Gcaud8368.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8368.t1
Unique Name	Gcaud8368.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	782

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_163_length_42078_cov_4.640103	contig	NODE_163_length_42078_cov_4.640103:28522..30947 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8368	Gcaud8368	Gracilaria caudata M_176_S67 male	gene	NODE_163_length_42078_cov_4.640103 28522..36027 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8368.t1	Gcaud8368.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_163_length_42078_cov_4.640103 28522..30947 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8368.t1.start1	Gcaud8368.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_163_length_42078_cov_4.640103 28522..28524 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8368.t1.CDS1	Gcaud8368.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_163_length_42078_cov_4.640103 28522..30804 +
Gcaud8368.t1.CDS2	Gcaud8368.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_163_length_42078_cov_4.640103 30885..30947 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8368.t1.exon1	Gcaud8368.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_163_length_42078_cov_4.640103 28522..30804 +
Gcaud8368.t1.exon2	Gcaud8368.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_163_length_42078_cov_4.640103 30885..30947 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8368.t1.intron1	Gcaud8368.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_163_length_42078_cov_4.640103 30805..30884 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8368.t1.stop1	Gcaud8368.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_163_length_42078_cov_4.640103 30945..30947 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_163_length_42078_cov_4.640103:28522..30947+
coding sequence from alignment at NODE_163_length_42078_cov_4.640103:28522..30947+

mRNA sequence

>Gcaud8368.t1 ID=Gcaud8368.t1|Name=Gcaud8368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=782bp
MLFAFAATSADQRIHRIALRLAQWLGGLSISTVIFLFLLFIITIVLRRKG
YGVLLRFFTIIVYARPGARRFPHGCEVRITTRFIGFLISGCRGPWLDISA
ERFYMRMRPSLRPTPRLNRRWVSLVRFFSLGVAAMDRGYWSTLLRNVLTR
VFAFVVRGLRIRVDKVRVWKDGGSWECKAEQFVLEGGAFGVFGSQYTLSV
NELYVNVCKRPIADASPYPAIYAALVLRKGTEVNAYLDPRFFTLLRPRRL
AILDDLRLSIRARDVSWNAPGIFETSITHIDGELCPGYSRTLRSKLPPSA
PATKKPRKPGILRYWEGNGAIHGLSLRIITPLASRSDHDDLAFASVPLSS
MSVGGYGTKTHKITAGPENGFFTRVKSIRLEALGKAADERHEPMTRASIS
IQGCSAGSIAVDALSSTLYETQPIGSDVENSETDERRVESVENIEKIVAA
RPEFLLWVEDVTTAIDINCSKRHGMRLDFAGHGGVVALEPVGLVQLVNDM
RDFGLKYIGRPLRRQSSLSSMSADESPSALPSRSSTSSLYGADGEPRSLR
MMSDMRHWTVTILGHEPIGDGDTLALVLSCETMLLPQIDLFGSSFMRFKG
STTKIRLMHWSQWDHTTNFSCEEAKFDISRGIQVGKKVSLKSASIDWDMD
AQAGLACLPGLFRELKKLKFSRHTYGLDESDYDENLTASGAAKKQPVVSE
EQLRESRSRRRVKLLEELHTWELSGSDIEMVAMFPDGPKMGMSIGKLPSC
TLDSEIFCGQERFGKAANRYRYQKVKPNSVP*

