 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3433.t2.stop1	Gcaud3433.t2.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_17_length_79749_cov_4.367006 50919..50921 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3433.t2.CDS1	Gcaud3433.t2.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 50919..50935 -
Gcaud3433.t2.CDS2	Gcaud3433.t2.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_17_length_79749_cov_4.367006 50994..51801 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3433.t2.exon1	Gcaud3433.t2.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 50919..50935 -
Gcaud3433.t2.exon2	Gcaud3433.t2.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_17_length_79749_cov_4.367006 50994..51801 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3433.t2.intron1	Gcaud3433.t2.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_17_length_79749_cov_4.367006 50936..50993 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3433.t2.start1	Gcaud3433.t2.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_17_length_79749_cov_4.367006 51799..51801 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_17_length_79749_cov_4.367006:50919..51801-
coding sequence from alignment at NODE_17_length_79749_cov_4.367006:50919..51801-

mRNA sequence

>Gcaud3433.t2 ID=Gcaud3433.t2|Name=Gcaud3433.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=275bp
LDDFLSFAVDPTIAVYQVQCTELDALLTFSWTMSFNYPLPWRPRVSVSAQ
STVTFSQSSSRATKVVDEWYTSPATLVSQALPKLTDVFWLYPSPHAETDR
GQRKTLRKTFLYSIIYQAPLEEYRIRHTVQYFEQELIWAMPTLPEQAFEG
GLRKLEQYSAVSPIALRLVDGDHPLKDGSLLYEFALPIPTTLTGSSPLLA
AFPDAESAQIVNIPRRLMAVSRFPGFGTKTQFKERLALLLNTLVKDNLIS
GDEDSLQFGGRNVWLRSYDWAFVE*

spliced messenger RNA

>Gcaud3433.t2 ID=Gcaud3433.t2|Name=Gcaud3433.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=825bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:50919..51801- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGGATGACTTTCTGTCGTTTGCGGTGGACCCTACCATTGCGGTGTATCA
GGTACAATGTACGGAGCTTGATGCGCTGCTCACGTTTTCTTGGACAATGT
CCTTCAATTATCCGCTGCCGTGGCGTCCTCGTGTGTCAGTATCTGCACAA
AGCACCGTGACCTTTTCACAGTCCTCATCAAGGGCCACTAAAGTTGTCGA
TGAATGGTACACCTCCCCTGCCACATTAGTCTCTCAAGCGCTTCCGAAAC
TCACCGATGTGTTTTGGTTATACCCATCCCCCCACGCCGAAACCGACCGC
GGACAACGCAAAACGCTTCGCAAAACCTTTTTGTACAGCATCATTTATCA
AGCACCGCTTGAAGAATACAGAATCCGTCACACTGTGCAATATTTTGAAC
AAGAGTTGATATGGGCCATGCCGACCTTACCGGAGCAAGCGTTTGAAGGC
GGCTTGCGAAAGCTGGAACAGTACTCGGCCGTTAGTCCCATTGCATTACG
TCTTGTGGACGGTGATCATCCGCTAAAGGATGGCTCTCTTTTGTATGAGT
TTGCGCTTCCAATACCCACCACGCTCACGGGAAGCAGTCCGCTCCTCGCT
GCGTTTCCCGACGCAGAGTCTGCGCAAATTGTAAATATCCCTCGACGACT
CATGGCTGTTTCTCGCTTTCCCGGATTTGGTACCAAAACGCAGTTTAAGG
AACGGTTGGCCTTGCTTTTGAACACTTTGGTGAAGGATAACCTTATCTCT
GGCGACGAAGACTCTCTTCAGTTTGGCGGACGCAATGTGTGGCTTCGGTC
GTATGATTGGGCATTCGTCGAGTGA

protein sequence of Gcaud3433.t2

>Gcaud3433.t2 ID=Gcaud3433.t2|Name=Gcaud3433.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=275bp
LDDFLSFAVDPTIAVYQVQCTELDALLTFSWTMSFNYPLPWRPRVSVSAQ
STVTFSQSSSRATKVVDEWYTSPATLVSQALPKLTDVFWLYPSPHAETDR
GQRKTLRKTFLYSIIYQAPLEEYRIRHTVQYFEQELIWAMPTLPEQAFEG
GLRKLEQYSAVSPIALRLVDGDHPLKDGSLLYEFALPIPTTLTGSSPLLA
AFPDAESAQIVNIPRRLMAVSRFPGFGTKTQFKERLALLLNTLVKDNLIS
GDEDSLQFGGRNVWLRSYDWAFVE*

