Gcaud9322.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud9322.t1
Unique NameGcaud9322.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length223
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1448_length_10592_cov_4.938196contigNODE_1448_length_10592_cov_4.938196:8345..9013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704953.1
PFAMsGrpE
Max annot lvl2759|Eukaryota
KEGG koko:K03687
Evalue2.54e-45
EggNOG OGsCOG0576@1|root,KOG3003@2759|Eukaryota
Descriptionadenyl-nucleotide exchange factor activity
COG categoryO
BRITEko00000,ko03029,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9322Gcaud9322Gracilaria caudata M_176_S67 malegeneNODE_1448_length_10592_cov_4.938196 8345..9013 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9322.t1.start1Gcaud9322.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1448_length_10592_cov_4.938196 8345..8347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9322.t1.CDS1Gcaud9322.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1448_length_10592_cov_4.938196 8345..9013 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9322.t1.exon1Gcaud9322.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1448_length_10592_cov_4.938196 8345..9013 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9322.t1.stop1Gcaud9322.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1448_length_10592_cov_4.938196 9011..9013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud9322.t1Gcaud9322.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1448_length_10592_cov_4.938196 8345..9013 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud9322.t1 ID=Gcaud9322.t1|Name=Gcaud9322.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=223bp
MLRCVQRARQLYRTTYSRPSTCIATNRLFSTQDKQVNDEDPAGQQVPKQS
ENGESSAADMENLLKRLEEKEAQLIDLNDRTLRVLAEMENVRMIARRDVE
NAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLG
ATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDIT
KLGYTIGDRILRPAEVGVSREA*
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spliced messenger RNA

>Gcaud9322.t1 ID=Gcaud9322.t1|Name=Gcaud9322.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=669bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:8345..9013+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTACGCTGTGTTCAACGAGCACGACAACTCTACAGAACGACTTACTC
CCGGCCGTCAACATGCATAGCAACCAATCGTTTATTCTCTACTCAGGATA
AGCAAGTGAACGACGAAGATCCAGCAGGTCAACAAGTGCCGAAGCAATCC
GAAAATGGAGAAAGCAGTGCTGCAGATATGGAAAACCTTTTGAAGCGATT
AGAGGAGAAAGAAGCACAGCTGATTGATCTTAACGACAGAACTCTACGGG
TTCTTGCTGAAATGGAAAATGTTCGTATGATTGCGAGACGAGATGTCGAA
AACGCCAAGAAGTATGCCGTCGTGCCGTTTGCACGAGCCTTACTGAGCGT
TGCCGATAATCTTGGTCTCGCTCTCAAGTCTGTTCCCGATTCAGCTCTTA
GTGCTGAAGATAATCAATCCCATTTGAAAGGCTTGTATACAGGTCTCGGT
GCCACGGAATCTGAACTTCTGAAGGTTTTCGCCCAACATGGCATCGAAAG
ATTTGGAGAGATCGGCGATAAGTTTGACCCGAACAAGTATCAGGCCATGT
TTGAGGTACCGTCTCCTGAACATGAACCTGGAACTGTTATTGACATTACA
AAGCTCGGCTACACAATAGGTGACAGAATACTTCGTCCTGCAGAGGTTGG
AGTTTCTAGGGAAGCGTGA
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protein sequence of Gcaud9322.t1

>Gcaud9322.t1 ID=Gcaud9322.t1|Name=Gcaud9322.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=223bp
MLRCVQRARQLYRTTYSRPSTCIATNRLFSTQDKQVNDEDPAGQQVPKQS
ENGESSAADMENLLKRLEEKEAQLIDLNDRTLRVLAEMENVRMIARRDVE
NAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLG
ATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDIT
KLGYTIGDRILRPAEVGVSREA*
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mRNA from alignment at NODE_1448_length_10592_cov_4.938196:8345..9013+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud9322.t1 ID=Gcaud9322.t1|Name=Gcaud9322.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=669bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:8345..9013+ (Gracilaria caudata M_176_S67 male)
ATGTTACGCTGTGTTCAACGAGCACGACAACTCTACAGAACGACTTACTC
CCGGCCGTCAACATGCATAGCAACCAATCGTTTATTCTCTACTCAGGATA
AGCAAGTGAACGACGAAGATCCAGCAGGTCAACAAGTGCCGAAGCAATCC
GAAAATGGAGAAAGCAGTGCTGCAGATATGGAAAACCTTTTGAAGCGATT
AGAGGAGAAAGAAGCACAGCTGATTGATCTTAACGACAGAACTCTACGGG
TTCTTGCTGAAATGGAAAATGTTCGTATGATTGCGAGACGAGATGTCGAA
AACGCCAAGAAGTATGCCGTCGTGCCGTTTGCACGAGCCTTACTGAGCGT
TGCCGATAATCTTGGTCTCGCTCTCAAGTCTGTTCCCGATTCAGCTCTTA
GTGCTGAAGATAATCAATCCCATTTGAAAGGCTTGTATACAGGTCTCGGT
GCCACGGAATCTGAACTTCTGAAGGTTTTCGCCCAACATGGCATCGAAAG
ATTTGGAGAGATCGGCGATAAGTTTGACCCGAACAAGTATCAGGCCATGT
TTGAGGTACCGTCTCCTGAACATGAACCTGGAACTGTTATTGACATTACA
AAGCTCGGCTACACAATAGGTGACAGAATACTTCGTCCTGCAGAGGTTGG
AGTTTCTAGGGAAGCGTGA
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Coding sequence (CDS) from alignment at NODE_1448_length_10592_cov_4.938196:8345..9013+

>Gcaud9322.t1 ID=Gcaud9322.t1|Name=Gcaud9322.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=669bp|location=Sequence derived from alignment at NODE_1448_length_10592_cov_4.938196:8345..9013+ (Gracilaria caudata M_176_S67 male)
ATGTTACGCTGTGTTCAACGAGCACGACAACTCTACAGAACGACTTACTC
CCGGCCGTCAACATGCATAGCAACCAATCGTTTATTCTCTACTCAGGATA
AGCAAGTGAACGACGAAGATCCAGCAGGTCAACAAGTGCCGAAGCAATCC
GAAAATGGAGAAAGCAGTGCTGCAGATATGGAAAACCTTTTGAAGCGATT
AGAGGAGAAAGAAGCACAGCTGATTGATCTTAACGACAGAACTCTACGGG
TTCTTGCTGAAATGGAAAATGTTCGTATGATTGCGAGACGAGATGTCGAA
AACGCCAAGAAGTATGCCGTCGTGCCGTTTGCACGAGCCTTACTGAGCGT
TGCCGATAATCTTGGTCTCGCTCTCAAGTCTGTTCCCGATTCAGCTCTTA
GTGCTGAAGATAATCAATCCCATTTGAAAGGCTTGTATACAGGTCTCGGT
GCCACGGAATCTGAACTTCTGAAGGTTTTCGCCCAACATGGCATCGAAAG
ATTTGGAGAGATCGGCGATAAGTTTGACCCGAACAAGTATCAGGCCATGT
TTGAGGTACCGTCTCCTGAACATGAACCTGGAACTGTTATTGACATTACA
AAGCTCGGCTACACAATAGGTGACAGAATACTTCGTCCTGCAGAGGTTGG
AGTTTCTAGGGAAGCGTGA
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