Gcaud8083.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8083.t1
Unique NameGcaud8083.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1375_length_11068_cov_4.224287contigNODE_1375_length_11068_cov_4.224287:6613..7692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8083Gcaud8083Gracilaria caudata M_176_S67 malegeneNODE_1375_length_11068_cov_4.224287 6613..7692 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8083.t1.stop1Gcaud8083.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1375_length_11068_cov_4.224287 6613..6615 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8083.t1.CDS1Gcaud8083.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1375_length_11068_cov_4.224287 6613..7692 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8083.t1.exon1Gcaud8083.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1375_length_11068_cov_4.224287 6613..7692 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8083.t1.start1Gcaud8083.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1375_length_11068_cov_4.224287 7690..7692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8083.t1Gcaud8083.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1375_length_11068_cov_4.224287 6613..7692 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8083.t1 ID=Gcaud8083.t1|Name=Gcaud8083.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=360bp
MVSASPSPRLRRHRTSSREDSCIEPRAYHAALWPFRGPASIASSLSPSNS
SRRLPRPLAAPIINLRSSAIFALEHSFEFSELHEQPVPLSSGLSPTLRDA
LPHPTPLRTPSPPVPSDLSAASTRAVTEPHTLRDLRRVTAPLSMMDPWQY
DTLAAHCHDRNPSTKADAASANDNHSHSRRSRRISHSSESRRRKFRPKFF
ERKLNRRMRHEFSQRSAIPDRLQDAFVASSAENSQSHFQTERRSTNAASS
QSPILVTYTPFQDDSLLTAVTAEASEQFDQPLSRPRAASEPSVRRRQSTF
FAGREGVLSIWDRLWRRRRSTQHTSSATAHSTESSASRRSGKLSRLRRLD
FRLTSRSYL*
back to top

spliced messenger RNA

>Gcaud8083.t1 ID=Gcaud8083.t1|Name=Gcaud8083.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_1375_length_11068_cov_4.224287:6613..7692- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTCCGCCTCTCCCTCGCCGCGACTCCGTCGCCATCGCACCTCCTC
CCGCGAGGACTCTTGCATCGAGCCTCGCGCCTACCACGCCGCACTGTGGC
CGTTCCGCGGCCCCGCTTCCATCGCCTCCTCTCTTTCACCTTCCAACTCC
TCGCGAAGGCTTCCCCGCCCGCTCGCAGCCCCTATCATAAACCTCCGATC
GTCCGCTATATTTGCTCTCGAGCATTCATTCGAGTTTTCCGAGCTTCATG
AACAGCCCGTTCCACTCTCATCCGGTTTGAGCCCCACTTTGCGCGATGCG
CTGCCGCATCCTACTCCCCTGCGCACGCCGTCGCCCCCCGTACCTTCGGA
TCTTTCCGCGGCCTCAACTCGTGCCGTTACTGAACCGCACACTCTTCGTG
ACCTTCGTCGTGTAACCGCGCCGTTGTCGATGATGGATCCTTGGCAATAC
GATACGCTTGCTGCCCATTGTCATGACCGCAATCCTTCTACAAAGGCTGA
TGCGGCCTCCGCGAATGATAATCACTCTCATTCGCGCCGTTCTCGTCGTA
TCTCCCATTCCTCTGAATCTCGTCGTCGCAAGTTCCGTCCCAAGTTTTTT
GAACGCAAGTTGAATCGCAGGATGCGCCATGAGTTTTCCCAGCGTTCGGC
TATTCCCGATCGCTTGCAGGATGCATTTGTAGCTTCGTCTGCCGAAAACT
CACAGTCACATTTTCAAACTGAGCGTCGTTCTACAAATGCTGCCTCGTCA
CAATCTCCAATACTGGTCACGTACACGCCCTTTCAGGATGATTCGCTTCT
GACAGCAGTCACCGCAGAAGCATCTGAACAATTTGATCAACCTTTGTCAC
GTCCTCGTGCAGCTTCCGAACCCAGCGTTCGTCGTCGACAATCCACTTTC
TTTGCTGGGAGAGAAGGTGTGCTCTCAATATGGGACCGCCTTTGGAGACG
CCGACGATCAACCCAGCACACCTCTAGTGCTACAGCACATTCTACTGAGT
CATCTGCGTCCCGAAGAAGCGGCAAACTATCTCGTCTTCGAAGACTTGAC
TTCCGTCTCACGTCAAGGTCTTACTTGTAA
back to top

