Gcaud9343.t2 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9343.t2
Unique NameGcaud9343.t2
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1524_length_9953_cov_3.701683contigNODE_1524_length_9953_cov_3.701683:1770..2465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703424.1
PFAMsPRA1
Max annot lvl2759|Eukaryota
KEGG rclassRC02078
KEGG koko:K12638,ko:K19496,ko:K20359
KEGG TC1.A.17.1.1,1.A.17.1.22,9.A.49.1
KEGG ReactionR07431,R07448,R07786,R07787,R07791,R07792
KEGG Pathwayko00905,ko01100,ko01110,map00905,map01100,map01110
KEGG ModuleM00371
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0008150,GO:0012505,GO:0016020,GO:0016032,GO:0016192,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0040011,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044000,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044431,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044766,GO:0046739,GO:0046794,GO:0051179,GO:0051234,GO:0051701,GO:0051704,GO:0051814,GO:0052126,GO:0052192,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:1902579
Evalue3e-12
EggNOG OGsKOG3142@1|root,KOG3142@2759|Eukaryota
EC1.14.13.112
Descriptionvesicle-mediated transport
COG categoryU
BRITEko00000,ko00001,ko00002,ko00199,ko01000,ko02000,ko04040,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9343Gcaud9343Gracilaria caudata M_176_S67 malegeneNODE_1524_length_9953_cov_3.701683 1770..8134 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9343.t2.stop1Gcaud9343.t2.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1524_length_9953_cov_3.701683 1770..1772 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9343.t2.CDS1Gcaud9343.t2.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1524_length_9953_cov_3.701683 1770..2465 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9343.t2.exon1Gcaud9343.t2.exon1Gracilaria caudata M_176_S67 maleexonNODE_1524_length_9953_cov_3.701683 1770..2465 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9343.t2.start1Gcaud9343.t2.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1524_length_9953_cov_3.701683 2463..2465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9343.t2Gcaud9343.t2Gracilaria caudata M_176_S67 malepolypeptideNODE_1524_length_9953_cov_3.701683 1770..2465 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9343.t2 ID=Gcaud9343.t2|Name=Gcaud9343.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=232bp
MAASMPAAYSNIDDASRPADPPAAEPPLKPSAVDRVHAVARGAQTVATDA
TQSVKEFLQAPMPQMSIYTEPFNPSETHSMRDRFQMVCDNCRRWSEFADV
STMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLLCGLFHPMRALALAA
MVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVFALLVLTVGHVFNFL
FLVVCITVPIVLLHAFFREHDASTALDNAHI*
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spliced messenger RNA

>Gcaud9343.t2 ID=Gcaud9343.t2|Name=Gcaud9343.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=696bp|location=Sequence derived from alignment at NODE_1524_length_9953_cov_3.701683:1770..2465- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGCTAGCATGCCGGCTGCTTATTCGAATATCGATGATGCGTCGCG
TCCGGCAGACCCGCCGGCCGCAGAGCCGCCGCTCAAGCCGTCCGCGGTGG
ACCGAGTGCATGCGGTTGCGCGCGGCGCCCAGACCGTGGCTACCGACGCT
ACGCAGTCGGTGAAGGAATTCTTGCAGGCTCCCATGCCGCAGATGAGCAT
ATACACGGAGCCTTTCAACCCGTCGGAGACGCACTCCATGCGCGATCGCT
TCCAAATGGTGTGCGATAACTGTCGCAGATGGTCGGAGTTTGCGGACGTG
AGCACCATGAACGCGCCGGCGGCGTCGGAGGTGAAGCGGAGGATTGCGCA
CAATTTGGAGACGTTCTTTTATAATTATGTGTTGATTTCGTTTGTTGTAC
TGCTGTTGTGCGGCTTGTTTCACCCCATGAGGGCGTTGGCGCTGGCCGCC
ATGGTGTTGGGCGCCGTGCTGCTGTACATCATCTTCCCGGAGGACTACCG
CGTGTCGGATAGCTTCTCCATCACCAAGCCCATCAAGCATGTGTTCATGA
CCGTGTTCGCTCTGCTCGTGCTTACCGTTGGCCATGTGTTCAACTTCCTG
TTCCTGGTGGTGTGTATCACCGTTCCCATCGTGTTGCTGCACGCCTTCTT
CCGTGAACATGATGCGTCCACAGCTCTGGACAATGCGCATATCTGA
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protein sequence of Gcaud9343.t2

