Gcaud7604.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7604.t1
Unique Name	Gcaud7604.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	415

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1007_length_15157_cov_3.910726	contig	NODE_1007_length_15157_cov_3.910726:3158..4402 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	6326.BUX.s01078.97
Preferred name	PPP1R8
PFAMs	FHA
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K13216
GOs	GO:0000902,GO:0000904,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0004518,GO:0004540,GO:0004857,GO:0004864,GO:0004865,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008150,GO:0008152,GO:0008157,GO:0008283,GO:0008995,GO:0009056,GO:0009057,GO:0009605,GO:0009653,GO:0009892,GO:0009987,GO:0010563,GO:0010605,GO:0010921,GO:0010923,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0019208,GO:0019212,GO:0019220,GO:0019222,GO:0019439,GO:0019888,GO:0019899,GO:0019902,GO:0019903,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0030234,GO:0031175,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032515,GO:0032989,GO:0032990,GO:0034641,GO:0034655,GO:0035303,GO:0035304,GO:0035305,GO:0035308,GO:0040011,GO:0042221,GO:0042330,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043666,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045936,GO:0046483,GO:0046700,GO:0048468,GO:0048519,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0060255,GO:0061564,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097485,GO:0098772,GO:0120036,GO:0120039,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575
Evalue	9.62e-08
EggNOG OGs	KOG1880@1\|root,KOG1880@2759\|Eukaryota,38DYB@33154\|Opisthokonta,3B9IK@33208\|Metazoa,3CSBM@33213\|Bilateria,40AWW@6231\|Nematoda,1KTP1@119089\|Chromadorea
Description	protein serine/threonine phosphatase inhibitor activity
COG category	S
BRITE	ko00000,ko01000,ko01009,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7604	Gcaud7604	Gracilaria caudata M_176_S67 male	gene	NODE_1007_length_15157_cov_3.910726 3158..4402 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7604.t1.start1	Gcaud7604.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1007_length_15157_cov_3.910726 3158..3160 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7604.t1.CDS1	Gcaud7604.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1007_length_15157_cov_3.910726 3158..4402 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7604.t1.exon1	Gcaud7604.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1007_length_15157_cov_3.910726 3158..4402 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7604.t1.stop1	Gcaud7604.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1007_length_15157_cov_3.910726 4400..4402 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7604.t1	Gcaud7604.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1007_length_15157_cov_3.910726 3158..4402 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1007_length_15157_cov_3.910726:3158..4402+
coding sequence from alignment at NODE_1007_length_15157_cov_3.910726:3158..4402+

mRNA sequence

>Gcaud7604.t1 ID=Gcaud7604.t1|Name=Gcaud7604.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=415bp
MSVLPTQMGLPVCLVPSKLKYKPNNDALAEPSKIHGFQEIRHRTKETVGW
IKFMHPIPFLLFGRDLGASHVFVGHPTVSPQHAVAFWDRVSGLCMIQDLE
SEHGTFLNDNTVSHLEPAFIKPKDVIRFGTSAHHFIFDYLPLEYRDEEPP
SAQPPSMDARTEASNLPPPPLPPPRRLSNDSPSQRASGAFSRSPPRSDAM
DRPSARAFRMMGPPRRSTPLGGPRVPASEPDFMRPDEPDYDRERAMDNRW
NDRPIAAGEPMDDGRRRMPPPNSGRYPSRRGRNSPPPRPRDDRFDDRMPP
PMRDPRDFDRRPPPPDEFMDGPPPPHMPRRFGPPDGHPDDFRPPHDGDYD
RHAPPPMREFDDRGPPPPPSYRGRGGRDYEYERHRDDYRPRGGGGRGGYD
GRGQRHRPRQDDGY*