spliced messenger RNA

>Gcaud8368.t1 ID=Gcaud8368.t1|Name=Gcaud8368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2346bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:28522..30947+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTTTGCATTCGCGGCGACGTCCGCTGACCAACGAATTCATCGAAT
AGCACTTCGTCTTGCTCAGTGGCTTGGCGGCCTTTCTATATCCACCGTTA
TCTTTCTCTTTCTGTTGTTCATCATTACCATTGTCCTGCGTCGTAAGGGT
TATGGCGTTCTTCTCAGGTTTTTTACCATCATAGTTTATGCACGTCCAGG
TGCTCGTCGATTTCCACACGGATGCGAGGTGCGCATCACCACTCGCTTTA
TTGGATTCCTTATTAGCGGTTGCAGAGGACCATGGCTGGATATATCTGCA
GAGCGCTTTTACATGCGAATGCGCCCATCGCTCCGACCCACGCCTCGACT
CAATCGCCGATGGGTGTCCCTTGTCAGGTTTTTCTCTCTTGGCGTAGCCG
CAATGGATAGAGGGTATTGGTCCACGCTTCTTCGAAATGTTCTTACTCGC
GTTTTTGCGTTTGTTGTTCGTGGTTTGAGAATACGGGTCGACAAAGTTCG
TGTCTGGAAAGACGGGGGATCCTGGGAGTGCAAGGCAGAACAGTTCGTGT
TGGAAGGGGGAGCATTCGGAGTTTTCGGCAGCCAGTACACTCTCTCTGTC
AACGAATTATACGTTAACGTGTGCAAGCGTCCAATTGCCGACGCGTCCCC
ATATCCCGCAATATATGCTGCTCTTGTGCTTCGTAAGGGAACTGAGGTCA
ACGCATATCTGGATCCTCGGTTCTTCACTCTGCTGCGCCCGAGGCGGCTT
GCAATACTAGATGATTTACGACTGTCGATTAGGGCTCGGGATGTATCATG
GAACGCGCCTGGAATTTTCGAAACGAGCATTACCCATATTGACGGTGAGC
TATGTCCGGGTTATTCTCGAACCTTGCGCTCAAAGCTACCGCCATCAGCA
CCTGCAACAAAGAAACCACGGAAGCCTGGCATTCTACGATATTGGGAAGG
GAACGGCGCGATTCACGGGCTTTCGCTTCGCATAATCACTCCGCTTGCAA
GTCGAAGCGATCATGACGATCTAGCGTTTGCGTCAGTCCCTTTATCCTCT
ATGTCCGTAGGTGGATATGGAACAAAGACGCACAAGATAACAGCGGGACC
AGAGAACGGATTTTTCACGCGCGTCAAGAGTATTCGGCTAGAGGCGTTAG
GAAAGGCTGCTGATGAACGACATGAGCCTATGACCCGTGCATCGATCTCT
ATCCAGGGATGCAGTGCAGGTTCCATTGCTGTTGATGCACTATCAAGCAC
TCTGTACGAAACCCAACCTATTGGTTCTGATGTAGAGAACAGCGAAACCG
ATGAACGTCGTGTTGAATCCGTTGAAAACATCGAAAAGATCGTTGCCGCA
AGGCCTGAATTTCTGCTTTGGGTTGAAGATGTCACAACAGCCATTGATAT
CAACTGCTCAAAAAGACATGGTATGCGTCTCGACTTTGCTGGTCACGGGG
GAGTTGTGGCACTAGAGCCTGTTGGTCTTGTACAGCTTGTGAATGACATG
CGTGACTTCGGTCTAAAGTATATTGGGAGGCCCTTGCGAAGGCAGAGTTC
TTTATCAAGCATGAGTGCTGATGAATCACCATCAGCCCTTCCTAGCAGAT
CGAGCACTAGCAGTCTCTATGGAGCTGATGGAGAGCCACGATCATTGCGA
ATGATGTCAGACATGCGCCACTGGACTGTTACTATTCTCGGTCACGAGCC
CATAGGCGACGGAGACACTCTGGCTTTGGTTCTTTCATGTGAAACAATGC
TTCTGCCTCAGATCGACTTGTTTGGTTCTTCTTTTATGCGCTTTAAAGGC
TCTACAACCAAAATTCGCTTAATGCATTGGAGTCAATGGGATCACACTAC
AAATTTTTCTTGCGAAGAGGCAAAGTTTGATATTAGTCGTGGGATTCAGG
TAGGGAAGAAAGTAAGTCTGAAATCTGCCTCCATCGATTGGGACATGGAT
GCCCAGGCAGGCCTCGCGTGTTTGCCAGGGCTGTTTCGAGAATTAAAGAA
GCTTAAATTCAGTCGACACACGTATGGTTTGGACGAATCCGATTATGACG
AGAATCTTACTGCAAGTGGCGCCGCCAAAAAGCAACCTGTGGTATCTGAA
GAACAGCTCAGGGAAAGCAGATCTCGAAGGAGAGTGAAGCTCCTAGAAGA
ACTGCACACGTGGGAACTTTCAGGATCTGACATTGAAATGGTTGCGATGT
TTCCGGATGGGCCGAAAATGGGCATGAGTATAGGGAAATTACCGTCCTGT
ACTTTGGACTCAGAAATATTTTGCGGCCAGGAAAGATTTGGAAAAGCGGC
GAATCGATATAGATATCAAAAGGTTAAGCCTAATTCTGTACCATGA

