Gcaud207.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud207.t1
Unique NameGcaud207.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length98
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_16293_length_329_cov_6.096639contigNODE_16293_length_329_cov_6.096639:2..295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000019062
PFAMsHist_deacetyl
Max annot lvl121069|Pythiales
Evalue2.08e-16
EggNOG OGsCOG0123@1|root,KOG1342@2759|Eukaryota,1MAYU@121069|Pythiales
DescriptionHistone deacetylase. Source PGD
COG categoryB
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud207Gcaud207Gracilaria caudata M_176_S67 malegeneNODE_16293_length_329_cov_6.096639 2..295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud207.t1.CDS1Gcaud207.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_16293_length_329_cov_6.096639 2..295 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud207.t1.exon1Gcaud207.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_16293_length_329_cov_6.096639 2..295 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud207.t1.stop1Gcaud207.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_16293_length_329_cov_6.096639 293..295 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud207.t1Gcaud207.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_16293_length_329_cov_6.096639 2..295 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud207.t1 ID=Gcaud207.t1|Name=Gcaud207.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=98bp
NDYWEYFAPDHKLHFSADKTVKNLNTPNYIGKVTEKIMENLRCLDAAPSV
EMQEIPSILYCSDDEDELDSDQRNISDEKQVDGEFYDDESDHGMDWS*
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spliced messenger RNA

>Gcaud207.t1 ID=Gcaud207.t1|Name=Gcaud207.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=294bp|location=Sequence derived from alignment at NODE_16293_length_329_cov_6.096639:2..295+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
AACGACTATTGGGAGTATTTCGCCCCAGATCACAAACTCCACTTTTCGGC
TGATAAAACCGTCAAGAATCTCAACACACCAAACTATATTGGAAAAGTCA
CGGAGAAGATCATGGAGAACTTGAGATGTTTGGATGCAGCCCCTTCCGTT
GAAATGCAGGAAATTCCATCTATACTCTACTGTTCTGACGACGAGGATGA
GCTTGATTCCGATCAAAGGAACATTTCGGATGAGAAACAAGTAGACGGAG
AATTTTATGACGACGAGTCGGACCATGGAATGGATTGGAGCTGA
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protein sequence of Gcaud207.t1

>Gcaud207.t1 ID=Gcaud207.t1|Name=Gcaud207.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=98bp
NDYWEYFAPDHKLHFSADKTVKNLNTPNYIGKVTEKIMENLRCLDAAPSV
EMQEIPSILYCSDDEDELDSDQRNISDEKQVDGEFYDDESDHGMDWS*
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mRNA from alignment at NODE_16293_length_329_cov_6.096639:2..295+

Legend: CDSpolypeptideexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud207.t1 ID=Gcaud207.t1|Name=Gcaud207.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=294bp|location=Sequence derived from alignment at NODE_16293_length_329_cov_6.096639:2..295+ (Gracilaria caudata M_176_S67 male)
AACGACTATTGGGAGTATTTCGCCCCAGATCACAAACTCCACTTTTCGGC
TGATAAAACCGTCAAGAATCTCAACACACCAAACTATATTGGAAAAGTCA
CGGAGAAGATCATGGAGAACTTGAGATGTTTGGATGCAGCCCCTTCCGTT
GAAATGCAGGAAATTCCATCTATACTCTACTGTTCTGACGACGAGGATGA
GCTTGATTCCGATCAAAGGAACATTTCGGATGAGAAACAAGTAGACGGAG
AATTTTATGACGACGAGTCGGACCATGGAATGGATTGGAGCTGA
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Coding sequence (CDS) from alignment at NODE_16293_length_329_cov_6.096639:2..295+

>Gcaud207.t1 ID=Gcaud207.t1|Name=Gcaud207.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=294bp|location=Sequence derived from alignment at NODE_16293_length_329_cov_6.096639:2..295+ (Gracilaria caudata M_176_S67 male)
AACGACTATTGGGAGTATTTCGCCCCAGATCACAAACTCCACTTTTCGGC
TGATAAAACCGTCAAGAATCTCAACACACCAAACTATATTGGAAAAGTCA
CGGAGAAGATCATGGAGAACTTGAGATGTTTGGATGCAGCCCCTTCCGTT
GAAATGCAGGAAATTCCATCTATACTCTACTGTTCTGACGACGAGGATGA
GCTTGATTCCGATCAAAGGAACATTTCGGATGAGAAACAAGTAGACGGAG
AATTTTATGACGACGAGTCGGACCATGGAATGGATTGGAGCTGA
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