Gcaud2553.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2553.t1
Unique Name	Gcaud2553.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	762

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1552_length_9789_cov_4.214168	contig	NODE_1552_length_9789_cov_4.214168:3625..5987 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2553	Gcaud2553	Gracilaria caudata M_176_S67 male	gene	NODE_1552_length_9789_cov_4.214168 3625..5987 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t1	Gcaud2553.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1552_length_9789_cov_4.214168 3625..5987 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t1.stop1	Gcaud2553.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1552_length_9789_cov_4.214168 3625..3627 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t1.CDS1	Gcaud2553.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1552_length_9789_cov_4.214168 3625..3632 -
Gcaud2553.t1.CDS2	Gcaud2553.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1552_length_9789_cov_4.214168 3710..5987 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t1.exon1	Gcaud2553.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1552_length_9789_cov_4.214168 3625..3632 -
Gcaud2553.t1.exon2	Gcaud2553.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1552_length_9789_cov_4.214168 3710..5987 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t1.intron1	Gcaud2553.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1552_length_9789_cov_4.214168 3633..3709 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2553.t1.start1	Gcaud2553.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1552_length_9789_cov_4.214168 5985..5987 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1552_length_9789_cov_4.214168:3625..5987-
coding sequence from alignment at NODE_1552_length_9789_cov_4.214168:3625..5987-

mRNA sequence

>Gcaud2553.t1 ID=Gcaud2553.t1|Name=Gcaud2553.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=762bp
MSVFTAGASTTNAKLVRSLAHSLKTSSANCKPLLDYCCSQNAFSAVSADD
TEHFFNTAIAALTSGNEATAALSLQVLYHALTTIPPYLLRPHWLHITQKL
TSLLKSSKSSRSPRFEAKLLTVMASAVSSAAPFPVLQPEMKAVVSKVCQS
ALFHALRALEPTQITDYICKAALCLIFAVLNTAPREVRTILSQLETGIRE
RWLFHRSPSVRNTAVLLSAHLLVCHAETARTKQFEERLNGACKQLDDIMN
MIDMFGPSDAEKRPQLFDQTLRQLSLCELQLRVNMVCSYIRHVVQLQQGM
LMPMPLATLYRVLLRGIEERSVDAYASGSGKHLLDTDSVFILINTVMVEC
AETLVSVSAASGKDAAVVFTHQIGRCLETKLSHVVLRSRTEAGVSSNLSE
RRLVYGLMAGMIETLGSGIIQYVSVMLMELFSVDVKLYIACSGRHALLVD
DRCGSSEGSYRSRKRKRYQNEEGRQKGMGKGTSSTSKPTPLNLLDEHCAR
NAYAARKTLQEALRCVVNVLECRGFMCERVCEHVREIELAIGKLMKEGVL
FDGVIHAASAAGLSGGGNRMFGEASELLIGGARMCASVLTGLDEASLQRE
TRRSRSGYESIIHARGPAFCVKKRLCEQPIEEKMVGKWTGDKVAEERDDV
HGGEIEAEIAKALHDKEAAINTNGESKEAGVAQKGDGTSADGNDKQVDRD
VDMAGGADGCQNGDDDMDRADVDTMGKRQGGIPDKEGDTRENDSVGGARD
TPEGEHARDDS*