spliced messenger RNA

>Gcaud7604.t1 ID=Gcaud7604.t1|Name=Gcaud7604.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at NODE_1007_length_15157_cov_3.910726:3158..4402+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGTGCTACCCACGCAGATGGGTCTACCCGTCTGCCTTGTGCCTTC
CAAGCTCAAATACAAGCCCAACAACGACGCCCTCGCGGAGCCTTCAAAGA
TCCACGGCTTTCAGGAAATACGCCACAGGACCAAGGAAACCGTCGGCTGG
ATCAAGTTCATGCACCCCATCCCGTTCCTGCTTTTCGGCCGCGACCTAGG
CGCCTCTCATGTCTTCGTGGGCCACCCCACAGTGTCGCCTCAGCACGCCG
TGGCCTTTTGGGACCGCGTTTCCGGCTTGTGCATGATTCAGGACCTGGAA
TCCGAGCACGGCACCTTTCTAAACGACAACACAGTGTCGCATCTGGAGCC
CGCTTTTATCAAACCCAAAGACGTCATTCGCTTCGGAACCTCCGCTCACC
ATTTCATCTTTGACTACCTTCCTTTAGAGTACCGTGACGAGGAGCCCCCG
AGTGCGCAGCCCCCTTCCATGGACGCACGCACAGAAGCGTCCAATCTTcc
gccgccgccgctgccgccgccgcGAAGATTGTCAAACGACTCACCATCGC
AAAGAGCCTCCGGCGCCTTTTCTCGCTCCCCGCCGCGCTCCGACGCCATG
GATCGGCCCAGCGCGCGCGCATTCAGGATGATGGGACCGCCGCGTAGAAG
CACCCCGCTGGGTGGACCACGCGTTCCTGCGTCAGAGCCTGACTTCATGA
GACCAGATGAGCCCGACTATGACCGCGAGCGTGCCATGGACAATCGTTGG
AATGACAGACCAATCGCAGCTGGCGAGCCAATGGATGATGGTCGTCGAAG
GATGCCGCCTCCAAATTCAGGTCGTTATCCTTCGCGACGCGGTCGTAATA
GTCCGCCGCCTAGGCCTAGAGATGATAGGTTCGACGATCGAATGCCACCG
CCCATGCGTGACCCGCGTGACTTTGACAGGCGACCTCCACCGCCTGATGA
GTTCATGGATGGTCCTCCGCCGCCGCATATGCCGCGCCGGTTCGGACCAC
CGGATGGTCACCCTGATGATTTCAGACCGCCGCACGATGGCGATTATGAC
AGGCATGCGCCGCCGCCAATGAGGGAGTTTGACGATAGGGGCCCTCCCCC
TCCCCCATCTTACCGTGGCAGAGGTGGTAGGGATTACGAGTATGAAAGAC
ATCGCGATGATTATCGTCCGAGGGGCGGTGGTGGACGAGGTGGGTACGAC
GGCAGAGGTCAAAGACATCGTCCCCGACAGGATGATGGCTACTGA

protein sequence of Gcaud7604.t1

>Gcaud7604.t1 ID=Gcaud7604.t1|Name=Gcaud7604.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=415bp
MSVLPTQMGLPVCLVPSKLKYKPNNDALAEPSKIHGFQEIRHRTKETVGW
IKFMHPIPFLLFGRDLGASHVFVGHPTVSPQHAVAFWDRVSGLCMIQDLE
SEHGTFLNDNTVSHLEPAFIKPKDVIRFGTSAHHFIFDYLPLEYRDEEPP
SAQPPSMDARTEASNLPPPPLPPPRRLSNDSPSQRASGAFSRSPPRSDAM
DRPSARAFRMMGPPRRSTPLGGPRVPASEPDFMRPDEPDYDRERAMDNRW
NDRPIAAGEPMDDGRRRMPPPNSGRYPSRRGRNSPPPRPRDDRFDDRMPP
PMRDPRDFDRRPPPPDEFMDGPPPPHMPRRFGPPDGHPDDFRPPHDGDYD
RHAPPPMREFDDRGPPPPPSYRGRGGRDYEYERHRDDYRPRGGGGRGGYD
GRGQRHRPRQDDGY*

mRNA from alignment at NODE_1007_length_15157_cov_3.910726:3158..4402+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7604.t1 ID=Gcaud7604.t1|Name=Gcaud7604.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1245bp|location=Sequence derived from alignment at NODE_1007_length_15157_cov_3.910726:3158..4402+ (Gracilaria caudata M_176_S67 male)
ATGTCCGTGCTACCCACGCAGATGGGTCTACCCGTCTGCCTTGTGCCTTC
CAAGCTCAAATACAAGCCCAACAACGACGCCCTCGCGGAGCCTTCAAAGA
TCCACGGCTTTCAGGAAATACGCCACAGGACCAAGGAAACCGTCGGCTGG
ATCAAGTTCATGCACCCCATCCCGTTCCTGCTTTTCGGCCGCGACCTAGG
CGCCTCTCATGTCTTCGTGGGCCACCCCACAGTGTCGCCTCAGCACGCCG
TGGCCTTTTGGGACCGCGTTTCCGGCTTGTGCATGATTCAGGACCTGGAA
TCCGAGCACGGCACCTTTCTAAACGACAACACAGTGTCGCATCTGGAGCC
CGCTTTTATCAAACCCAAAGACGTCATTCGCTTCGGAACCTCCGCTCACC
ATTTCATCTTTGACTACCTTCCTTTAGAGTACCGTGACGAGGAGCCCCCG
AGTGCGCAGCCCCCTTCCATGGACGCACGCACAGAAGCGTCCAATCTTcc
gccgccgccgctgccgccgccgcGAAGATTGTCAAACGACTCACCATCGC
AAAGAGCCTCCGGCGCCTTTTCTCGCTCCCCGCCGCGCTCCGACGCCATG
GATCGGCCCAGCGCGCGCGCATTCAGGATGATGGGACCGCCGCGTAGAAG
CACCCCGCTGGGTGGACCACGCGTTCCTGCGTCAGAGCCTGACTTCATGA
GACCAGATGAGCCCGACTATGACCGCGAGCGTGCCATGGACAATCGTTGG
AATGACAGACCAATCGCAGCTGGCGAGCCAATGGATGATGGTCGTCGAAG
GATGCCGCCTCCAAATTCAGGTCGTTATCCTTCGCGACGCGGTCGTAATA
GTCCGCCGCCTAGGCCTAGAGATGATAGGTTCGACGATCGAATGCCACCG
CCCATGCGTGACCCGCGTGACTTTGACAGGCGACCTCCACCGCCTGATGA
GTTCATGGATGGTCCTCCGCCGCCGCATATGCCGCGCCGGTTCGGACCAC
CGGATGGTCACCCTGATGATTTCAGACCGCCGCACGATGGCGATTATGAC
AGGCATGCGCCGCCGCCAATGAGGGAGTTTGACGATAGGGGCCCTCCCCC
TCCCCCATCTTACCGTGGCAGAGGTGGTAGGGATTACGAGTATGAAAGAC
ATCGCGATGATTATCGTCCGAGGGGCGGTGGTGGACGAGGTGGGTACGAC
GGCAGAGGTCAAAGACATCGTCCCCGACAGGATGATGGCTACTGA

