Gcaud2538.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2538.t1
Unique NameGcaud2538.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length467
Homology
BLAST of Gcaud2538.t1 vs. uniprot
Match: A0A2V3J669_9FLOR (Indian hedgehog B protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J669_9FLOR)

HSP 1 Score: 508 bits (1309), Expect = 2.300e-175
Identity = 258/472 (54.66%), Postives = 348/472 (73.73%), Query Frame = 0
Query:    1 MRFVLLLCAVLPAVCAAPFLVTERHVAHD----RSSELPSRAADIDGATFVLVARSEGCVPSIAHGSVKYPPFDEGVSLALNLSPPEALIPFDDITVDGAICEREELNDVLALYDPAKIALTDVGVNADDIPHIYVAGVDAAGRTCGSSSYDPRVYLYTSQLQHLFRANQRFGGVEIQVTERDLEHQPTAMYMLSIPRNAAENACLYRRRIQSDDDTA--PSLSNDEEPNASXXXXXXXXXXXXSASQTDDPADEAQDISQPAGPSTFTTAKEQAVLDEEREAQMARERKRRCFPHSATVRLENGQRIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSVTASHFIYLDSNLVPAGSAKVGQQVQLEDGSLSTISHVSIVQSAGLYNPQTLHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGDALMSAFRA--PLSFLS 464
            MR ++L    +P V A P++V +RH  H+     +S LP R ADI+ +TFVLV ++EGC+  I+HG V+YPPF+ GV+LALNLSPPEALIPFD+I+V G  C  E+L++VLALYDP+KIALTDVGVNADDIPHIYVAGVDA  RTCG S  +PRVYL+TS LQHLFRANQR GGVE+ ++ER +E  P A YMLS+PR+ ++NACLYRRR     ++A  P++ +D  P+              S ++T++P   ++ +S P  P+TF+ A ++A   EE+EA  + ++   CFP SA V+LENG RIPM+ +++GHRVLVAP  FS VFMFTH+++N++S+F++IRT+ G+ LS+TASH+IYLDS+LVPA  A  GQQVQL DG +S I+ VS V+ +GLYNPQTLHGDI+VDNIR S+YT+A++P +AHS+LAPLR +FD F  Y + L+NGG  ++   +   P  F+S
Sbjct:    1 MRGLILALLTIPLVVATPYIVEKRHAVHEDTPASTSPLP-READIENSTFVLVTKTEGCINRISHGIVRYPPFEPGVALALNLSPPEALIPFDNISVSGQTCSHEDLHEVLALYDPSKIALTDVGVNADDIPHIYVAGVDAGSRTCGKSRLEPRVYLFTSNLQHLFRANQRLGGVELDISERSVEDDPKAAYMLSVPRSKSQNACLYRRRPLHIPESAKEPAIRDDPRPSPEEDDE--------STAETEEPNSGSETLSGPERPNTFSVANDEAQKLEEQEALKSEDK---CFPGSAMVQLENGHRIPMSDVRIGHRVLVAPETFSTVFMFTHRVDNVLSEFIQIRTETGEILSLTASHYIYLDSSLVPAKYATTGQQVQLSDGRVSFITAVSTVRDSGLYNPQTLHGDIVVDNIRVSSYTDAVKPHIAHSMLAPLRAVFDRFGFYVTGLENGGGTVLRTIQKLIPSVFIS 460          
BLAST of Gcaud2538.t1 vs. uniprot
Match: R7QIA6_CHOCR (HintN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIA6_CHOCR)

HSP 1 Score: 182 bits (462), Expect = 1.360e-48
Identity = 89/168 (52.98%), Postives = 120/168 (71.43%), Query Frame = 0
Query:  287 CFPHSATVRLENGQRIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSVTASHFIYLDSNLVPAGSAKVGQQVQLEDGSLSTISHVSIVQSAGLYNPQTLHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGDALMS 454
            CFP  A+V LENG    M Q+++G RV VA G FS VFMFTHK  + V DFVRI T  G  LS T  H+IY+++    AGSAKVG  ++L DGS + +S+V IV+  GL+NPQT+HGDIIV+++R ST+T  I+P  A ++LAPLR+L+DTF + T+ L+NG D++ S
Sbjct:  285 CFPADASVELENGSFKTMAQVELGDRVKVADGSFSDVFMFTHKDASAVHDFVRISTRSGASLSATRGHYIYINNAFAAAGSAKVGDTLELGDGSKTLVSNVGIVKGTGLFNPQTVHGDIIVNSVRASTFTRTIEPSAAQAMLAPLRMLYDTFGISTAFLNNGADSIAS 452          
BLAST of Gcaud2538.t1 vs. uniprot
Match: A0A2V3IRZ6_9FLOR (Indian hedgehog B protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRZ6_9FLOR)

