Gcaud2553.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2553.t1
Unique NameGcaud2553.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length762
Homology
BLAST of Gcaud2553.t1 vs. uniprot
Match: R7Q5A1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5A1_CHOCR)

HSP 1 Score: 214 bits (545), Expect = 3.580e-55
Identity = 175/639 (27.39%), Postives = 305/639 (47.73%), Query Frame = 0
Query:    1 MSVFTAGASTTNAKLVRSLAHSLKTSSANCK-----PLLDYCCSQNAFSAVSADDTEHFFNTAIAALTSGNEATAALSLQVLYHALTTIPPYLLRPHWLHITQKLTSLLKSSKS-SRSPRFEAKLLTVMASAVSSAAPFPVLQPEMKAVVSKVCQSALFHALRALEPTQITDYICKAALCLIFAVLNTAPREVRTILSQLETGIRERWLFHRSPSVRNTAVLLSAHLLVCHAETARTKQFEERLNGACKQLDDIMNMIDMFGPSDAEKRPQLFDQTLRQLSLCELQL-----RVNMVCSYIRHVVQ--LQQGMLMPM--PLATLYRVLLRGIEERSVDAYASGSGKHLLDTDSVFILINTVMVECAETLVSVSAASGKDAAVVFTHQIGRCLETKLSHVVLRSRTEAGVSSNLSERRLVYGLMAGMIETLGSGIIQYVSVMLMELFSVDVKLYIACSGRHALLVDDRCGSSEGSYRSRKRKRYQNEEGRQKGMGKGTSSTSKPTPLNLLDEHCARNAYAARKTLQEAL----RCVVNVLECRGFMCERVCEHVREIELAIGKLMKEGVLFDGVIHAASAAGLSGGGNRMFGEASELLIGGARMCASVLTGLDEAS---LQRETRRSRSGYESIIHARGP 617
            MS    G    NAK VR L+ +LK+ + + +      +L +  +  A + +S++D +  F+   A L + N  +   SL+V        PP L+  HW  +T ++ S+LKS++  +RS    A+ L  +AS +++ AP  +     K  ++  C SA+ H  R LE    +  +  A++ L+FA+LNTAPRE+R +L +LE  +  +W+ H   SVR  +  L AHLL+C  E  + K F+ER+   C +LD+I++++D F  +   +R       L    L E        R++ + S    ++Q  L  G L P+   +  L   L RG   R +D Y        L+ D V  LI     E   TLV+++ +  + A + + H + +    +LS+++L+ +T  G  + + +R L++  MA ++  LG G I+ +    ++LF  D+ +Y   +   + L+     +   S R RKR++  N   R+       +   + + ++   +     A A  + LQ  L    R +  ++E RG +  R  + +R IE+ + ++ +        +    A  L GG +R+  EAS  L+    +  S  T L  AS   L+    R RS  E ++H RGP
Sbjct:    1 MSALDLGTPAANAKQVRELSQALKSLNDSSRLYCFNAVLAHTGASRALATLSSEDADQLFSAVQAGLVNPNPYSRNASLRVAVLLSKHAPPSLVADHWASLTSRVISILKSARGVNRS--LTAQALAAVASLITAGAPLTLEGGNQKVSITTACHSAVVHVTRFLEGDPPSGDVALASIALLFAILNTAPRELRQVLPRLELALWGKWVGHPLESVRQASAKLLAHLLICCPEKVKQKVFDERIESGCTKLDEILSIVDHFTSARQSRRAVTPSMLLAVADLKEQAASGFADRLSHLYSAASFMLQEVLNHGSLTPLFISIPKLLHTLCRGFSHRQIDLYTPDLEGVALNADDVLRLIAITERESLRTLVTLTESVDRSAMLPYVHVLAQAFHRQLSYMILKVQTAPGAVAAIVQRSLLFDAMARIVMVLGCGFIEQILEPFVKLFECDIAIYSKAAHAQSYLLSKSSSAISESARFRKRRKVANSRNRE-------AHAKEMSAVDSTSDKSVTWASATIRDLQTVLISGTRLLTAIVENRGLLESRAVDALRRIEILMERIERFSTSSTEFLELIRAMALGGGPSRLSAEASPFLL--RCLSLSKQTTLSMASSPQLRSSGLRMRSTAELLLHPRGP 628          
The following BLAST results are available for this feature:
BLAST of Gcaud2553.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7Q5A1_CHOCR3.580e-5527.39Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 460..486
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 712..761
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 666..761
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 460..474
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 48..424

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1552_length_9789_cov_4.214168contigNODE_1552_length_9789_cov_4.214168:3625..5987 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2553.t1Gcaud2553.t1Gracilaria caudata M_176_S67 malemRNANODE_1552_length_9789_cov_4.214168 3625..5987 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2553.t1 ID=Gcaud2553.t1|Name=Gcaud2553.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=762bp
MSVFTAGASTTNAKLVRSLAHSLKTSSANCKPLLDYCCSQNAFSAVSADD
TEHFFNTAIAALTSGNEATAALSLQVLYHALTTIPPYLLRPHWLHITQKL
TSLLKSSKSSRSPRFEAKLLTVMASAVSSAAPFPVLQPEMKAVVSKVCQS
ALFHALRALEPTQITDYICKAALCLIFAVLNTAPREVRTILSQLETGIRE
RWLFHRSPSVRNTAVLLSAHLLVCHAETARTKQFEERLNGACKQLDDIMN
MIDMFGPSDAEKRPQLFDQTLRQLSLCELQLRVNMVCSYIRHVVQLQQGM
LMPMPLATLYRVLLRGIEERSVDAYASGSGKHLLDTDSVFILINTVMVEC
AETLVSVSAASGKDAAVVFTHQIGRCLETKLSHVVLRSRTEAGVSSNLSE
RRLVYGLMAGMIETLGSGIIQYVSVMLMELFSVDVKLYIACSGRHALLVD
DRCGSSEGSYRSRKRKRYQNEEGRQKGMGKGTSSTSKPTPLNLLDEHCAR
NAYAARKTLQEALRCVVNVLECRGFMCERVCEHVREIELAIGKLMKEGVL
FDGVIHAASAAGLSGGGNRMFGEASELLIGGARMCASVLTGLDEASLQRE
TRRSRSGYESIIHARGPAFCVKKRLCEQPIEEKMVGKWTGDKVAEERDDV
HGGEIEAEIAKALHDKEAAINTNGESKEAGVAQKGDGTSADGNDKQVDRD
VDMAGGADGCQNGDDDMDRADVDTMGKRQGGIPDKEGDTRENDSVGGARD
TPEGEHARDDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold