Gcaud9322.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud9322.t1
Unique NameGcaud9322.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length223
Homology
BLAST of Gcaud9322.t1 vs. uniprot
Match: A0A2V3J0N7_9FLOR (Protein GrpE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0N7_9FLOR)

HSP 1 Score: 320 bits (821), Expect = 1.120e-108
Identity = 170/231 (73.59%), Postives = 191/231 (82.68%), Query Frame = 0
Query:    1 MLRCVQRARQLYRT-----TYSRPSTCIATNRLFSTQDKQVNDEDPAGQQVPKQSENGE------SSAADMENLLKRLEEKEAQLIDLNDRTLRVLAEMENVRMIARRDVENAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLGATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDITKLGYTIGDRILRPAEVGVSR 220
            MLR V  AR + R      TY RP   +A +R ++TQDKQVN++DP  +  P   ENG+      S A +M +L+K+LEEKE +L DLNDRTLRVLAEMENVRMIARRDVENA+KYAVVPFA+ALLSVADNLGLALKSVP+ AL+A D Q HLKGLYTGLGATESELLKVFAQHGIERFG +GDKFDPNKYQAMFEVPSP+HEPGTVID+TKLGYTIGDRILRPAEVGVSR
Sbjct:    1 MLRSVSAARHILRNVYCRNTYLRPPVNLAASRFYATQDKQVNEDDPEARPSPPNEENGKEQQNTISDANNMRDLIKQLEEKETELADLNDRTLRVLAEMENVRMIARRDVENARKYAVVPFAQALLSVADNLGLALKSVPEDALNAGDAQPHLKGLYTGLGATESELLKVFAQHGIERFGAVGDKFDPNKYQAMFEVPSPDHEPGTVIDVTKLGYTIGDRILRPAEVGVSR 231          
BLAST of Gcaud9322.t1 vs. uniprot
Match: R7QJT3_CHOCR (Heat Shock Protein GrpE n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJT3_CHOCR)

HSP 1 Score: 245 bits (625), Expect = 7.200e-79
Identity = 123/160 (76.88%), Postives = 143/160 (89.38%), Query Frame = 0
Query:   61 ENLLKRLEEKEAQLIDLNDRTLRVLAEMENVRMIARRDVENAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLGATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDITKLGYTIGDRILRPAEVGVSR 220
            E+L  +L+EKE +L  LNDRTLRVLAEMENVRMIARRDV+NAKKYAV+PFA+ LLSVADNLGLALK+VP+ AL    N   L+GLYTG+ ATE+ELLKVFAQHGI RFGE+GD+FDPNKYQA+FE PSP+H+PGTV+DITKLGYTIGDRILRPAEVGV++
Sbjct:   74 EHLANQLQEKEQELAALNDRTLRVLAEMENVRMIARRDVDNAKKYAVLPFAKGLLSVADNLGLALKAVPEDALHDPHNHQ-LQGLYTGVAATEAELLKVFAQHGITRFGEVGDQFDPNKYQAVFEAPSPDHQPGTVMDITKLGYTIGDRILRPAEVGVAK 232          
BLAST of Gcaud9322.t1 vs. uniprot
Match: UPI001E1D29F1 (LOW QUALITY PROTEIN: protein GrpE-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D29F1)

HSP 1 Score: 186 bits (471), Expect = 5.650e-56
Identity = 96/183 (52.46%), Postives = 130/183 (71.04%), Query Frame = 0
Query:   40 DPAGQQVPKQSENGESSAADMENLLKRLEEKEAQLIDLNDRTLRVLAEMENVRMIARRDVENAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLGATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDITKLGYTIGDRILRPAEVGVSREA 222
            +PAG   P + +  +      + +   L +K+A + +LNDR LR LAEMENVR IARRDV  A+++ +  FAR LL VADNLGLAL +VP+  L   +    L+ L+TG+ ATE+ELLKVF Q+G+E+FG IGD FDP+++QA++E PS    PG V+D+TK+GY IGDR+LRPAEVGVS+ A
Sbjct:   24 EPAG---PPEDDTRQHEGVQADRVAMELAKKDAAIAELNDRALRALAEMENVRAIARRDVAQAREFGITAFARGLLVVADNLGLALHAVPEEHL---EKDHILQALHTGVKATEAELLKVFRQNGVEQFGAIGDAFDPHRHQALYEAPSDSAAPGMVVDVTKVGYAIGDRVLRPAEVGVSKAA 200          
BLAST of Gcaud9322.t1 vs. uniprot
Match: M2XXU1_GALSU (GrpE protein homolog n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XXU1_GALSU)

