Gcaud9319.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9319.t1
Unique NameGcaud9319.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length185
Homology
BLAST of Gcaud9319.t1 vs. uniprot
Match: A0A2V3J0F8_9FLOR (Histone deacetylase 6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0F8_9FLOR)

HSP 1 Score: 196 bits (497), Expect = 1.710e-61
Identity = 85/123 (69.11%), Postives = 96/123 (78.05%), Query Frame = 0
Query:   53 LSPDPRTAGKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQGHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFHRGKFGHLPSGNLHIQVSTMPDIVLE 175
            + P P+ +GKA R+NR+ KY+TCE CGD DEGWVCL CCF GCSRYK+GHMV+HAED DRE  HPVIAISLSDLS WCF CD Y+THPKLE PF+EFHRGKFG  PSG LH      P  V+E
Sbjct:    1 MIPSPQASGKAPRENRYWKYKTCEACGDVDEGWVCLVCCFSGCSRYKKGHMVEHAEDTDRETEHPVIAISLSDLSVWCFLCDEYVTHPKLEEPFREFHRGKFGKYPSGRLHDVSLDDPKFVVE 123          
BLAST of Gcaud9319.t1 vs. uniprot
Match: R7QMT1_CHOCR (UBP-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMT1_CHOCR)

HSP 1 Score: 167 bits (424), Expect = 9.270e-50
Identity = 80/161 (49.69%), Postives = 100/161 (62.11%), Query Frame = 0
Query:   24 MNDLDAGFSIVPSSNCPHISDSGFLVHPDLSPDPRTA-GKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQGHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFHRGKFGHLPSGNLHIQVSTMPDIVLERNTQDRKS 183
            + D   GFS+ PS NC HI+   F + P+++     + GKA R+N +L+   C +CGD +E WVCL+C   GCSRYK GHMV HA D   ++A  VIAISL+DLS WCF CD YITHPKLE  F+EFH GKFG  P+G LH   +     VL   T    S
Sbjct:   10 LQDDGVGFSVAPSPNCLHIASPSFEIFPEIATATTNSHGKAPRRNLYLEKCACNSCGDPEESWVCLSCGVSGCSRYKAGHMVAHANDAGSDHAAAVIAISLADLSIWCFACDDYITHPKLEPIFREFHLGKFGRAPTGELHSANNEAHGAVLTMETSATNS 170          
BLAST of Gcaud9319.t1 vs. uniprot
Match: A0A8H7QCZ7_9FUNG (UBP-type domain-containing protein n=1 Tax=Mucor plumbeus TaxID=97098 RepID=A0A8H7QCZ7_9FUNG)

HSP 1 Score: 94.0 bits (232), Expect = 1.640e-21
Identity = 52/137 (37.96%), Postives = 71/137 (51.82%), Query Frame = 0
Query:   22 SKMNDLDAGFSIVPSSNCPHISDSGFLVHPDLSPDPRTAGKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQGHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFHRGKFGHLP 158
            S + DL  GF++ P +NCPHI                 A K   +   L ++ C++CG+++E W CL C    CSRY QGHM KH +D    +    + IS SDLS WC+ CD+YI H  LE   +  +  KFG  P
Sbjct:    5 SAIQDL-VGFAVEPITNCPHIP----------------AYKINEKGPDLYHKPCQSCGESNENWQCLHCKSVYCSRYCQGHMRKHVQDVPEHS----VCISYSDLSVWCYICDSYIVHKDLEPIKRVLYISKFGQEP 120          
BLAST of Gcaud9319.t1 vs. uniprot
Match: L8GKE3_ACACA (ADPribosylglycohydrolase superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GKE3_ACACA)

HSP 1 Score: 100 bits (250), Expect = 1.720e-21
Identity = 52/130 (40.00%), Postives = 66/130 (50.77%), Query Frame = 0
Query:   29 AGFSIVPSSNCPHISDSGFLVHPDLSPDPRTAGKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQGHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFHRGKFGHLP 158
            AGFS+ P  +CPH+      + PD   D   A  A      L  + C  CG A E W+CL C    CSRY  GH   H      + +H  I  S SDLSFWC++C++YIT P+L   F   H+ KFG  P
Sbjct:    7 AGFSVEPKRDCPHVKTHVHALPPDFVVDALAAIAAA-----LLQRGCADCGHAGENWLCLGCYGVFCSRYVNGHASAH-----HDQSHHAINCSFSDLSFWCYECESYITAPELWPLFSGLHQAKFGTAP 126          
BLAST of Gcaud9319.t1 vs. uniprot
Match: A0A7S4HMI3_9EUKA (Hypothetical protein n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4HMI3_9EUKA)

