Gcaud2538.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2538.t1
Unique Name	Gcaud2538.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	467

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_146_length_43567_cov_5.009154	contig	NODE_146_length_43567_cov_5.009154:11132..12532 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ07231
PFAMs	Ground-like,Hint,Kelch_4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06224,ko:K11990,ko:K16669
KEGG Pathway	ko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG Module	M00678
GOs	GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue	1.57e-17
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota
Description	intein-mediated protein splicing
COG category	M
BRITE	ko00000,ko00001,ko00002,ko00536,ko01002,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2538	Gcaud2538	Gracilaria caudata M_176_S67 male	gene	NODE_146_length_43567_cov_5.009154 11132..12532 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2538.t1.stop1	Gcaud2538.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_146_length_43567_cov_5.009154 11132..11134 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2538.t1.CDS1	Gcaud2538.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_146_length_43567_cov_5.009154 11132..12532 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2538.t1.exon1	Gcaud2538.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_146_length_43567_cov_5.009154 11132..12532 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2538.t1.start1	Gcaud2538.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_146_length_43567_cov_5.009154 12530..12532 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2538.t1	Gcaud2538.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_146_length_43567_cov_5.009154 11132..12532 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_146_length_43567_cov_5.009154:11132..12532-
coding sequence from alignment at NODE_146_length_43567_cov_5.009154:11132..12532-

mRNA sequence

>Gcaud2538.t1 ID=Gcaud2538.t1|Name=Gcaud2538.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=467bp
MRFVLLLCAVLPAVCAAPFLVTERHVAHDRSSELPSRAADIDGATFVLVA
RSEGCVPSIAHGSVKYPPFDEGVSLALNLSPPEALIPFDDITVDGAICER
EELNDVLALYDPAKIALTDVGVNADDIPHIYVAGVDAAGRTCGSSSYDPR
VYLYTSQLQHLFRANQRFGGVEIQVTERDLEHQPTAMYMLSIPRNAAENA
CLYRRRIQSDDDTAPSLSNDEEPNASAEADEDEDEDEESASQTDDPADEA
QDISQPAGPSTFTTAKEQAVLDEEREAQMARERKRRCFPHSATVRLENGQ
RIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSV
TASHFIYLDSNLVPAGSAKVGQQVQLEDGSLSTISHVSIVQSAGLYNPQT
LHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGD
ALMSAFRAPLSFLSSV*

spliced messenger RNA

>Gcaud2538.t1 ID=Gcaud2538.t1|Name=Gcaud2538.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:11132..12532- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCGTGCTGTTGTTATGCGCTGTGTTGCCAGCGGTGTGCGCGGC
ACCGTTTCTGGTAACGGAGCGACACGTCGCGCATGATCGCTCCTCCGAGC
TGCCGTCTCGCGCCGCAGACATTGACGGTGCCACCTTCGTGCTGGTTGCG
CGCTCGGAAGGCTGCGTGCCGAGTATTGCCCATGGTTCCGTGAAGTATCC
GCCGTTTGATGAAGGCGTGTCGCTCGCGCTCAACCTGTCACCGCCAGAGG
CGCTTATTCCGTTCGACGACATCACCGTCGACGGCGCTATTTGCGAGAGA
GAAGAACTGAATGACGTCCTCGCCTTATATGACCCCGCTAAAATTGCTCT
CACCGATGTCGGCGTCAACGCCGATGACATTCCGCACATTTACGTCGCTG
GCGTCGATGCCGCGGGTAGGACTTGTGGCTCATCTTCGTATGACCCCAGA
GTGTACCTCTACACCTCACAGCTTCAACATCTGTTCAGAGCCAACCAGCG
GTTTGGTGGCGTTGAAATCCAGGTGACCGAACGTGATCTTGAGCACCAAC
CAACCGCCATGTACATGCTCTCAATCCCTCGCAATGCTGCTGAGAATGCC
TGCCTCTACCGTCGTCGCATACAGAGCGATGATGATACGGCACCTAGTTT
GAGCAACGACGAAGAACCAAACGCCTCCGCCGAGGCAGATGAAGACGAAG
ACGAAGACGAAGAATCCGCCTCACAAACTGATGACCCGGCGGATGAAGCA
CAAGATATTTCTCAACCTGCAGGCCCGAGCACCTTCACTACCGCCAAAGA
ACAAGCCGTGTTGGACGAGGAAAGGGAGGCCCAGATGGCAAGAGAAAGGA
AGAGGAGATGCTTTCCGCATTCAGCTACTGTCCGACTGGAGAACGGCCAG
CGCATTCCTATGACTCAACTTCAAGTTGGTCATCGCGTGCTTGTCGCTCC
TGGCGTATTCTCCCCCGTCTTTATGTTCACACATAAGCTCAACAATATCG
TCAGCGACTTTGTGCGCATCCGTACCGACCGCGGCGATCAACTGTCTGTT
ACCGCCTCGCATTTCATCTACCTTGACTCTAATCTTGTACCTGCCGGCTC
CGCTAAAGTCGGACAGCAAGTTCAACTTGAAGACGGAAGCCTTTCAACTA
TATCTCACGTATCCATCGTTCAGAGCGCAGGATTGTACAACCCGCAAACC
CTTCATGGAGATATCATTGTCGACAACATTCGCTGTTCGACCTACACCGA
AGCCATCCAGCCTATAGTTGCACACTCTGTACTTGCTCCTCTTCGTCTTC
TGTTTGACACATTTGCGGTTTATACCTCACAGTTGGACAACGGCGGTGAT
GCTCTTATGAGCGCTTTTCGAGCACCGTTGTCTTTCCTTTCTAGCGTGTA
G