spliced messenger RNA

>Gcaud2553.t1 ID=Gcaud2553.t1|Name=Gcaud2553.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2286bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:3625..5987- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGTCTTCACAGCCGGAGCGTCAACGACGAACGCGAAGCTCGTTCG
TTCTCTGGCACATTCACTGAAGACGAGCTCTGCCAACTGCAAACCGCTTC
TGGATTATTGCTGCTCCCAAAACGCCTTCTCAGCCGTTTCGGCCGATGAC
ACCGAGCATTTCTTCAACACAGCAATAGCTGCCCTAACCTCTGGAAATGA
AGCGACCGCAGCATTATCGCTACAAGTTTTGTATCATGCGCTTACTACAA
TTCCGCCTTACCTGCTTCGTCCGCATTGGTTGCACATAACACAAAAGCTA
ACTTCACTTCTCAAGTCGTCCAAATCTTCGCGAAGCCCACGCTTCGAAGC
CAAGCTGCTGACGGTTATGGCTTCCGCAGTGTCCTCGGCTGCACCTTTTC
CTGTGCTACAACCAGAGATGAAGGCAGTTGTGTCAAAAGTATGTCAGTCG
GCACTATTCCACGCACTTCGTGCGTTGGAGCCTACTCAGATTACGGACTA
CATTTGCAAAGCTGCTCTTTGCTTGATATTTGCTGTGTTGAACACAGCTC
CTCGTGAAGTACGGACCATTCTGTCTCAACTGGAAACTGGCATACGAGAA
CGTTGGCTCTTTCATCGCAGCCCTAGTGTGCGAAACACAGCCGTGTTGCT
CTCTGCTCACTTGCTTGTGTGTCACGCAGAGACAGCAAGGACAAAGCAAT
TCGAAGAACGACTCAATGGGGCTTGCAAACAACTGGACGATATCATGAAC
ATGATTGACATGTTTGGTCCGTCAGATGCAGAAAAACGACCACAGTTGTT
TGATCAAACACTTCGGCAGTTATCTCTGTGTGAGTTGCAGTTGCGTGTCA
ATATGGTATGTTCCTACATTCGACATGTGGTCCAGCTACAACAGGGTATG
CTGATGCCGATGCCACTAGCCACCTTGTACCGTGTATTGCTGCGTGGCAT
CGAGGAGCGTTCTGTAGACGCTTATGCTTCAGGAAGCGGAAAACATTTGT
TAGACACGGATAGTGTGTTCATCTTGATCAACACTGTGATGGTTGAATGT
GCTGAGACTCTTGTGTCCGTTAGCGCAGCCAGTGGCAAGGATGCGGCTGT
CGTGTTCACACATCAAATCGGACGGTGTCTTGAAACAAAGCTTTCCCATG
TAGTCCTTCGAAGTCGAACAGAAGCAGGAGTGAGCTCGAATCTCTCTGAA
AGAAGGTTAGTGTACGGACTGATGGCAGGTATGATTGAGACCTTGGGCAG
TGGAATCATTCAGTATGTCAGTGTGATGCTGATGGAGTTGTTCTCCGTGG
ACGTGAAATTGTACATTGCATGTAGTGGACGACATGCATTGTTGGTTGAT
GACCGATGTGGCAGCAGTGAAGGGAGCTATCGCTCCAGAAAGCGGAAACG
CTATCAGAATGAGGAAGGTAGGCAGAAGGGCATGGGAAAAGGTACGAGTT
CGACGTCAAAGCCTACGCCGCTGAACTTGTTGGACGAACACTGTGCTCGA
AACGCTTATGCAGCAAGAAAGACGTTGCAAGAAGCTCTAAGGTGTGTGGT
GAACGTTCTCGAGTGTCGAGGCTTTATGTGTGAGCGAGTGTGTGAGCACG
TACGGGAGATTGAACTCGCGATCGGGAAGTTGATGAAGGAGGGAGTGCTG
TTTGACGGTGTGATACATGCAGCAAGTGCGGCTGGGTTGAGTGGCGGTGG
TAATCGAATGTTTGGGGAAGCTAGCGAGCTGTTGATTGGTGGGGCGAGAA
TGTGTGCTAGTGTTCTGACTGGACTTGACGAAGCAAGCTTACAACGAGAG
ACTAGGAGAAGTCGGAGCGGCTACGAGAGCATTATTCACGCTCGAGGACC
AGCGTTCTGCGTGAAAAAAAGGTTATGTGAGCAACCTATTGAAGAGAAGA
TGGTGGGGAAATGGACGGGAGACAAGGTGGCAGAGGAGAGGGACGACGTG
CACGGAGGGGAGATCGAAGCGGAGATTGCGAAAGCTTTGCACGACAAGGA
AGCTGCGATTAATACAAATGGCGAGAGTAAGGAGGCGGGTGTGGCGCAGA
AAGGGGACGGAACAAGTGCGGATGGAAATGACAAACAGGTGGACAGAGAT
GTGGACATGGCAGGCGGCGCAGACGGCTGCCAAAACGGTGATGATGACAT
GGACAGAGCGGATGTCGATACGATGGGCAAGCGCCAAGGCGGTATTCCTG
ACAAAGAAGGTGACACGCGCGAAAATGATTCGGTTGGAGGTGCTCGAGAC
ACGCCCGAGGGGGAGCACGCGCGAGACGACTCATGA