HSP 1 Score: 98.2 bits (243), Expect = 9.390e-21
Identity = 54/133 (40.60%), Postives = 70/133 (52.63%), Query Frame = 0
Query:   31 FSIVPSSNCPHISDSGFLVH-PDLSPDPRTAGKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQGHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFHRGKFGHLPSGNL 162
            +++ P ++CPH+ +  F     D + D   A        FLK   CE C   DE W+CL C   GCSRYK  HMV+H    + E+ H V AISLSDLS WC+ C+ YI  PK+       +  KFG LP   L
Sbjct:   11 YAVEPKADCPHVEEMSFSEKFDDFTLDAAEA--------FLK-NPCEFCDVNDENWICLDCGILGCSRYKNSHMVEH----NNESKHAV-AISLSDLSSWCYNCEAYIISPKIRPVHSMLYLAKFGELPRSAL 129          
BLAST of Gcaud9319.t1 vs. uniprot
Match: A0A077WUA1_9FUNG (UBP-type domain-containing protein n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WUA1_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 8.470e-20
Identity = 52/145 (35.86%), Postives = 75/145 (51.72%), Query Frame = 0
Query:   22 SKMNDLDAGFSIVPSSNCPHISDSGFLVHPDLSPDPRTAGKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQGHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFHRGKFGHLPSGNLHIQV 166
            ++++  D GF++ P + CPH+           SP P           FL  QTC  C +  E W CL C    CSRY+ GHMV+H E E +++A   + +S SDLS WCFKC++YI +  L+   +  +  KFG  P     I+V
Sbjct:   14 AELDRQDVGFAVEPITTCPHVP----------SPIPTHV--------FLN-QTCGACQEQHENWQCLTCNTVLCSRYRNGHMVEHFE-ETKDHA---VCLSYSDLSVWCFKCESYIANETLQEVKEMAYIAKFGEAPPNQSTIKV 135          
BLAST of Gcaud9319.t1 vs. uniprot
Match: A0A1R2B851_9CILI (UBP-type domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2B851_9CILI)

HSP 1 Score: 88.6 bits (218), Expect = 2.040e-19
Identity = 49/129 (37.98%), Postives = 68/129 (52.71%), Query Frame = 0
Query:   26 DLDAGFSIVPSSNCPHISDSGFLVHPDLSPDPRTAGKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQGHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFHRGKF 154
            DL   F++ P  +CPHI+    L +P         G+ R  N       C+ CGD  E W+C+ C    CSRY  GHM++H    ++ ++HP IA+S +DLSFWCF CD+YI   +L      F   KF
Sbjct:   10 DLGGFFAVHPRDDCPHIAS--ILENP---------GERRISN------PCQECGDLKENWICIQCGNIYCSRYVNGHMLEH----NQNSSHP-IALSFTDLSFWCFACDSYIVSNELRPLLLSFQNQKF 116          
BLAST of Gcaud9319.t1 vs. uniprot
Match: A0A7S1SJ61_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SJ61_9CHLO)

HSP 1 Score: 88.2 bits (217), Expect = 2.520e-19
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 0
Query:   75 CETCGDADEGWVCLACCFPGCSRYKQGHMVKHAED--EDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFHRGKFG 155
            CE CGD+ E WVCL      CSRY +GHM +HA++     E +  V+AISL+DLS WCF+CD+YI H ++E    E  + KFG
Sbjct:   30 CEVCGDSSENWVCLNSGRLLCSRYVKGHMKQHADELVAKDEGSSGVVAISLTDLSAWCFQCDSYIAHREVEAVLDEVRKAKFG 112          
BLAST of Gcaud9319.t1 vs. uniprot
Match: A0A1C7N113_9FUNG (UBP-type domain-containing protein n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N113_9FUNG)