HSP 1 Score: 161 bits (408), Expect = 1.850e-45
Identity = 84/173 (48.55%), Postives = 121/173 (69.94%), Query Frame = 0
Query:   48 KQSENGESSAADMENLLKRLEEKEAQLIDLNDRTLRVLAEMENVRMIARRDVENAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLGATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDITKLGYTIGDRILRPAEVGVSR 220
            +Q  + +  + D E L+++++E+E Q++ L D ++R  AEMENVR IA+RDV+NA+KY++  FA+ LL VADNL  AL+++P   L AE   + +  LY G+ AT   L KVF ++GIER+  +G+KFDPN +QAMFE+P  +   G V+ + K GY I DRILRPAEVGVS+
Sbjct:  105 QQKSSAKGISLDPEELVQQIQEQEQQIVKLKDLSMRAYAEMENVRKIAQRDVDNARKYSIGAFAKDLLDVADNLERALQNIPAEKLDAEKGDAIVISLYEGVKATNDVLQKVFQRYGIERYDPMGEKFDPNLHQAMFEIPD-KSSSGIVLAVAKTGYKIQDRILRPAEVGVSK 276          
BLAST of Gcaud9322.t1 vs. uniprot
Match: A0A0L0HN75_SPIPD (GrpE protein homolog n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HN75_SPIPD)

HSP 1 Score: 155 bits (392), Expect = 1.240e-43
Identity = 85/204 (41.67%), Postives = 125/204 (61.27%), Query Frame = 0
Query:   20 STCIATNRLFSTQD-KQVNDEDPAGQQVPKQSENGESSAADMENLLKRLEEKEAQLIDLNDRTLRVLAEMENVRMIARRDVENAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLGATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDITKLGYTIGDRILRPAEVGVSREA 222
            S  ++  R +ST+D K  N E  + +Q  + ++  ++   D   +L    EK+ Q+  L D   R LA+ ENVR  AR++V   K++A+  FA+ LLS AD L +ALK+VP++      N  HLK LYTG+  T S L+  F + GIE F  +G+ FDPN ++A+F+ P P  EPGTV D+ K GY +G RILRPA+VGV +++
Sbjct:   34 SILLSNRRQYSTEDQKTTNGEQASAKQGEQPAQEEQAPEVDTAAVLA---EKDKQIAALQDMYRRALADAENVRQRARKEVAETKEFAINKFAKELLSTADVLEMALKAVPETEHGENGNNQHLKDLYTGVAMTRSNLMATFKRFGIEPFEPLGETFDPNLHEALFQAPIPGKEPGTVFDVAKTGYKLGSRILRPAQVGVVQDS 234          
BLAST of Gcaud9322.t1 vs. uniprot
Match: A0A7S2SG30_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SG30_9STRA)

HSP 1 Score: 155 bits (393), Expect = 2.430e-43
Identity = 77/156 (49.36%), Postives = 110/156 (70.51%), Query Frame = 0
Query:   66 RLEEKEAQLIDLNDRTLRVLAEMENVRMIARRDVENAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLGATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDITKLGYTIGDRILRPAEVGVSRE 221
            R+ E EAQ+ DL D +LR LA+ EN R IARRDVENA+++AV  FA+++L V+DNL LA+ S+P   L + DN   LK L  G+  TE+ LLK F +HG+ +FGE GDKFDPN + A+F++   + EPG++  + K G+ + DR++RPA+VG  R+
Sbjct:  118 RVAELEAQVKDLKDSSLRALADAENARTIARRDVENARQFAVTKFAKSMLEVSDNLSLAIASIPSEDLESGDNDK-LKTLMEGVVMTETSLLKAFGEHGLIKFGERGDKFDPNLHDALFQLEDADLEPGSIGQVLKAGFKLNDRVVRPAQVGTVRK 272          
BLAST of Gcaud9322.t1 vs. uniprot
Match: A0A4V1IVS5_9FUNG (GrpE protein homolog n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4V1IVS5_9FUNG)

