Gcaud9319.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9319.t1
Unique NameGcaud9319.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1448_length_10592_cov_4.938196contigNODE_1448_length_10592_cov_4.938196:1481..2035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog5911.EAR86307
PFAMsADP_ribosyl_GH,GGACT,SIR2,zf-UBP
Max annot lvl2759|Eukaryota
KEGG rclassRC00033,RC00096,RC00485
KEGG koko:K11121,ko:K11412,ko:K11834
KEGG ReactionR00102,R10633
KEGG Pathwayko00760,ko01100,ko04213,map00760,map01100,map04213
Evalue6.14e-19
EggNOG OGsCOG0123@1|root,KOG1343@2759|Eukaryota
EC3.4.19.12
DescriptionNAD-dependent histone deacetylase activity (H3-K14 specific)
COG categoryK
BRITEko00000,ko00001,ko01000,ko01002,ko03032,ko03036,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9319Gcaud9319Gracilaria caudata M_176_S67 malegeneNODE_1448_length_10592_cov_4.938196 1481..2035 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9319.t1.start1Gcaud9319.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1448_length_10592_cov_4.938196 1481..1483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9319.t1.CDS1Gcaud9319.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1448_length_10592_cov_4.938196 1481..2035 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9319.t1.exon1Gcaud9319.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1448_length_10592_cov_4.938196 1481..2035 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9319.t1.stop1Gcaud9319.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1448_length_10592_cov_4.938196 2033..2035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9319.t1Gcaud9319.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1448_length_10592_cov_4.938196 1481..2035 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9319.t1 ID=Gcaud9319.t1|Name=Gcaud9319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=185bp
MGIGLRDAVVTEILRFVFVRNSKMNDLDAGFSIVPSSNCPHISDSGFLVH
PDLSPDPRTAGKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQ
GHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFH
RGKFGHLPSGNLHIQVSTMPDIVLERNTQDRKSE*
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spliced messenger RNA

>Gcaud9319.t1 ID=Gcaud9319.t1|Name=Gcaud9319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:1481..2035+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCATTGGCCTTAGAGACGCAGTGGTAACTGAGATCCTTCGTTTCGT
GTTCGTCCGGAATTCAAAGATGAATGACTTAGATGCAGGTTTCTCCATTG
TTCCCTCATCGAACTGCCCACACATATCTGACTCTGGCTTTCTTGTCCAC
CCGGACCTGAGTCCCGATCCGCGAACCGCTGGAAAAGCTCGGAGACAAAA
TCGGTTCTTGAAGTATCAAACTTGCGAAACTTGTGGCGATGCGGACGAGG
GATGGGTATGCCTTGCATGCTGTTTCCCTGGATGCAGTCGCTATAAACAA
GGCCACATGGTAAAGCATGCCGAAGACGAAGATCGAGAAAACGCTCACCC
TGTCATTGCAATTAGCCTGTCCGATTTAAGCTTTTGGTGTTTCAAATGTG
ATACATACATAACACATCCTAAACTCGAGAGACCATTCCAGGAGTTCCAT
CGCGGAAAGTTTGGCCATCTACCATCTGGAAACTTGCATATTCAAGTCTC
TACCATGCCAGATATAGTGCTCGAACGTAATACTCAAGACCGAAAGTCAG
AGTGA
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protein sequence of Gcaud9319.t1

>Gcaud9319.t1 ID=Gcaud9319.t1|Name=Gcaud9319.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=185bp
MGIGLRDAVVTEILRFVFVRNSKMNDLDAGFSIVPSSNCPHISDSGFLVH
PDLSPDPRTAGKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQ
GHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFH
RGKFGHLPSGNLHIQVSTMPDIVLERNTQDRKSE*
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mRNA from alignment at NODE_1448_length_10592_cov_4.938196:1481..2035+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9319.t1 ID=Gcaud9319.t1|Name=Gcaud9319.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=555bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:1481..2035+ (Gracilaria caudata M_176_S67 male)
ATGGGCATTGGCCTTAGAGACGCAGTGGTAACTGAGATCCTTCGTTTCGT
GTTCGTCCGGAATTCAAAGATGAATGACTTAGATGCAGGTTTCTCCATTG
TTCCCTCATCGAACTGCCCACACATATCTGACTCTGGCTTTCTTGTCCAC
CCGGACCTGAGTCCCGATCCGCGAACCGCTGGAAAAGCTCGGAGACAAAA
TCGGTTCTTGAAGTATCAAACTTGCGAAACTTGTGGCGATGCGGACGAGG
GATGGGTATGCCTTGCATGCTGTTTCCCTGGATGCAGTCGCTATAAACAA
GGCCACATGGTAAAGCATGCCGAAGACGAAGATCGAGAAAACGCTCACCC
TGTCATTGCAATTAGCCTGTCCGATTTAAGCTTTTGGTGTTTCAAATGTG
ATACATACATAACACATCCTAAACTCGAGAGACCATTCCAGGAGTTCCAT
CGCGGAAAGTTTGGCCATCTACCATCTGGAAACTTGCATATTCAAGTCTC
TACCATGCCAGATATAGTGCTCGAACGTAATACTCAAGACCGAAAGTCAG
AGTGA
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Coding sequence (CDS) from alignment at NODE_1448_length_10592_cov_4.938196:1481..2035+

>Gcaud9319.t1 ID=Gcaud9319.t1|Name=Gcaud9319.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=555bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:1481..2035+ (Gracilaria caudata M_176_S67 male)
ATGGGCATTGGCCTTAGAGACGCAGTGGTAACTGAGATCCTTCGTTTCGT
GTTCGTCCGGAATTCAAAGATGAATGACTTAGATGCAGGTTTCTCCATTG
TTCCCTCATCGAACTGCCCACACATATCTGACTCTGGCTTTCTTGTCCAC
CCGGACCTGAGTCCCGATCCGCGAACCGCTGGAAAAGCTCGGAGACAAAA
TCGGTTCTTGAAGTATCAAACTTGCGAAACTTGTGGCGATGCGGACGAGG
GATGGGTATGCCTTGCATGCTGTTTCCCTGGATGCAGTCGCTATAAACAA
GGCCACATGGTAAAGCATGCCGAAGACGAAGATCGAGAAAACGCTCACCC
TGTCATTGCAATTAGCCTGTCCGATTTAAGCTTTTGGTGTTTCAAATGTG
ATACATACATAACACATCCTAAACTCGAGAGACCATTCCAGGAGTTCCAT
CGCGGAAAGTTTGGCCATCTACCATCTGGAAACTTGCATATTCAAGTCTC
TACCATGCCAGATATAGTGCTCGAACGTAATACTCAAGACCGAAAGTCAG
AGTGA
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