HSP 1 Score: 87.8 bits (216), Expect = 3.550e-19
Identity = 47/125 (37.60%), Postives = 60/125 (48.00%), Query Frame = 0
Query:   31 FSIVPSSNCPHISDSGFLVHPDLSPDPRTAGKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQGHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFHRGKFG 155
            F++ P ++CPHI                     + + + L  + CE CGD  E W C  C    CSRY QGHM +H  D      H  + IS SDLS WCFKCDTYI H  L+      ++ KFG
Sbjct:   16 FAVEPKTDCPHIP-------------------IQYEVKELLGKPCEACGDTTENWQCFHCQGIFCSRYCQGHMKQHTSD-----THHAVCISHSDLSVWCFKCDTYIAHEDLKDMINCLYKLKFG 116          
BLAST of Gcaud9319.t1 vs. uniprot
Match: Q22MQ4_TETTS (Zn-finger in ubiquitin-hydrolase n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q22MQ4_TETTS)

HSP 1 Score: 90.1 bits (222), Expect = 1.440e-18
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 0
Query:   28 DAGFSIVPSSNCPHISDSGFLVHPDLSPDPRTAGKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQGHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFHRGKF 154
            +  F++ P +NCPH       +  DL     T  + R+Q   L +  C  C +  E W CL C    CSRY +GHM  H    +++N    +A+S SDLSFWC++CD+YIT+  L +  + F + KF
Sbjct:   17 EEAFAVEPITNCPH------ALKLDLKKTEETIYQKRQQ---LFWSQCSNCENVGENWFCLICNNVYCSRYVKGHMAMH----NQQNQDHQVAVSFSDLSFWCYECDSYITNQDLSKLRKLFQKAKF 130          
The following BLAST results are available for this feature:
BLAST of Gcaud9319.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0F8_9FLOR1.710e-6169.11Histone deacetylase 6 n=1 Tax=Gracilariopsis chord... [more]
R7QMT1_CHOCR9.270e-5049.69UBP-type domain-containing protein n=1 Tax=Chondru... [more]
A0A8H7QCZ7_9FUNG1.640e-2137.96UBP-type domain-containing protein n=1 Tax=Mucor p... [more]
L8GKE3_ACACA1.720e-2140.00ADPribosylglycohydrolase superfamily protein n=1 T... [more]
A0A7S4HMI3_9EUKA9.390e-2140.60Hypothetical protein n=2 Tax=Vannella sp. CB-2014 ... [more]
A0A077WUA1_9FUNG8.470e-2035.86UBP-type domain-containing protein n=1 Tax=Lichthe... [more]
A0A1R2B851_9CILI2.040e-1937.98UBP-type domain-containing protein n=1 Tax=Stentor... [more]
A0A7S1SJ61_9CHLO2.520e-1949.40Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A1C7N113_9FUNG3.550e-1937.60UBP-type domain-containing protein n=1 Tax=Choanep... [more]
Q22MQ4_TETTS1.440e-1836.22Zn-finger in ubiquitin-hydrolase n=1 Tax=Tetrahyme... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001607Zinc finger, UBP-typeSMARTSM00290Zf_UBP_1coord: 74..128
e-value: 2.4E-4
score: 30.4
IPR001607Zinc finger, UBP-typePFAMPF02148zf-UBPcoord: 75..141
e-value: 2.7E-15
score: 56.5
IPR001607Zinc finger, UBP-typePROSITEPS50271ZF_UBPcoord: 73..139
score: 14.406105
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 34..159
e-value: 3.2E-23
score: 83.5
NoneNo IPR availablePANTHERPTHR47665HISTONE DEACETYLASE-LIKE PROTEINcoord: 75..137
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 37..143

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1448_length_10592_cov_4.938196contigNODE_1448_length_10592_cov_4.938196:1481..2035 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9319.t1Gcaud9319.t1Gracilaria caudata M_176_S67 malemRNANODE_1448_length_10592_cov_4.938196 1481..2035 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9319.t1 ID=Gcaud9319.t1|Name=Gcaud9319.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=185bp
MGIGLRDAVVTEILRFVFVRNSKMNDLDAGFSIVPSSNCPHISDSGFLVH
PDLSPDPRTAGKARRQNRFLKYQTCETCGDADEGWVCLACCFPGCSRYKQ
GHMVKHAEDEDRENAHPVIAISLSDLSFWCFKCDTYITHPKLERPFQEFH
RGKFGHLPSGNLHIQVSTMPDIVLERNTQDRKSE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001607Znf_UBP
IPR013083Znf_RING/FYVE/PHD