protein sequence of Gcaud2538.t1

>Gcaud2538.t1 ID=Gcaud2538.t1|Name=Gcaud2538.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=467bp
MRFVLLLCAVLPAVCAAPFLVTERHVAHDRSSELPSRAADIDGATFVLVA
RSEGCVPSIAHGSVKYPPFDEGVSLALNLSPPEALIPFDDITVDGAICER
EELNDVLALYDPAKIALTDVGVNADDIPHIYVAGVDAAGRTCGSSSYDPR
VYLYTSQLQHLFRANQRFGGVEIQVTERDLEHQPTAMYMLSIPRNAAENA
CLYRRRIQSDDDTAPSLSNDEEPNASAEADEDEDEDEESASQTDDPADEA
QDISQPAGPSTFTTAKEQAVLDEEREAQMARERKRRCFPHSATVRLENGQ
RIPMTQLQVGHRVLVAPGVFSPVFMFTHKLNNIVSDFVRIRTDRGDQLSV
TASHFIYLDSNLVPAGSAKVGQQVQLEDGSLSTISHVSIVQSAGLYNPQT
LHGDIIVDNIRCSTYTEAIQPIVAHSVLAPLRLLFDTFAVYTSQLDNGGD
ALMSAFRAPLSFLSSV*

mRNA from alignment at NODE_146_length_43567_cov_5.009154:11132..12532-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2538.t1 ID=Gcaud2538.t1|Name=Gcaud2538.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1401bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:11132..12532- (Gracilaria caudata M_176_S67 male)
ATGCGCTTCGTGCTGTTGTTATGCGCTGTGTTGCCAGCGGTGTGCGCGGC
ACCGTTTCTGGTAACGGAGCGACACGTCGCGCATGATCGCTCCTCCGAGC
TGCCGTCTCGCGCCGCAGACATTGACGGTGCCACCTTCGTGCTGGTTGCG
CGCTCGGAAGGCTGCGTGCCGAGTATTGCCCATGGTTCCGTGAAGTATCC
GCCGTTTGATGAAGGCGTGTCGCTCGCGCTCAACCTGTCACCGCCAGAGG
CGCTTATTCCGTTCGACGACATCACCGTCGACGGCGCTATTTGCGAGAGA
GAAGAACTGAATGACGTCCTCGCCTTATATGACCCCGCTAAAATTGCTCT
CACCGATGTCGGCGTCAACGCCGATGACATTCCGCACATTTACGTCGCTG
GCGTCGATGCCGCGGGTAGGACTTGTGGCTCATCTTCGTATGACCCCAGA
GTGTACCTCTACACCTCACAGCTTCAACATCTGTTCAGAGCCAACCAGCG
GTTTGGTGGCGTTGAAATCCAGGTGACCGAACGTGATCTTGAGCACCAAC
CAACCGCCATGTACATGCTCTCAATCCCTCGCAATGCTGCTGAGAATGCC
TGCCTCTACCGTCGTCGCATACAGAGCGATGATGATACGGCACCTAGTTT
GAGCAACGACGAAGAACCAAACGCCTCCGCCGAGGCAGATGAAGACGAAG
ACGAAGACGAAGAATCCGCCTCACAAACTGATGACCCGGCGGATGAAGCA
CAAGATATTTCTCAACCTGCAGGCCCGAGCACCTTCACTACCGCCAAAGA
ACAAGCCGTGTTGGACGAGGAAAGGGAGGCCCAGATGGCAAGAGAAAGGA
AGAGGAGATGCTTTCCGCATTCAGCTACTGTCCGACTGGAGAACGGCCAG
CGCATTCCTATGACTCAACTTCAAGTTGGTCATCGCGTGCTTGTCGCTCC
TGGCGTATTCTCCCCCGTCTTTATGTTCACACATAAGCTCAACAATATCG
TCAGCGACTTTGTGCGCATCCGTACCGACCGCGGCGATCAACTGTCTGTT
ACCGCCTCGCATTTCATCTACCTTGACTCTAATCTTGTACCTGCCGGCTC
CGCTAAAGTCGGACAGCAAGTTCAACTTGAAGACGGAAGCCTTTCAACTA
TATCTCACGTATCCATCGTTCAGAGCGCAGGATTGTACAACCCGCAAACC
CTTCATGGAGATATCATTGTCGACAACATTCGCTGTTCGACCTACACCGA
AGCCATCCAGCCTATAGTTGCACACTCTGTACTTGCTCCTCTTCGTCTTC
TGTTTGACACATTTGCGGTTTATACCTCACAGTTGGACAACGGCGGTGAT
GCTCTTATGAGCGCTTTTCGAGCACCGTTGTCTTTCCTTTCTAGCGTGTA
G

