Gcaud9343.t2 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9343.t2
Unique NameGcaud9343.t2
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length232
Homology
BLAST of Gcaud9343.t2 vs. uniprot
Match: A0A2V3J324_9FLOR (PRA1 family protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J324_9FLOR)

HSP 1 Score: 300 bits (769), Expect = 1.340e-100
Identity = 152/233 (65.24%), Postives = 189/233 (81.12%), Query Frame = 0
Query:    3 ASMPAAYSNIDDAS-RPADPPAAEPPL---KPSAVDRVHAVARGAQTVATDATQSVKEFLQAPMPQMSIYTEPFNPSETHSMRDRFQMVCDNCRRWSEFADVSTMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLLCGLFHPMRALALAAMVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVFALLVLTVGHVFNFLFLVVCITVPIVLLHAFFREHDASTALDNAHI 231
            A++ A Y N+DDA+ RPADPP A  PL     SA  RV AVARGAQ  A DATQSVK+FL APMPQ+S+YT+PFNPS + S RDR Q+VCDNCR W EFA++S +NAP A+EVKRR+AHNLETFFYNYV+++F VLL+ G+ HP+ ALALA ++    +LYI+FPEDYRV+D+F I+KPIKHVF+T+ ALLVLTVGHV NFLFLVVCI +PIVLLH+ FREHD + A+++ H+
Sbjct:    2 AAVTAGYRNLDDATARPADPPNASHPLPQHNASAASRVQAVARGAQNAAADATQSVKDFLSAPMPQLSLYTDPFNPSASLSARDRLQLVCDNCRPWREFAELSAINAPPAAEVKRRVAHNLETFFYNYVVVAFAVLLIAGVLHPLSALALAVLLFAIFMLYIMFPEDYRVTDTFHISKPIKHVFITLLALLVLTVGHVLNFLFLVVCIALPIVLLHSLFREHDPNAAVESLHV 234          
BLAST of Gcaud9343.t2 vs. uniprot
Match: R7QRI6_CHOCR (PRA1 family protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRI6_CHOCR)

HSP 1 Score: 166 bits (420), Expect = 1.370e-48
Identity = 83/167 (49.70%), Postives = 113/167 (67.66%), Query Frame = 0
Query:   62 MPQMSIYTEPFNPSETHSMRDRFQMVCDNCRRWSEFADVSTMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLLCGLFHPMRALALAAMVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVFALLVLTVGHVFNFLFLVVCITVPIVLLHAFFREHDASTALDN 228
            MP  + Y EP NP+  +S++DR Q+V ++CR W+EF D      P ASE K R+ HN+E FFYNY++++  +L +  +FHP+RA+ LAA V  A +LYI+FPEDY+V+D+  I+ PIKH  M V  +LVL VGHVF  LF V     PIVL+HAF R+H A+ A  N
Sbjct:    1 MPDFNPYVEPLNPAAQYSLKDRAQLVVESCRPWAEFLDPHAFAPPPASEAKLRVGHNVEVFFYNYLVLAMALLAVFAVFHPVRAVLLAATVAVAAVLYILFPEDYQVTDNIVISMPIKHAVMAVLTVLVLVVGHVFALLFWVAVTFAPIVLVHAFLRQHSAAPADAN 167          
BLAST of Gcaud9343.t2 vs. uniprot
Match: A0A5J4YMQ5_PORPP (PRA1 family protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YMQ5_PORPP)