>Gcaud9343.t2 ID=Gcaud9343.t2|Name=Gcaud9343.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=232bp
MAASMPAAYSNIDDASRPADPPAAEPPLKPSAVDRVHAVARGAQTVATDA
TQSVKEFLQAPMPQMSIYTEPFNPSETHSMRDRFQMVCDNCRRWSEFADV
STMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLLCGLFHPMRALALAA
MVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVFALLVLTVGHVFNFL
FLVVCITVPIVLLHAFFREHDASTALDNAHI*
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mRNA from alignment at NODE_1524_length_9953_cov_3.701683:1770..2465-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9343.t2 ID=Gcaud9343.t2|Name=Gcaud9343.t2|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=696bp|location=Sequence derived from alignment at NODE_1524_length_9953_cov_3.701683:1770..2465- (Gracilaria caudata M_176_S67 male)
ATGGCTGCTAGCATGCCGGCTGCTTATTCGAATATCGATGATGCGTCGCG
TCCGGCAGACCCGCCGGCCGCAGAGCCGCCGCTCAAGCCGTCCGCGGTGG
ACCGAGTGCATGCGGTTGCGCGCGGCGCCCAGACCGTGGCTACCGACGCT
ACGCAGTCGGTGAAGGAATTCTTGCAGGCTCCCATGCCGCAGATGAGCAT
ATACACGGAGCCTTTCAACCCGTCGGAGACGCACTCCATGCGCGATCGCT
TCCAAATGGTGTGCGATAACTGTCGCAGATGGTCGGAGTTTGCGGACGTG
AGCACCATGAACGCGCCGGCGGCGTCGGAGGTGAAGCGGAGGATTGCGCA
CAATTTGGAGACGTTCTTTTATAATTATGTGTTGATTTCGTTTGTTGTAC
TGCTGTTGTGCGGCTTGTTTCACCCCATGAGGGCGTTGGCGCTGGCCGCC
ATGGTGTTGGGCGCCGTGCTGCTGTACATCATCTTCCCGGAGGACTACCG
CGTGTCGGATAGCTTCTCCATCACCAAGCCCATCAAGCATGTGTTCATGA
CCGTGTTCGCTCTGCTCGTGCTTACCGTTGGCCATGTGTTCAACTTCCTG
TTCCTGGTGGTGTGTATCACCGTTCCCATCGTGTTGCTGCACGCCTTCTT
CCGTGAACATGATGCGTCCACAGCTCTGGACAATGCGCATATCTGA
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Coding sequence (CDS) from alignment at NODE_1524_length_9953_cov_3.701683:1770..2465-

>Gcaud9343.t2 ID=Gcaud9343.t2|Name=Gcaud9343.t2|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=696bp|location=Sequence derived from alignment at NODE_1524_length_9953_cov_3.701683:1770..2465- (Gracilaria caudata M_176_S67 male)
ATGGCTGCTAGCATGCCGGCTGCTTATTCGAATATCGATGATGCGTCGCG
TCCGGCAGACCCGCCGGCCGCAGAGCCGCCGCTCAAGCCGTCCGCGGTGG
ACCGAGTGCATGCGGTTGCGCGCGGCGCCCAGACCGTGGCTACCGACGCT
ACGCAGTCGGTGAAGGAATTCTTGCAGGCTCCCATGCCGCAGATGAGCAT
ATACACGGAGCCTTTCAACCCGTCGGAGACGCACTCCATGCGCGATCGCT
TCCAAATGGTGTGCGATAACTGTCGCAGATGGTCGGAGTTTGCGGACGTG
AGCACCATGAACGCGCCGGCGGCGTCGGAGGTGAAGCGGAGGATTGCGCA
CAATTTGGAGACGTTCTTTTATAATTATGTGTTGATTTCGTTTGTTGTAC
TGCTGTTGTGCGGCTTGTTTCACCCCATGAGGGCGTTGGCGCTGGCCGCC
ATGGTGTTGGGCGCCGTGCTGCTGTACATCATCTTCCCGGAGGACTACCG
CGTGTCGGATAGCTTCTCCATCACCAAGCCCATCAAGCATGTGTTCATGA
CCGTGTTCGCTCTGCTCGTGCTTACCGTTGGCCATGTGTTCAACTTCCTG
TTCCTGGTGGTGTGTATCACCGTTCCCATCGTGTTGCTGCACGCCTTCTT
CCGTGAACATGATGCGTCCACAGCTCTGGACAATGCGCATATCTGA
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