HSP 1 Score: 164 bits (414), Expect = 7.880e-42
Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = 0
Query:  287 CFPHSATVRLENGQRIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSVTASHFIYLDSNLVPAGSAKVGQQVQLEDGSLSTISHVSIVQSAGLYNPQTLHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGDAL 452
            CFP  ATV +E+G    M Q+Q+G RV V   +FS VFMFTHK++  VS FV++    G  +S T+ H++YL+  L  A +AKVG  ++L +G+ ST+  VS+V+ +GLYNPQTLHGDIIV+ +R ST+T AI+   A ++LAPLR+++D F   TS  D G D +
Sbjct:  272 CFPAEATVEMEDGSTKRMDQVQIGDRVKVGYDMFSEVFMFTHKVSKRVSQFVKLDMASGASISATSGHYVYLNGRLAAARTAKVGDVMELGNGARSTVEKVSMVRKSGLYNPQTLHGDIIVNEVRASTFTTAIEAGTAQAMLAPLRMVYDVFGWSTSAFDGGFDMI 437          
BLAST of Gcaud2538.t1 vs. uniprot
Match: A0A2V3IX71_9FLOR (Indian hedgehog B protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX71_9FLOR)

HSP 1 Score: 160 bits (406), Expect = 2.130e-40
Identity = 76/168 (45.24%), Postives = 111/168 (66.07%), Query Frame = 0
Query:  287 CFPHSATVRLENGQRIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSVTASHFIYLDSNLVPAGSAKVGQQVQLEDGSLSTISHVSIVQSAGLYNPQTLHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGDALMS 454
            CFP  ATV+LE+G    M  +Q+G RV+V  G+FSPVFMFTHKL+ +   FV I+T  G+ LS+T  H++Y++ +L  A + K G  + L D SL+ ++ VS V S GL+NPQTLHGDI+V+ ++ STYT A++P +AH++L+PLR  +          + G D + S
Sbjct:  310 CFPADATVQLEDGSAKKMGDVQLGDRVMVDHGIFSPVFMFTHKLSTVRYGFVNIQTSSGNTLSLTPGHYLYVNGHLSAASTVKNGDTLMLADSSLTDVTQVSTVTSTGLFNPQTLHGDIVVNGLKASTYTTAVEPGLAHALLSPLRAAYSRLGFSLRAFEAGADRIAS 477          
BLAST of Gcaud2538.t1 vs. uniprot
Match: UPI001E1DDBBD (warthog protein 6-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DDBBD)

HSP 1 Score: 152 bits (384), Expect = 7.280e-39
Identity = 74/168 (44.05%), Postives = 106/168 (63.10%), Query Frame = 0
Query:  287 CFPHSATVRLENGQRIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSVTASHFIYLDSNLVPAGSAKVGQQVQLEDGSLSTISHVSIVQSAGLYNPQTLHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGDALMS 454
            CFP SA V LE+G R  M ++++G RV V    FS VFMFTHK +  + DFV+I T  G  +S+T  H+I+++  L  A    VG  +QL  G  + ++ V+ VQS G+YNPQTLHGDI+V  IR STYT A++P +AH+ L  +R ++  F +  S  + G D++ S
Sbjct:  132 CFPGSAMVELESGARQRMDKMKIGDRVKVGRAEFSEVFMFTHKTHTGIYDFVKITTSSGHSVSLTGGHYIHVNGGLAAASVVAVGDMLQLGTGEATEVTDVTCVQSKGIYNPQTLHGDIVVGGIRVSTYTTAVEPRLAHAGLGAIRSMYRIFGLTFSMFEQGADSIAS 299          
BLAST of Gcaud2538.t1 vs. uniprot
Match: A0A2V3J2J0_9FLOR (Temptin n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2J0_9FLOR)