mRNA from alignment at NODE_17_length_79749_cov_4.367006:50919..51801-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3433.t2 ID=Gcaud3433.t2|Name=Gcaud3433.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=883bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:50919..51801- (Gracilaria caudata M_176_S67 male)
TTGGATGACTTTCTGTCGTTTGCGGTGGACCCTACCATTGCGGTGTATCA
GGTACAATGTACGGAGCTTGATGCGCTGCTCACGTTTTCTTGGACAATGT
CCTTCAATTATCCGCTGCCGTGGCGTCCTCGTGTGTCAGTATCTGCACAA
AGCACCGTGACCTTTTCACAGTCCTCATCAAGGGCCACTAAAGTTGTCGA
TGAATGGTACACCTCCCCTGCCACATTAGTCTCTCAAGCGCTTCCGAAAC
TCACCGATGTGTTTTGGTTATACCCATCCCCCCACGCCGAAACCGACCGC
GGACAACGCAAAACGCTTCGCAAAACCTTTTTGTACAGCATCATTTATCA
AGCACCGCTTGAAGAATACAGAATCCGTCACACTGTGCAATATTTTGAAC
AAGAGTTGATATGGGCCATGCCGACCTTACCGGAGCAAGCGTTTGAAGGC
GGCTTGCGAAAGCTGGAACAGTACTCGGCCGTTAGTCCCATTGCATTACG
TCTTGTGGACGGTGATCATCCGCTAAAGGATGGCTCTCTTTTGTATGAGT
TTGCGCTTCCAATACCCACCACGCTCACGGGAAGCAGTCCGCTCCTCGCT
GCGTTTCCCGACGCAGAGTCTGCGCAAATTGTAAATATCCCTCGACGACT
CATGGCTGTTTCTCGCTTTCCCGGATTTGGTACCAAAACGCAGTTTAAGG
AACGGTTGGCCTTGCTTTTGAACACTTTGGTGAAGGATAACCTTATCTCT
GGCGACGAAGACTCTCTTCAGTTTGGCGGACGCAATGTGTGGCTTCGGTC
GTATGATTGTAAGGTTGGGTTTAATAGTAAAGGTGTTTTGAGCATGGCTA
TGTACGGAGGAAGTAGGGGCATTCGTCGAGTGA

Coding sequence (CDS) from alignment at NODE_17_length_79749_cov_4.367006:50919..51801-

>Gcaud3433.t2 ID=Gcaud3433.t2|Name=Gcaud3433.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=825bp|location=Sequence derived from alignment at NODE_17_length_79749_cov_4.367006:50919..51801- (Gracilaria caudata M_176_S67 male)
TTGGATGACTTTCTGTCGTTTGCGGTGGACCCTACCATTGCGGTGTATCA
GGTACAATGTACGGAGCTTGATGCGCTGCTCACGTTTTCTTGGACAATGT
CCTTCAATTATCCGCTGCCGTGGCGTCCTCGTGTGTCAGTATCTGCACAA
AGCACCGTGACCTTTTCACAGTCCTCATCAAGGGCCACTAAAGTTGTCGA
TGAATGGTACACCTCCCCTGCCACATTAGTCTCTCAAGCGCTTCCGAAAC
TCACCGATGTGTTTTGGTTATACCCATCCCCCCACGCCGAAACCGACCGC
GGACAACGCAAAACGCTTCGCAAAACCTTTTTGTACAGCATCATTTATCA
AGCACCGCTTGAAGAATACAGAATCCGTCACACTGTGCAATATTTTGAAC
AAGAGTTGATATGGGCCATGCCGACCTTACCGGAGCAAGCGTTTGAAGGC
GGCTTGCGAAAGCTGGAACAGTACTCGGCCGTTAGTCCCATTGCATTACG
TCTTGTGGACGGTGATCATCCGCTAAAGGATGGCTCTCTTTTGTATGAGT
TTGCGCTTCCAATACCCACCACGCTCACGGGAAGCAGTCCGCTCCTCGCT
GCGTTTCCCGACGCAGAGTCTGCGCAAATTGTAAATATCCCTCGACGACT
CATGGCTGTTTCTCGCTTTCCCGGATTTGGTACCAAAACGCAGTTTAAGG
AACGGTTGGCCTTGCTTTTGAACACTTTGGTGAAGGATAACCTTATCTCT
GGCGACGAAGACTCTCTTCAGTTTGGCGGACGCAATGTGTGGCTTCGGTC
GTATGATTGGGCATTCGTCGAGTGA