Coding sequence (CDS) from alignment at NODE_146_length_43567_cov_5.009154:11132..12532-

>Gcaud2538.t1 ID=Gcaud2538.t1|Name=Gcaud2538.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1401bp|location=Sequence derived from alignment at NODE_146_length_43567_cov_5.009154:11132..12532- (Gracilaria caudata M_176_S67 male)
ATGCGCTTCGTGCTGTTGTTATGCGCTGTGTTGCCAGCGGTGTGCGCGGC
ACCGTTTCTGGTAACGGAGCGACACGTCGCGCATGATCGCTCCTCCGAGC
TGCCGTCTCGCGCCGCAGACATTGACGGTGCCACCTTCGTGCTGGTTGCG
CGCTCGGAAGGCTGCGTGCCGAGTATTGCCCATGGTTCCGTGAAGTATCC
GCCGTTTGATGAAGGCGTGTCGCTCGCGCTCAACCTGTCACCGCCAGAGG
CGCTTATTCCGTTCGACGACATCACCGTCGACGGCGCTATTTGCGAGAGA
GAAGAACTGAATGACGTCCTCGCCTTATATGACCCCGCTAAAATTGCTCT
CACCGATGTCGGCGTCAACGCCGATGACATTCCGCACATTTACGTCGCTG
GCGTCGATGCCGCGGGTAGGACTTGTGGCTCATCTTCGTATGACCCCAGA
GTGTACCTCTACACCTCACAGCTTCAACATCTGTTCAGAGCCAACCAGCG
GTTTGGTGGCGTTGAAATCCAGGTGACCGAACGTGATCTTGAGCACCAAC
CAACCGCCATGTACATGCTCTCAATCCCTCGCAATGCTGCTGAGAATGCC
TGCCTCTACCGTCGTCGCATACAGAGCGATGATGATACGGCACCTAGTTT
GAGCAACGACGAAGAACCAAACGCCTCCGCCGAGGCAGATGAAGACGAAG
ACGAAGACGAAGAATCCGCCTCACAAACTGATGACCCGGCGGATGAAGCA
CAAGATATTTCTCAACCTGCAGGCCCGAGCACCTTCACTACCGCCAAAGA
ACAAGCCGTGTTGGACGAGGAAAGGGAGGCCCAGATGGCAAGAGAAAGGA
AGAGGAGATGCTTTCCGCATTCAGCTACTGTCCGACTGGAGAACGGCCAG
CGCATTCCTATGACTCAACTTCAAGTTGGTCATCGCGTGCTTGTCGCTCC
TGGCGTATTCTCCCCCGTCTTTATGTTCACACATAAGCTCAACAATATCG
TCAGCGACTTTGTGCGCATCCGTACCGACCGCGGCGATCAACTGTCTGTT
ACCGCCTCGCATTTCATCTACCTTGACTCTAATCTTGTACCTGCCGGCTC
CGCTAAAGTCGGACAGCAAGTTCAACTTGAAGACGGAAGCCTTTCAACTA
TATCTCACGTATCCATCGTTCAGAGCGCAGGATTGTACAACCCGCAAACC
CTTCATGGAGATATCATTGTCGACAACATTCGCTGTTCGACCTACACCGA
AGCCATCCAGCCTATAGTTGCACACTCTGTACTTGCTCCTCTTCGTCTTC
TGTTTGACACATTTGCGGTTTATACCTCACAGTTGGACAACGGCGGTGAT
GCTCTTATGAGCGCTTTTCGAGCACCGTTGTCTTTCCTTTCTAGCGTGTA
G