HSP 1 Score: 152 bits (383), Expect = 6.060e-38
Identity = 79/153 (51.63%), Postives = 103/153 (67.32%), Query Frame = 0
Query:  287 CFPHSATVRLENGQRIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSVTASHFIYLDSNLVPAGSAKVGQQVQLEDGSLSTISHVSIVQSAGLYNPQTLHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFA 439
            CFP  A VRLE+G    M QLQ+G RV V  G++SP+FMFTH+   I   FV I+TD+   L++T+ HF+Y +   V A + +VG  VQLEDGS S ++ VS   S GLYNPQTLHGD+IV+ +R +TYT AI   +AHS+L PLR  + T A
Sbjct:  214 CFPAHAQVRLEDGSVRRMDQLQIGDRVHVGNGIYSPIFMFTHQHARIRYPFVIIQTDKQHSLTLTSGHFMYANDASVRASAVRVGDYVQLEDGSKSLVTAVSKHISNGLYNPQTLHGDLIVNGVRVTTYTSAIHLTLAHSLLTPLRAFYQTCA 366          
BLAST of Gcaud2538.t1 vs. uniprot
Match: A0A2V3IGP9_9FLOR (Warthog protein 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGP9_9FLOR)

HSP 1 Score: 150 bits (380), Expect = 8.790e-37
Identity = 77/168 (45.83%), Postives = 108/168 (64.29%), Query Frame = 0
Query:  287 CFPHSATVRLENGQRIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSVTASHFIYLDSNLVPAGSAKVGQQVQLEDGSLSTISHVSIVQSAGLYNPQTLHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGDALMS 454
            CFP  ATV LE+G    M  +++G RV VA G FSPVFMFTHK+  I   FVR+    G  L +T  H++Y++ +L  A S  VG  ++ + G +S +S V+ V S GLYNPQT++G+I+V+ +R STYT A++   AHS+L PLR +F    + ++ LDNG D L S
Sbjct:  306 CFPAHATVELEDGSFKTMDSIELGDRVKVASGEFSPVFMFTHKMAGISYSFVRLTASSGHSLELTKGHYLYVNGDLAAAESVHVGDSIETDAGVVS-VSAVARVVSRGLYNPQTVNGNIVVNGVRASTYTTAVEIKTAHSLLLPLRAVFRLAGMTSAMLDNGSDKLAS 472          
BLAST of Gcaud2538.t1 vs. uniprot
Match: R7Q619_CHOCR (HintN domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q619_CHOCR)

HSP 1 Score: 144 bits (362), Expect = 2.110e-36
Identity = 72/166 (43.37%), Postives = 103/166 (62.05%), Query Frame = 0
Query:  287 CFPHSATVRLENGQRIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSVTASHFIYLDSNLVPAGSAKVGQQVQLEDGSLSTISHVSIVQSAGLYNPQTLHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGDAL 452
            CFP +A V LENG    M+Q+Q+G RV V P  FS VFMFTHK   I   FV + T  G  LS+T  H++Y++  +  A + + G  + L DG+ S+++ V    + GLYNPQT+HGDIIV+ +  +TYT  ++  +AH++LAPLR ++ +     S LD G D L
Sbjct:   69 CFPANALVELENGATKMMSQVQLGDRVRVGPNDFSDVFMFTHKTAAIKYSFVTLATQSGHTLSLTKGHYLYVNGVVAAAKTVRSGDFITLADGTTSSVTQVGTEIARGLYNPQTVHGDIIVNGLLATTYTTTVERSMAHALLAPLRAVYSSIGWSMSALDAGADRL 234          
BLAST of Gcaud2538.t1 vs. uniprot
Match: A0A1X6NXN0_PORUM (HintN domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NXN0_PORUM)

HSP 1 Score: 148 bits (374), Expect = 4.150e-35
Identity = 73/168 (43.45%), Postives = 106/168 (63.10%), Query Frame = 0
Query:  287 CFPHSATVRLENGQRIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSVTASHFIYLDSNLVPAGSAKVGQQVQL--EDGSLSTISHVSIVQSAGLYNPQTLHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGDAL 452
            CFP  ATV L +G+ +PM  + +G  V V+   +SPVF+FTH++      FVR+ T  G  L+ TA H++Y +  L  AG+ +VG +++   +  + + ++  + V   GLYNPQTLHGDI+V+ IR STYT AI+P VA ++LAPLR LF    + T+ LD G D L
Sbjct:  480 CFPADATVELADGRTVPMADVALGDHVRVSATAYSPVFLFTHRVRGGRRPFVRLTTAAGASLTATAGHYVYANGRLTAAGAVRVGDRLETVGDAATCTVVTATARVAGTGLYNPQTLHGDIVVNGIRASTYTMAIEPAVASTLLAPLRALFRLAGLTTTALDGGADRL 647          
BLAST of Gcaud2538.t1 vs. uniprot
Match: A0A1X6P3Z4_PORUM (HintN domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P3Z4_PORUM)