protein sequence of Gcaud2553.t1

>Gcaud2553.t1 ID=Gcaud2553.t1|Name=Gcaud2553.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=762bp
MSVFTAGASTTNAKLVRSLAHSLKTSSANCKPLLDYCCSQNAFSAVSADD
TEHFFNTAIAALTSGNEATAALSLQVLYHALTTIPPYLLRPHWLHITQKL
TSLLKSSKSSRSPRFEAKLLTVMASAVSSAAPFPVLQPEMKAVVSKVCQS
ALFHALRALEPTQITDYICKAALCLIFAVLNTAPREVRTILSQLETGIRE
RWLFHRSPSVRNTAVLLSAHLLVCHAETARTKQFEERLNGACKQLDDIMN
MIDMFGPSDAEKRPQLFDQTLRQLSLCELQLRVNMVCSYIRHVVQLQQGM
LMPMPLATLYRVLLRGIEERSVDAYASGSGKHLLDTDSVFILINTVMVEC
AETLVSVSAASGKDAAVVFTHQIGRCLETKLSHVVLRSRTEAGVSSNLSE
RRLVYGLMAGMIETLGSGIIQYVSVMLMELFSVDVKLYIACSGRHALLVD
DRCGSSEGSYRSRKRKRYQNEEGRQKGMGKGTSSTSKPTPLNLLDEHCAR
NAYAARKTLQEALRCVVNVLECRGFMCERVCEHVREIELAIGKLMKEGVL
FDGVIHAASAAGLSGGGNRMFGEASELLIGGARMCASVLTGLDEASLQRE
TRRSRSGYESIIHARGPAFCVKKRLCEQPIEEKMVGKWTGDKVAEERDDV
HGGEIEAEIAKALHDKEAAINTNGESKEAGVAQKGDGTSADGNDKQVDRD
VDMAGGADGCQNGDDDMDRADVDTMGKRQGGIPDKEGDTRENDSVGGARD
TPEGEHARDDS*