protein sequence of Gcaud8368.t1

>Gcaud8368.t1 ID=Gcaud8368.t1|Name=Gcaud8368.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=782bp
MLFAFAATSADQRIHRIALRLAQWLGGLSISTVIFLFLLFIITIVLRRKG
YGVLLRFFTIIVYARPGARRFPHGCEVRITTRFIGFLISGCRGPWLDISA
ERFYMRMRPSLRPTPRLNRRWVSLVRFFSLGVAAMDRGYWSTLLRNVLTR
VFAFVVRGLRIRVDKVRVWKDGGSWECKAEQFVLEGGAFGVFGSQYTLSV
NELYVNVCKRPIADASPYPAIYAALVLRKGTEVNAYLDPRFFTLLRPRRL
AILDDLRLSIRARDVSWNAPGIFETSITHIDGELCPGYSRTLRSKLPPSA
PATKKPRKPGILRYWEGNGAIHGLSLRIITPLASRSDHDDLAFASVPLSS
MSVGGYGTKTHKITAGPENGFFTRVKSIRLEALGKAADERHEPMTRASIS
IQGCSAGSIAVDALSSTLYETQPIGSDVENSETDERRVESVENIEKIVAA
RPEFLLWVEDVTTAIDINCSKRHGMRLDFAGHGGVVALEPVGLVQLVNDM
RDFGLKYIGRPLRRQSSLSSMSADESPSALPSRSSTSSLYGADGEPRSLR
MMSDMRHWTVTILGHEPIGDGDTLALVLSCETMLLPQIDLFGSSFMRFKG
STTKIRLMHWSQWDHTTNFSCEEAKFDISRGIQVGKKVSLKSASIDWDMD
AQAGLACLPGLFRELKKLKFSRHTYGLDESDYDENLTASGAAKKQPVVSE
EQLRESRSRRRVKLLEELHTWELSGSDIEMVAMFPDGPKMGMSIGKLPSC
TLDSEIFCGQERFGKAANRYRYQKVKPNSVP*