HSP 1 Score: 144 bits (362), Expect = 5.510e-35
Identity = 77/167 (46.11%), Postives = 103/167 (61.68%), Query Frame = 0
Query:  287 CFPHSATVRLENGQRIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSVTASHFIYLDSNLVPAGSAKVGQQVQLEDGS-LSTISHVSIVQSAGLYNPQTLHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGDAL 452
            CFP SA V L+ G+ + M QL VG  V V+   FS VF+FTHK+      FV++ T  G  L+VT SH++Y +  +  AG+ K+G +++L   +    I+  S V   GLYNPQTLHGDI V+ IR ST+T A++P VA ++LAPLR LF    V TS LD G   L
Sbjct:  208 CFPASAQVELDTGRTVTMDQLAVGDNVRVSADAFSRVFLFTHKVAAGSFPFVKLTTASGASLTVTRSHYVYANGKMTAAGAVKLGDELELVGAAKCDIITATSPVTETGLYNPQTLHGDIFVNGIRASTFTTAVEPRVASALLAPLRALFRATGVSTSALDAGSARL 374          
The following BLAST results are available for this feature:
BLAST of Gcaud2538.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J669_9FLOR2.300e-17554.66Indian hedgehog B protein n=1 Tax=Gracilariopsis c... [more]
R7QIA6_CHOCR1.360e-4852.98HintN domain-containing protein n=1 Tax=Chondrus c... [more]
A0A2V3IRZ6_9FLOR7.880e-4248.19Indian hedgehog B protein n=1 Tax=Gracilariopsis c... [more]
A0A2V3IX71_9FLOR2.130e-4045.24Indian hedgehog B protein n=1 Tax=Gracilariopsis c... [more]
UPI001E1DDBBD7.280e-3944.05warthog protein 6-like n=1 Tax=Mercenaria mercenar... [more]
A0A2V3J2J0_9FLOR6.060e-3851.63Temptin n=1 Tax=Gracilariopsis chorda TaxID=448386... [more]
A0A2V3IGP9_9FLOR8.790e-3745.83Warthog protein 6 n=1 Tax=Gracilariopsis chorda Ta... [more]
R7Q619_CHOCR2.110e-3643.37HintN domain-containing protein n=1 Tax=Chondrus c... [more]
A0A1X6NXN0_PORUM4.150e-3543.45HintN domain-containing protein n=1 Tax=Porphyra u... [more]
A0A1X6P3Z4_PORUM5.510e-3546.11HintN domain-containing protein n=1 Tax=Porphyra u... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003587Hint domain N-terminalSMARTSM00306hint_7coord: 285..378
e-value: 1.6E-10
score: 51.0
NoneNo IPR availableGENE3D2.170.16.10Hedgehog/Intein (Hint) domaincoord: 287..416
e-value: 2.0E-31
score: 111.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..282
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..245
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..282
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..267
NoneNo IPR availablePANTHERPTHR46706FAMILY NOT NAMEDcoord: 216..440
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 12..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..16
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 17..466
NoneNo IPR availableCDDcd00081Hintcoord: 287..410
e-value: 3.84049E-12
score: 61.5162
IPR001767Hedgehog protein, Hint domainPFAMPF01079Hintcoord: 282..438
e-value: 2.8E-30
score: 105.4
IPR036844Hint domain superfamilySUPERFAMILY51294Hedgehog/intein (Hint) domaincoord: 287..415

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_146_length_43567_cov_5.009154contigNODE_146_length_43567_cov_5.009154:11132..12532 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2538.t1Gcaud2538.t1Gracilaria caudata M_176_S67 malemRNANODE_146_length_43567_cov_5.009154 11132..12532 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2538.t1 ID=Gcaud2538.t1|Name=Gcaud2538.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=467bp
MRFVLLLCAVLPAVCAAPFLVTERHVAHDRSSELPSRAADIDGATFVLVA
RSEGCVPSIAHGSVKYPPFDEGVSLALNLSPPEALIPFDDITVDGAICER
EELNDVLALYDPAKIALTDVGVNADDIPHIYVAGVDAAGRTCGSSSYDPR
VYLYTSQLQHLFRANQRFGGVEIQVTERDLEHQPTAMYMLSIPRNAAENA
CLYRRRIQSDDDTAPSLSNDEEPNASAEADEDEDEDEESASQTDDPADEA
QDISQPAGPSTFTTAKEQAVLDEEREAQMARERKRRCFPHSATVRLENGQ
RIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSV
TASHFIYLDSNLVPAGSAKVGQQVQLEDGSLSTISHVSIVQSAGLYNPQT
LHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGD
ALMSAFRAPLSFLSSV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003587Hint_dom_N
IPR001767Hedgehog_Hint
IPR036844Hint_dom_sf