HSP 1 Score: 150 bits (380), Expect = 2.430e-42
Identity = 76/152 (50.00%), Postives = 101/152 (66.45%), Query Frame = 0
Query:   67 LEEKEAQLIDLNDRTLRVLAEMENVRMIARRDVENAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLGATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDITKLGYTIGDRILRPAEVGV 218
            L EK+ Q+ +L D+ LR LA+ ENVR   RR VE   ++A+  FA+ LL   D LG+AL+SVP + L AED    LK L+ G+  TE+ELLK   +HG+E F  +   FDPN +QAMF+ P P  EPGTV  + K G+TI +R+LRPA+VGV
Sbjct:   39 LAEKDKQIAELKDQYLRALADTENVRQQMRRQVEETSQFAIRKFAKDLLDTVDVLGMALQSVPKAKLEAEDACPTLKSLHVGVSMTEAELLKALKRHGVEPFDALNQPFDPNMHQAMFQAPVPGKEPGTVFQVEKRGFTIKERVLRPAQVGV 190          
BLAST of Gcaud9322.t1 vs. uniprot
Match: A0A7S1C3Q1_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3Q1_9STRA)

HSP 1 Score: 150 bits (378), Expect = 3.010e-42
Identity = 79/149 (53.02%), Postives = 106/149 (71.14%), Query Frame = 0
Query:   71 EAQLIDLNDRTLRVLAEMENVRMIARRDVENAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLGATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDITKLGYTIGDRILRPAEVGVS 219
            E ++ +L +  +R+LAEMENVR IARRDV+NA+ YA+  FA+ALLSV DNL  A+ SVP  A   +     L+ L+ G+  TE+ELLKVFA +GIE+FGE GD+FDP+K+ A+FE P+    PG V  + K G+T  DRILRPA+VG +
Sbjct:   29 EKEVKELQEARMRMLAEMENVRGIARRDVDNARTYAIQGFAKALLSVTDNLERAVSSVPAEA--CDGTNPVLESLFQGVKMTEAELLKVFASNGIEKFGEPGDEFDPHKHNALFETPAEGIAPGCVAAVLKKGFTFRDRILRPADVGTT 175          
BLAST of Gcaud9322.t1 vs. uniprot
Match: A0A3M1JQ30_9PROT (Protein GrpE n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M1JQ30_9PROT)

HSP 1 Score: 149 bits (376), Expect = 1.790e-41
Identity = 79/151 (52.32%), Postives = 102/151 (67.55%), Query Frame = 0
Query:   70 KEAQLIDLNDRTLRVLAEMENVRMIARRDVENAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLGATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDITKLGYTIGDRILRPAEVGVSR 220
            ++A++ DL DR LR +AEMEN+R    R+   A +YA+  FAR LL VADNL  AL+S+P    SA    S LK    G+  TE  LLKVF +HGIERF   G+KFD N ++AMFE P+ EH+ GT+I + + GYTI DR+LRPA VGV+R
Sbjct:   53 RDAEIADLKDRLLRTVAEMENLRKRTERERREATQYAITAFARDLLDVADNLRRALESIPADPASAA---SDLKPFIEGVEMTERTLLKVFEKHGIERFSPEGEKFDHNFHEAMFEAPTTEHQSGTIIQVVQPGYTIKDRLLRPARVGVAR 200          
BLAST of Gcaud9322.t1 vs. uniprot
Match: B7G710_PHATC (GrpE protein homolog (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G710_PHATC)