mRNA from alignment at NODE_1552_length_9789_cov_4.214168:3625..5987-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2553.t1 ID=Gcaud2553.t1|Name=Gcaud2553.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2363bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:3625..5987- (Gracilaria caudata M_176_S67 male)
ATGTCTGTCTTCACAGCCGGAGCGTCAACGACGAACGCGAAGCTCGTTCG
TTCTCTGGCACATTCACTGAAGACGAGCTCTGCCAACTGCAAACCGCTTC
TGGATTATTGCTGCTCCCAAAACGCCTTCTCAGCCGTTTCGGCCGATGAC
ACCGAGCATTTCTTCAACACAGCAATAGCTGCCCTAACCTCTGGAAATGA
AGCGACCGCAGCATTATCGCTACAAGTTTTGTATCATGCGCTTACTACAA
TTCCGCCTTACCTGCTTCGTCCGCATTGGTTGCACATAACACAAAAGCTA
ACTTCACTTCTCAAGTCGTCCAAATCTTCGCGAAGCCCACGCTTCGAAGC
CAAGCTGCTGACGGTTATGGCTTCCGCAGTGTCCTCGGCTGCACCTTTTC
CTGTGCTACAACCAGAGATGAAGGCAGTTGTGTCAAAAGTATGTCAGTCG
GCACTATTCCACGCACTTCGTGCGTTGGAGCCTACTCAGATTACGGACTA
CATTTGCAAAGCTGCTCTTTGCTTGATATTTGCTGTGTTGAACACAGCTC
CTCGTGAAGTACGGACCATTCTGTCTCAACTGGAAACTGGCATACGAGAA
CGTTGGCTCTTTCATCGCAGCCCTAGTGTGCGAAACACAGCCGTGTTGCT
CTCTGCTCACTTGCTTGTGTGTCACGCAGAGACAGCAAGGACAAAGCAAT
TCGAAGAACGACTCAATGGGGCTTGCAAACAACTGGACGATATCATGAAC
ATGATTGACATGTTTGGTCCGTCAGATGCAGAAAAACGACCACAGTTGTT
TGATCAAACACTTCGGCAGTTATCTCTGTGTGAGTTGCAGTTGCGTGTCA
ATATGGTATGTTCCTACATTCGACATGTGGTCCAGCTACAACAGGGTATG
CTGATGCCGATGCCACTAGCCACCTTGTACCGTGTATTGCTGCGTGGCAT
CGAGGAGCGTTCTGTAGACGCTTATGCTTCAGGAAGCGGAAAACATTTGT
TAGACACGGATAGTGTGTTCATCTTGATCAACACTGTGATGGTTGAATGT
GCTGAGACTCTTGTGTCCGTTAGCGCAGCCAGTGGCAAGGATGCGGCTGT
CGTGTTCACACATCAAATCGGACGGTGTCTTGAAACAAAGCTTTCCCATG
TAGTCCTTCGAAGTCGAACAGAAGCAGGAGTGAGCTCGAATCTCTCTGAA
AGAAGGTTAGTGTACGGACTGATGGCAGGTATGATTGAGACCTTGGGCAG
TGGAATCATTCAGTATGTCAGTGTGATGCTGATGGAGTTGTTCTCCGTGG
ACGTGAAATTGTACATTGCATGTAGTGGACGACATGCATTGTTGGTTGAT
GACCGATGTGGCAGCAGTGAAGGGAGCTATCGCTCCAGAAAGCGGAAACG
CTATCAGAATGAGGAAGGTAGGCAGAAGGGCATGGGAAAAGGTACGAGTT
CGACGTCAAAGCCTACGCCGCTGAACTTGTTGGACGAACACTGTGCTCGA
AACGCTTATGCAGCAAGAAAGACGTTGCAAGAAGCTCTAAGGTGTGTGGT
GAACGTTCTCGAGTGTCGAGGCTTTATGTGTGAGCGAGTGTGTGAGCACG
TACGGGAGATTGAACTCGCGATCGGGAAGTTGATGAAGGAGGGAGTGCTG
TTTGACGGTGTGATACATGCAGCAAGTGCGGCTGGGTTGAGTGGCGGTGG
TAATCGAATGTTTGGGGAAGCTAGCGAGCTGTTGATTGGTGGGGCGAGAA
TGTGTGCTAGTGTTCTGACTGGACTTGACGAAGCAAGCTTACAACGAGAG
ACTAGGAGAAGTCGGAGCGGCTACGAGAGCATTATTCACGCTCGAGGACC
AGCGTTCTGCGTGAAAAAAAGGTTATGTGAGCAACCTATTGAAGAGAAGA
TGGTGGGGAAATGGACGGGAGACAAGGTGGCAGAGGAGAGGGACGACGTG
CACGGAGGGGAGATCGAAGCGGAGATTGCGAAAGCTTTGCACGACAAGGA
AGCTGCGATTAATACAAATGGCGAGAGTAAGGAGGCGGGTGTGGCGCAGA
AAGGGGACGGAACAAGTGCGGATGGAAATGACAAACAGGTGGACAGAGAT
GTGGACATGGCAGGCGGCGCAGACGGCTGCCAAAACGGTGATGATGACAT
GGACAGAGCGGATGTCGATACGATGGGCAAGCGCCAAGGCGGTATTCCTG
ACAAAGAAGGTGACACGCGCGAAAATGATTCGGTTGGAGGTGCTCGAGAC
ACGCCCGAGGGGGAGCACGCGCGAGACGGTGCGAGCGCGGCAGTTGGTTG
CGCCACCGCGGATGGGAAGCGTGTGGAGAATAACGCGATAGATTTACACG
AAGAGACTCATGA

Coding sequence (CDS) from alignment at NODE_1552_length_9789_cov_4.214168:3625..5987-

