Gcaud9318.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9318.t1
Unique NameGcaud9318.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length144
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1448_length_10592_cov_4.938196contigNODE_1448_length_10592_cov_4.938196:297..845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3885.XP_007154080.1
PFAMsPRA1,Ribosomal_S19
Max annot lvl35493|Streptophyta
KEGG koko:K02958
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000028,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006996,GO:0008150,GO:0009987,GO:0015935,GO:0016043,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0032991,GO:0034622,GO:0042254,GO:0042255,GO:0042274,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071826,GO:0071840,GO:1990904
Evalue1.29e-66
EggNOG OGsCOG0185@1|root,KOG0898@2759|Eukaryota,37KZ9@33090|Viridiplantae,3GA7S@35493|Streptophyta,4JFBE@91835|fabids
DescriptionRIBOSOMAL protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9318Gcaud9318Gracilaria caudata M_176_S67 malegeneNODE_1448_length_10592_cov_4.938196 297..845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9318.t1Gcaud9318.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1448_length_10592_cov_4.938196 297..845 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9318.t1.start1Gcaud9318.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1448_length_10592_cov_4.938196 297..299 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9318.t1.CDS1Gcaud9318.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1448_length_10592_cov_4.938196 297..536 +
Gcaud9318.t1.CDS2Gcaud9318.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1448_length_10592_cov_4.938196 654..845 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9318.t1.exon1Gcaud9318.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1448_length_10592_cov_4.938196 297..536 +
Gcaud9318.t1.exon2Gcaud9318.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1448_length_10592_cov_4.938196 654..845 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9318.t1.intron1Gcaud9318.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1448_length_10592_cov_4.938196 537..653 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9318.t1.stop1Gcaud9318.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1448_length_10592_cov_4.938196 843..845 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9318.t1 ID=Gcaud9318.t1|Name=Gcaud9318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=144bp
MQVQPKRRTFKKFTFRGVDLDALLTMKPVELLPLLSSRARRKFNRGITRK
PMALIKKLNKAKKEAPEHEKPEVVKTHLRNMIVVPEMIGSVIGVYNGKTF
NAVEIKPEMIGTYLGEYSCTYKFVRHGRPGIGATHSSRFIPLK*
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spliced messenger RNA

>Gcaud9318.t1 ID=Gcaud9318.t1|Name=Gcaud9318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=432bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:297..845+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGTTCAACCGAAGCGCAGGACTTTTAAGAAGTTCACATTTCGCGG
AGTGGATCTCGATGCCCTGCTCACCATGAAGCCCGTCGAGCTGCTTCCCC
TGCTTTCATCGCGTGCGCGCAGAAAGTTTAACCGTGGAATTACCCGGAAA
CCCATGGCGTTGATTAAGAAGCTTAACAAGGCGAAGAAGGAAGCTCCTGA
ACACGAGAAGCCAGAAGTTGTAAAGACTCATCTCCGAAACATGATTGTTG
TTCCGGAAATGATTGGATCTGTCATTGGTGTGTACAATGGAAAGACCTTC
AACGCCGTTGAGATCAAGCCGGAAATGATCGGTACTTACCTTGGGGAGTA
CAGCTGCACCTACAAATTTGTGCGCCACGGAAGGCCAGGTATTGGTGCCA
CCCACTCTTCGCGGTTCATTCCATTGAAGTAG
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protein sequence of Gcaud9318.t1

>Gcaud9318.t1 ID=Gcaud9318.t1|Name=Gcaud9318.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=144bp
MQVQPKRRTFKKFTFRGVDLDALLTMKPVELLPLLSSRARRKFNRGITRK
PMALIKKLNKAKKEAPEHEKPEVVKTHLRNMIVVPEMIGSVIGVYNGKTF
NAVEIKPEMIGTYLGEYSCTYKFVRHGRPGIGATHSSRFIPLK*
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mRNA from alignment at NODE_1448_length_10592_cov_4.938196:297..845+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9318.t1 ID=Gcaud9318.t1|Name=Gcaud9318.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=549bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:297..845+ (Gracilaria caudata M_176_S67 male)
ATGCAGGTTCAACCGAAGCGCAGGACTTTTAAGAAGTTCACATTTCGCGG
AGTGGATCTCGATGCCCTGCTCACCATGAAGCCCGTCGAGCTGCTTCCCC
TGCTTTCATCGCGTGCGCGCAGAAAGTTTAACCGTGGAATTACCCGGAAA
CCCATGGCGTTGATTAAGAAGCTTAACAAGGCGAAGAAGGAAGCTCCTGA
ACACGAGAAGCCAGAAGTTGTAAAGACTCATCTCCGAAACGTAAGTGTGT
CCATTTCGTATAGACTCCACATGCCTCAAACGCTTTACTGACTTCTCTTC
CTCATTATTTATTTTGCACGATCCCCGCGCTGCGTTTGCCAATCTTCCTT
TGAACAGATGATTGTTGTTCCGGAAATGATTGGATCTGTCATTGGTGTGT
ACAATGGAAAGACCTTCAACGCCGTTGAGATCAAGCCGGAAATGATCGGT
ACTTACCTTGGGGAGTACAGCTGCACCTACAAATTTGTGCGCCACGGAAG
GCCAGGTATTGGTGCCACCCACTCTTCGCGGTTCATTCCATTGAAGTAG
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Coding sequence (CDS) from alignment at NODE_1448_length_10592_cov_4.938196:297..845+

>Gcaud9318.t1 ID=Gcaud9318.t1|Name=Gcaud9318.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=432bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:297..845+ (Gracilaria caudata M_176_S67 male)
ATGCAGGTTCAACCGAAGCGCAGGACTTTTAAGAAGTTCACATTTCGCGG
AGTGGATCTCGATGCCCTGCTCACCATGAAGCCCGTCGAGCTGCTTCCCC
TGCTTTCATCGCGTGCGCGCAGAAAGTTTAACCGTGGAATTACCCGGAAA
CCCATGGCGTTGATTAAGAAGCTTAACAAGGCGAAGAAGGAAGCTCCTGA
ACACGAGAAGCCAGAAGTTGTAAAGACTCATCTCCGAAACATGATTGTTG
TTCCGGAAATGATTGGATCTGTCATTGGTGTGTACAATGGAAAGACCTTC
AACGCCGTTGAGATCAAGCCGGAAATGATCGGTACTTACCTTGGGGAGTA
CAGCTGCACCTACAAATTTGTGCGCCACGGAAGGCCAGGTATTGGTGCCA
CCCACTCTTCGCGGTTCATTCCATTGAAGTAG
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