mRNA from alignment at NODE_163_length_42078_cov_4.640103:28522..30947+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8368.t1 ID=Gcaud8368.t1|Name=Gcaud8368.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2426bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:28522..30947+ (Gracilaria caudata M_176_S67 male)
ATGCTTTTTGCATTCGCGGCGACGTCCGCTGACCAACGAATTCATCGAAT
AGCACTTCGTCTTGCTCAGTGGCTTGGCGGCCTTTCTATATCCACCGTTA
TCTTTCTCTTTCTGTTGTTCATCATTACCATTGTCCTGCGTCGTAAGGGT
TATGGCGTTCTTCTCAGGTTTTTTACCATCATAGTTTATGCACGTCCAGG
TGCTCGTCGATTTCCACACGGATGCGAGGTGCGCATCACCACTCGCTTTA
TTGGATTCCTTATTAGCGGTTGCAGAGGACCATGGCTGGATATATCTGCA
GAGCGCTTTTACATGCGAATGCGCCCATCGCTCCGACCCACGCCTCGACT
CAATCGCCGATGGGTGTCCCTTGTCAGGTTTTTCTCTCTTGGCGTAGCCG
CAATGGATAGAGGGTATTGGTCCACGCTTCTTCGAAATGTTCTTACTCGC
GTTTTTGCGTTTGTTGTTCGTGGTTTGAGAATACGGGTCGACAAAGTTCG
TGTCTGGAAAGACGGGGGATCCTGGGAGTGCAAGGCAGAACAGTTCGTGT
TGGAAGGGGGAGCATTCGGAGTTTTCGGCAGCCAGTACACTCTCTCTGTC
AACGAATTATACGTTAACGTGTGCAAGCGTCCAATTGCCGACGCGTCCCC
ATATCCCGCAATATATGCTGCTCTTGTGCTTCGTAAGGGAACTGAGGTCA
ACGCATATCTGGATCCTCGGTTCTTCACTCTGCTGCGCCCGAGGCGGCTT
GCAATACTAGATGATTTACGACTGTCGATTAGGGCTCGGGATGTATCATG
GAACGCGCCTGGAATTTTCGAAACGAGCATTACCCATATTGACGGTGAGC
TATGTCCGGGTTATTCTCGAACCTTGCGCTCAAAGCTACCGCCATCAGCA
CCTGCAACAAAGAAACCACGGAAGCCTGGCATTCTACGATATTGGGAAGG
GAACGGCGCGATTCACGGGCTTTCGCTTCGCATAATCACTCCGCTTGCAA
GTCGAAGCGATCATGACGATCTAGCGTTTGCGTCAGTCCCTTTATCCTCT
ATGTCCGTAGGTGGATATGGAACAAAGACGCACAAGATAACAGCGGGACC
AGAGAACGGATTTTTCACGCGCGTCAAGAGTATTCGGCTAGAGGCGTTAG
GAAAGGCTGCTGATGAACGACATGAGCCTATGACCCGTGCATCGATCTCT
ATCCAGGGATGCAGTGCAGGTTCCATTGCTGTTGATGCACTATCAAGCAC
TCTGTACGAAACCCAACCTATTGGTTCTGATGTAGAGAACAGCGAAACCG
ATGAACGTCGTGTTGAATCCGTTGAAAACATCGAAAAGATCGTTGCCGCA
AGGCCTGAATTTCTGCTTTGGGTTGAAGATGTCACAACAGCCATTGATAT
CAACTGCTCAAAAAGACATGGTATGCGTCTCGACTTTGCTGGTCACGGGG
GAGTTGTGGCACTAGAGCCTGTTGGTCTTGTACAGCTTGTGAATGACATG
CGTGACTTCGGTCTAAAGTATATTGGGAGGCCCTTGCGAAGGCAGAGTTC
TTTATCAAGCATGAGTGCTGATGAATCACCATCAGCCCTTCCTAGCAGAT
CGAGCACTAGCAGTCTCTATGGAGCTGATGGAGAGCCACGATCATTGCGA
ATGATGTCAGACATGCGCCACTGGACTGTTACTATTCTCGGTCACGAGCC
CATAGGCGACGGAGACACTCTGGCTTTGGTTCTTTCATGTGAAACAATGC
TTCTGCCTCAGATCGACTTGTTTGGTTCTTCTTTTATGCGCTTTAAAGGC
TCTACAACCAAAATTCGCTTAATGCATTGGAGTCAATGGGATCACACTAC
AAATTTTTCTTGCGAAGAGGCAAAGTTTGATATTAGTCGTGGGATTCAGG
TAGGGAAGAAAGTAAGTCTGAAATCTGCCTCCATCGATTGGGACATGGAT
GCCCAGGCAGGCCTCGCGTGTTTGCCAGGGCTGTTTCGAGAATTAAAGAA
GCTTAAATTCAGTCGACACACGTATGGTTTGGACGAATCCGATTATGACG
AGAATCTTACTGCAAGTGGCGCCGCCAAAAAGCAACCTGTGGTATCTGAA
GAACAGCTCAGGGAAAGCAGATCTCGAAGGAGAGTGAAGCTCCTAGAAGA
ACTGCACACGTGGGAACTTTCAGGATCTGACATTGAAATGGTTGCGATGT
TTCCGGATGGGCCGAAAATGGGCATGAGTATAGGGAAATTACCGTCCTGT
ACTTTGGACTCAGAAATATTTTGCGGCCAGGAAGTCGTTGTGACGATGCA
GGATAAAAAGTTCGCACATGGTTCCGAATTGCGACTTTCTTCACCGCTTC
ACACCATGCATAGAGATTTGGAAAAGCGGCGAATCGATATAGATATCAAA
AGGTTAAGCCTAATTCTGTACCATGA

Coding sequence (CDS) from alignment at NODE_163_length_42078_cov_4.640103:28522..30947+

>Gcaud8368.t1 ID=Gcaud8368.t1|Name=Gcaud8368.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2346bp|location=Sequence derived from alignment at NODE_163_length_42078_cov_4.640103:28522..30947+ (Gracilaria caudata M_176_S67 male)
ATGCTTTTTGCATTCGCGGCGACGTCCGCTGACCAACGAATTCATCGAAT
AGCACTTCGTCTTGCTCAGTGGCTTGGCGGCCTTTCTATATCCACCGTTA
TCTTTCTCTTTCTGTTGTTCATCATTACCATTGTCCTGCGTCGTAAGGGT
TATGGCGTTCTTCTCAGGTTTTTTACCATCATAGTTTATGCACGTCCAGG
TGCTCGTCGATTTCCACACGGATGCGAGGTGCGCATCACCACTCGCTTTA
TTGGATTCCTTATTAGCGGTTGCAGAGGACCATGGCTGGATATATCTGCA
GAGCGCTTTTACATGCGAATGCGCCCATCGCTCCGACCCACGCCTCGACT
CAATCGCCGATGGGTGTCCCTTGTCAGGTTTTTCTCTCTTGGCGTAGCCG
CAATGGATAGAGGGTATTGGTCCACGCTTCTTCGAAATGTTCTTACTCGC
GTTTTTGCGTTTGTTGTTCGTGGTTTGAGAATACGGGTCGACAAAGTTCG
TGTCTGGAAAGACGGGGGATCCTGGGAGTGCAAGGCAGAACAGTTCGTGT
TGGAAGGGGGAGCATTCGGAGTTTTCGGCAGCCAGTACACTCTCTCTGTC
AACGAATTATACGTTAACGTGTGCAAGCGTCCAATTGCCGACGCGTCCCC
ATATCCCGCAATATATGCTGCTCTTGTGCTTCGTAAGGGAACTGAGGTCA
ACGCATATCTGGATCCTCGGTTCTTCACTCTGCTGCGCCCGAGGCGGCTT
GCAATACTAGATGATTTACGACTGTCGATTAGGGCTCGGGATGTATCATG
GAACGCGCCTGGAATTTTCGAAACGAGCATTACCCATATTGACGGTGAGC
TATGTCCGGGTTATTCTCGAACCTTGCGCTCAAAGCTACCGCCATCAGCA
CCTGCAACAAAGAAACCACGGAAGCCTGGCATTCTACGATATTGGGAAGG
GAACGGCGCGATTCACGGGCTTTCGCTTCGCATAATCACTCCGCTTGCAA
GTCGAAGCGATCATGACGATCTAGCGTTTGCGTCAGTCCCTTTATCCTCT
ATGTCCGTAGGTGGATATGGAACAAAGACGCACAAGATAACAGCGGGACC
AGAGAACGGATTTTTCACGCGCGTCAAGAGTATTCGGCTAGAGGCGTTAG
GAAAGGCTGCTGATGAACGACATGAGCCTATGACCCGTGCATCGATCTCT
ATCCAGGGATGCAGTGCAGGTTCCATTGCTGTTGATGCACTATCAAGCAC
TCTGTACGAAACCCAACCTATTGGTTCTGATGTAGAGAACAGCGAAACCG
ATGAACGTCGTGTTGAATCCGTTGAAAACATCGAAAAGATCGTTGCCGCA
AGGCCTGAATTTCTGCTTTGGGTTGAAGATGTCACAACAGCCATTGATAT
CAACTGCTCAAAAAGACATGGTATGCGTCTCGACTTTGCTGGTCACGGGG
GAGTTGTGGCACTAGAGCCTGTTGGTCTTGTACAGCTTGTGAATGACATG
CGTGACTTCGGTCTAAAGTATATTGGGAGGCCCTTGCGAAGGCAGAGTTC
TTTATCAAGCATGAGTGCTGATGAATCACCATCAGCCCTTCCTAGCAGAT
CGAGCACTAGCAGTCTCTATGGAGCTGATGGAGAGCCACGATCATTGCGA
ATGATGTCAGACATGCGCCACTGGACTGTTACTATTCTCGGTCACGAGCC
CATAGGCGACGGAGACACTCTGGCTTTGGTTCTTTCATGTGAAACAATGC
TTCTGCCTCAGATCGACTTGTTTGGTTCTTCTTTTATGCGCTTTAAAGGC
TCTACAACCAAAATTCGCTTAATGCATTGGAGTCAATGGGATCACACTAC
AAATTTTTCTTGCGAAGAGGCAAAGTTTGATATTAGTCGTGGGATTCAGG
TAGGGAAGAAAGTAAGTCTGAAATCTGCCTCCATCGATTGGGACATGGAT
GCCCAGGCAGGCCTCGCGTGTTTGCCAGGGCTGTTTCGAGAATTAAAGAA
GCTTAAATTCAGTCGACACACGTATGGTTTGGACGAATCCGATTATGACG
AGAATCTTACTGCAAGTGGCGCCGCCAAAAAGCAACCTGTGGTATCTGAA
GAACAGCTCAGGGAAAGCAGATCTCGAAGGAGAGTGAAGCTCCTAGAAGA
ACTGCACACGTGGGAACTTTCAGGATCTGACATTGAAATGGTTGCGATGT
TTCCGGATGGGCCGAAAATGGGCATGAGTATAGGGAAATTACCGTCCTGT
ACTTTGGACTCAGAAATATTTTGCGGCCAGGAAAGATTTGGAAAAGCGGC
GAATCGATATAGATATCAAAAGGTTAAGCCTAATTCTGTACCATGA