>Gcaud2553.t1 ID=Gcaud2553.t1|Name=Gcaud2553.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2286bp|location=Sequence derived from alignment at NODE_1552_length_9789_cov_4.214168:3625..5987- (Gracilaria caudata M_176_S67 male)
ATGTCTGTCTTCACAGCCGGAGCGTCAACGACGAACGCGAAGCTCGTTCG
TTCTCTGGCACATTCACTGAAGACGAGCTCTGCCAACTGCAAACCGCTTC
TGGATTATTGCTGCTCCCAAAACGCCTTCTCAGCCGTTTCGGCCGATGAC
ACCGAGCATTTCTTCAACACAGCAATAGCTGCCCTAACCTCTGGAAATGA
AGCGACCGCAGCATTATCGCTACAAGTTTTGTATCATGCGCTTACTACAA
TTCCGCCTTACCTGCTTCGTCCGCATTGGTTGCACATAACACAAAAGCTA
ACTTCACTTCTCAAGTCGTCCAAATCTTCGCGAAGCCCACGCTTCGAAGC
CAAGCTGCTGACGGTTATGGCTTCCGCAGTGTCCTCGGCTGCACCTTTTC
CTGTGCTACAACCAGAGATGAAGGCAGTTGTGTCAAAAGTATGTCAGTCG
GCACTATTCCACGCACTTCGTGCGTTGGAGCCTACTCAGATTACGGACTA
CATTTGCAAAGCTGCTCTTTGCTTGATATTTGCTGTGTTGAACACAGCTC
CTCGTGAAGTACGGACCATTCTGTCTCAACTGGAAACTGGCATACGAGAA
CGTTGGCTCTTTCATCGCAGCCCTAGTGTGCGAAACACAGCCGTGTTGCT
CTCTGCTCACTTGCTTGTGTGTCACGCAGAGACAGCAAGGACAAAGCAAT
TCGAAGAACGACTCAATGGGGCTTGCAAACAACTGGACGATATCATGAAC
ATGATTGACATGTTTGGTCCGTCAGATGCAGAAAAACGACCACAGTTGTT
TGATCAAACACTTCGGCAGTTATCTCTGTGTGAGTTGCAGTTGCGTGTCA
ATATGGTATGTTCCTACATTCGACATGTGGTCCAGCTACAACAGGGTATG
CTGATGCCGATGCCACTAGCCACCTTGTACCGTGTATTGCTGCGTGGCAT
CGAGGAGCGTTCTGTAGACGCTTATGCTTCAGGAAGCGGAAAACATTTGT
TAGACACGGATAGTGTGTTCATCTTGATCAACACTGTGATGGTTGAATGT
GCTGAGACTCTTGTGTCCGTTAGCGCAGCCAGTGGCAAGGATGCGGCTGT
CGTGTTCACACATCAAATCGGACGGTGTCTTGAAACAAAGCTTTCCCATG
TAGTCCTTCGAAGTCGAACAGAAGCAGGAGTGAGCTCGAATCTCTCTGAA
AGAAGGTTAGTGTACGGACTGATGGCAGGTATGATTGAGACCTTGGGCAG
TGGAATCATTCAGTATGTCAGTGTGATGCTGATGGAGTTGTTCTCCGTGG
ACGTGAAATTGTACATTGCATGTAGTGGACGACATGCATTGTTGGTTGAT
GACCGATGTGGCAGCAGTGAAGGGAGCTATCGCTCCAGAAAGCGGAAACG
CTATCAGAATGAGGAAGGTAGGCAGAAGGGCATGGGAAAAGGTACGAGTT
CGACGTCAAAGCCTACGCCGCTGAACTTGTTGGACGAACACTGTGCTCGA
AACGCTTATGCAGCAAGAAAGACGTTGCAAGAAGCTCTAAGGTGTGTGGT
GAACGTTCTCGAGTGTCGAGGCTTTATGTGTGAGCGAGTGTGTGAGCACG
TACGGGAGATTGAACTCGCGATCGGGAAGTTGATGAAGGAGGGAGTGCTG
TTTGACGGTGTGATACATGCAGCAAGTGCGGCTGGGTTGAGTGGCGGTGG
TAATCGAATGTTTGGGGAAGCTAGCGAGCTGTTGATTGGTGGGGCGAGAA
TGTGTGCTAGTGTTCTGACTGGACTTGACGAAGCAAGCTTACAACGAGAG
ACTAGGAGAAGTCGGAGCGGCTACGAGAGCATTATTCACGCTCGAGGACC
AGCGTTCTGCGTGAAAAAAAGGTTATGTGAGCAACCTATTGAAGAGAAGA
TGGTGGGGAAATGGACGGGAGACAAGGTGGCAGAGGAGAGGGACGACGTG
CACGGAGGGGAGATCGAAGCGGAGATTGCGAAAGCTTTGCACGACAAGGA
AGCTGCGATTAATACAAATGGCGAGAGTAAGGAGGCGGGTGTGGCGCAGA
AAGGGGACGGAACAAGTGCGGATGGAAATGACAAACAGGTGGACAGAGAT
GTGGACATGGCAGGCGGCGCAGACGGCTGCCAAAACGGTGATGATGACAT
GGACAGAGCGGATGTCGATACGATGGGCAAGCGCCAAGGCGGTATTCCTG
ACAAAGAAGGTGACACGCGCGAAAATGATTCGGTTGGAGGTGCTCGAGAC
ACGCCCGAGGGGGAGCACGCGCGAGACGACTCATGA