Coding sequence (CDS) from alignment at NODE_1007_length_15157_cov_3.910726:3158..4402+

>Gcaud7604.t1 ID=Gcaud7604.t1|Name=Gcaud7604.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1245bp|location=Sequence derived from alignment at NODE_1007_length_15157_cov_3.910726:3158..4402+ (Gracilaria caudata M_176_S67 male)
ATGTCCGTGCTACCCACGCAGATGGGTCTACCCGTCTGCCTTGTGCCTTC
CAAGCTCAAATACAAGCCCAACAACGACGCCCTCGCGGAGCCTTCAAAGA
TCCACGGCTTTCAGGAAATACGCCACAGGACCAAGGAAACCGTCGGCTGG
ATCAAGTTCATGCACCCCATCCCGTTCCTGCTTTTCGGCCGCGACCTAGG
CGCCTCTCATGTCTTCGTGGGCCACCCCACAGTGTCGCCTCAGCACGCCG
TGGCCTTTTGGGACCGCGTTTCCGGCTTGTGCATGATTCAGGACCTGGAA
TCCGAGCACGGCACCTTTCTAAACGACAACACAGTGTCGCATCTGGAGCC
CGCTTTTATCAAACCCAAAGACGTCATTCGCTTCGGAACCTCCGCTCACC
ATTTCATCTTTGACTACCTTCCTTTAGAGTACCGTGACGAGGAGCCCCCG
AGTGCGCAGCCCCCTTCCATGGACGCACGCACAGAAGCGTCCAATCTTcc
gccgccgccgctgccgccgccgcGAAGATTGTCAAACGACTCACCATCGC
AAAGAGCCTCCGGCGCCTTTTCTCGCTCCCCGCCGCGCTCCGACGCCATG
GATCGGCCCAGCGCGCGCGCATTCAGGATGATGGGACCGCCGCGTAGAAG
CACCCCGCTGGGTGGACCACGCGTTCCTGCGTCAGAGCCTGACTTCATGA
GACCAGATGAGCCCGACTATGACCGCGAGCGTGCCATGGACAATCGTTGG
AATGACAGACCAATCGCAGCTGGCGAGCCAATGGATGATGGTCGTCGAAG
GATGCCGCCTCCAAATTCAGGTCGTTATCCTTCGCGACGCGGTCGTAATA
GTCCGCCGCCTAGGCCTAGAGATGATAGGTTCGACGATCGAATGCCACCG
CCCATGCGTGACCCGCGTGACTTTGACAGGCGACCTCCACCGCCTGATGA
GTTCATGGATGGTCCTCCGCCGCCGCATATGCCGCGCCGGTTCGGACCAC
CGGATGGTCACCCTGATGATTTCAGACCGCCGCACGATGGCGATTATGAC
AGGCATGCGCCGCCGCCAATGAGGGAGTTTGACGATAGGGGCCCTCCCCC
TCCCCCATCTTACCGTGGCAGAGGTGGTAGGGATTACGAGTATGAAAGAC
ATCGCGATGATTATCGTCCGAGGGGCGGTGGTGGACGAGGTGGGTACGAC
GGCAGAGGTCAAAGACATCGTCCCCGACAGGATGATGGCTACTGA