HSP 1 Score: 147 bits (371), Expect = 1.820e-41
Identity = 73/155 (47.10%), Postives = 106/155 (68.39%), Query Frame = 0
Query:   68 EEKEAQLIDLNDRTLRVLAEMENVRMIARRDVENAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSH-LKGLYTGLGATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDITKLGYTIGDRILRPAEVGVSRE 221
            E+ EAQ+  L D+ LR LAE EN R IA+RDVEN K YA+  FA++LL V+DNL  A+++VP+ A   +   +H L  LY G+  TE  LLK F  +G+ +FG+ G+ FDPN+++A++E   P+ EPGTV  + K G+ +  R+LRPAEVG+ ++
Sbjct:    2 EQLEAQVQQLKDQLLRSLAEQENTRSIAKRDVENGKLYAIKSFAKSLLDVSDNLTRAMEAVPEDARVDQQESNHVLHNLYEGIAMTERGLLKAFESNGLVKFGQAGEAFDPNRHEALYEYVDPDKEPGTVGQVVKDGFLLNKRVLRPAEVGIVKK 156          
The following BLAST results are available for this feature:
BLAST of Gcaud9322.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J0N7_9FLOR1.120e-10873.59Protein GrpE n=1 Tax=Gracilariopsis chorda TaxID=4... [more]
R7QJT3_CHOCR7.200e-7976.88Heat Shock Protein GrpE n=1 Tax=Chondrus crispus T... [more]
UPI001E1D29F15.650e-5652.46LOW QUALITY PROTEIN: protein GrpE-like n=1 Tax=Mer... [more]
M2XXU1_GALSU1.850e-4548.55GrpE protein homolog n=1 Tax=Galdieria sulphuraria... [more]
A0A0L0HN75_SPIPD1.240e-4341.67GrpE protein homolog n=2 Tax=Spizellomyces TaxID=4... [more]
A0A7S2SG30_9STRA2.430e-4349.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4V1IVS5_9FUNG2.430e-4250.00GrpE protein homolog n=1 Tax=Thamnocephalis sphaer... [more]
A0A7S1C3Q1_9STRA3.010e-4253.02Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A3M1JQ30_9PROT1.790e-4152.32Protein GrpE n=1 Tax=Alphaproteobacteria bacterium... [more]
B7G710_PHATC1.820e-4147.10GrpE protein homolog (Fragment) n=1 Tax=Phaeodacty... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 50..80
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..63
NoneNo IPR availablePANTHERPTHR21237:SF23GRPE PROTEIN HOMOLOG, MITOCHONDRIALcoord: 17..220
IPR000740GrpE nucleotide exchange factorPRINTSPR00773GRPEPROTEINcoord: 172..187
score: 41.99
coord: 82..98
score: 40.81
coord: 199..218
score: 45.62
coord: 110..125
score: 41.02
IPR000740GrpE nucleotide exchange factorPFAMPF01025GrpEcoord: 51..219
e-value: 2.6E-44
score: 150.8
IPR000740GrpE nucleotide exchange factorPANTHERPTHR21237GRPE PROTEINcoord: 17..220
IPR000740GrpE nucleotide exchange factorHAMAPMF_01151GrpEcoord: 39..220
score: 16.625013
IPR000740GrpE nucleotide exchange factorCDDcd00446GrpEcoord: 76..218
e-value: 5.22924E-54
score: 167.683
IPR009012GrpE nucleotide exchange factor, headGENE3D2.30.22.10Head domain of nucleotide exchange factor GrpEcoord: 164..220
e-value: 9.9E-20
score: 72.3
IPR009012GrpE nucleotide exchange factor, headSUPERFAMILY51064Head domain of nucleotide exchange factor GrpEcoord: 165..220
IPR013805GrpE nucleotide exchange factor, coiled-coilGENE3D3.90.20.20coord: 42..161
e-value: 1.9E-22
score: 81.1
IPR013805GrpE nucleotide exchange factor, coiled-coilSUPERFAMILY58014Coiled-coil domain of nucleotide exchange factor GrpEcoord: 59..164

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1448_length_10592_cov_4.938196contigNODE_1448_length_10592_cov_4.938196:8345..9013 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud9322.t1Gcaud9322.t1Gracilaria caudata M_176_S67 malemRNANODE_1448_length_10592_cov_4.938196 8345..9013 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud9322.t1 ID=Gcaud9322.t1|Name=Gcaud9322.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=223bp
MLRCVQRARQLYRTTYSRPSTCIATNRLFSTQDKQVNDEDPAGQQVPKQS
ENGESSAADMENLLKRLEEKEAQLIDLNDRTLRVLAEMENVRMIARRDVE
NAKKYAVVPFARALLSVADNLGLALKSVPDSALSAEDNQSHLKGLYTGLG
ATESELLKVFAQHGIERFGEIGDKFDPNKYQAMFEVPSPEHEPGTVIDIT
KLGYTIGDRILRPAEVGVSREA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000740GrpE
IPR009012GrpE_head
IPR013805GrpE_coiled_coil