HSP 1 Score: 108 bits (271), Expect = 1.020e-25
Identity = 62/168 (36.90%), Postives = 92/168 (54.76%), Query Frame = 0
Query:   53 SVKEFLQAPMPQMSIYTEPFNPSETHSMRDRFQMVCDNCRRWSEFADVSTMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLLCGLFHPMRALALAAMVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVFALLVLTVGHVFNFLFLVVCITVPIVLLHAFFREH 220
            +VK+ + A M  + IYTEP  P    S++DR  +V ++ R W EF   S MN P A E+  R +HN+ETFFYNYVL++ + L+     HP+  L+L      AV  Y++ PE   +     +  P KH+ M V A + L  GH+   +  +    + +V LHA FR+H
Sbjct:   40 NVKDAVSAMMKDVKIYTEPIQPGSEMSLKDRVVVVWESARPWGEFFRPSAMNKPPAGEMGARFSHNVETFFYNYVLLAVLFLVSMFFIHPIATLSLCVCGAFAVYAYVLHPEPIEIGGR-VLETPAKHIAMAVLAGIALLFGHMGGLIVSLAVFLMVVVGLHAVFRDH 206          
BLAST of Gcaud9343.t2 vs. uniprot
Match: M2Y8S7_GALSU (PRA1 family protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y8S7_GALSU)

HSP 1 Score: 65.5 bits (158), Expect = 4.050e-9
Identity = 35/125 (28.00%), Postives = 64/125 (51.20%), Query Frame = 0
Query:   67 IYTEPFNPSETHSMRDRFQMVCDNCRRWSEFADVSTMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLLCGLFHPMRALALAAMVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVFALLVL 191
            ++T PF P++   +RDR  ++  + + W +F D+ + + P       R+A NL+++ YNYV+      L   LFHP+  L+L    L  V L++++P          ++  IK +  +  AL+ L
Sbjct:  104 LFTTPFEPNQELGVRDRLTLIWGSAKPWKDFLDIRSFSIPPMDSWSTRVATNLQSYLYNYVICVTFFCLFLLLFHPLGILSLFLETLLVVALFLVYPGHTETGLLGVVSPTIKVIVASAMALIFL 228          
The following BLAST results are available for this feature:
BLAST of Gcaud9343.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3J324_9FLOR1.340e-10065.24PRA1 family protein n=1 Tax=Gracilariopsis chorda ... [more]
R7QRI6_CHOCR1.370e-4849.70PRA1 family protein n=1 Tax=Chondrus crispus TaxID... [more]
A0A5J4YMQ5_PORPP1.020e-2536.90PRA1 family protein n=1 Tax=Porphyridium purpureum... [more]
M2Y8S7_GALSU4.050e-928.00PRA1 family protein n=1 Tax=Galdieria sulphuraria ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004895Prenylated rab acceptor PRA1PFAMPF03208PRA1coord: 90..225
e-value: 1.6E-21
score: 76.4
IPR004895Prenylated rab acceptor PRA1PANTHERPTHR19317PRENYLATED RAB ACCEPTOR 1-RELATEDcoord: 57..221
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR19317:SF0PRENYLATED RAB ACCEPTOR PROTEIN 1coord: 57..221
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 163..181
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..140
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 145..162
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..121
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 214..231
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 182..213
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 141..144
NoneNo IPR availableTMHMMTMhelixcoord: 145..162
NoneNo IPR availableTMHMMTMhelixcoord: 122..141
NoneNo IPR availableTMHMMTMhelixcoord: 182..213

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1524_length_9953_cov_3.701683contigNODE_1524_length_9953_cov_3.701683:1770..2465 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9343.t2Gcaud9343.t2Gracilaria caudata M_176_S67 malemRNANODE_1524_length_9953_cov_3.701683 1770..2465 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9343.t2 ID=Gcaud9343.t2|Name=Gcaud9343.t2|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=232bp
MAASMPAAYSNIDDASRPADPPAAEPPLKPSAVDRVHAVARGAQTVATDA
TQSVKEFLQAPMPQMSIYTEPFNPSETHSMRDRFQMVCDNCRRWSEFADV
STMNAPAASEVKRRIAHNLETFFYNYVLISFVVLLLCGLFHPMRALALAA
MVLGAVLLYIIFPEDYRVSDSFSITKPIKHVFMTVFALLVLTVGHVFNFL
FLVVCITVPIVLLHAFFREHDASTALDNAHI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004895Prenylated_rab_accept_PRA1