protein sequence of Gcaud8083.t1

>Gcaud8083.t1 ID=Gcaud8083.t1|Name=Gcaud8083.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=360bp
MVSASPSPRLRRHRTSSREDSCIEPRAYHAALWPFRGPASIASSLSPSNS
SRRLPRPLAAPIINLRSSAIFALEHSFEFSELHEQPVPLSSGLSPTLRDA
LPHPTPLRTPSPPVPSDLSAASTRAVTEPHTLRDLRRVTAPLSMMDPWQY
DTLAAHCHDRNPSTKADAASANDNHSHSRRSRRISHSSESRRRKFRPKFF
ERKLNRRMRHEFSQRSAIPDRLQDAFVASSAENSQSHFQTERRSTNAASS
QSPILVTYTPFQDDSLLTAVTAEASEQFDQPLSRPRAASEPSVRRRQSTF
FAGREGVLSIWDRLWRRRRSTQHTSSATAHSTESSASRRSGKLSRLRRLD
FRLTSRSYL*
back to top

mRNA from alignment at NODE_1375_length_11068_cov_4.224287:6613..7692-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8083.t1 ID=Gcaud8083.t1|Name=Gcaud8083.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_1375_length_11068_cov_4.224287:6613..7692- (Gracilaria caudata M_176_S67 male)
ATGGTCTCCGCCTCTCCCTCGCCGCGACTCCGTCGCCATCGCACCTCCTC
CCGCGAGGACTCTTGCATCGAGCCTCGCGCCTACCACGCCGCACTGTGGC
CGTTCCGCGGCCCCGCTTCCATCGCCTCCTCTCTTTCACCTTCCAACTCC
TCGCGAAGGCTTCCCCGCCCGCTCGCAGCCCCTATCATAAACCTCCGATC
GTCCGCTATATTTGCTCTCGAGCATTCATTCGAGTTTTCCGAGCTTCATG
AACAGCCCGTTCCACTCTCATCCGGTTTGAGCCCCACTTTGCGCGATGCG
CTGCCGCATCCTACTCCCCTGCGCACGCCGTCGCCCCCCGTACCTTCGGA
TCTTTCCGCGGCCTCAACTCGTGCCGTTACTGAACCGCACACTCTTCGTG
ACCTTCGTCGTGTAACCGCGCCGTTGTCGATGATGGATCCTTGGCAATAC
GATACGCTTGCTGCCCATTGTCATGACCGCAATCCTTCTACAAAGGCTGA
TGCGGCCTCCGCGAATGATAATCACTCTCATTCGCGCCGTTCTCGTCGTA
TCTCCCATTCCTCTGAATCTCGTCGTCGCAAGTTCCGTCCCAAGTTTTTT
GAACGCAAGTTGAATCGCAGGATGCGCCATGAGTTTTCCCAGCGTTCGGC
TATTCCCGATCGCTTGCAGGATGCATTTGTAGCTTCGTCTGCCGAAAACT
CACAGTCACATTTTCAAACTGAGCGTCGTTCTACAAATGCTGCCTCGTCA
CAATCTCCAATACTGGTCACGTACACGCCCTTTCAGGATGATTCGCTTCT
GACAGCAGTCACCGCAGAAGCATCTGAACAATTTGATCAACCTTTGTCAC
GTCCTCGTGCAGCTTCCGAACCCAGCGTTCGTCGTCGACAATCCACTTTC
TTTGCTGGGAGAGAAGGTGTGCTCTCAATATGGGACCGCCTTTGGAGACG
CCGACGATCAACCCAGCACACCTCTAGTGCTACAGCACATTCTACTGAGT
CATCTGCGTCCCGAAGAAGCGGCAAACTATCTCGTCTTCGAAGACTTGAC
TTCCGTCTCACGTCAAGGTCTTACTTGTAA
back to top

Coding sequence (CDS) from alignment at NODE_1375_length_11068_cov_4.224287:6613..7692-

>Gcaud8083.t1 ID=Gcaud8083.t1|Name=Gcaud8083.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1080bp|location=Sequence derived from alignment at NODE_1375_length_11068_cov_4.224287:6613..7692- (Gracilaria caudata M_176_S67 male)
ATGGTCTCCGCCTCTCCCTCGCCGCGACTCCGTCGCCATCGCACCTCCTC
CCGCGAGGACTCTTGCATCGAGCCTCGCGCCTACCACGCCGCACTGTGGC
CGTTCCGCGGCCCCGCTTCCATCGCCTCCTCTCTTTCACCTTCCAACTCC
TCGCGAAGGCTTCCCCGCCCGCTCGCAGCCCCTATCATAAACCTCCGATC
GTCCGCTATATTTGCTCTCGAGCATTCATTCGAGTTTTCCGAGCTTCATG
AACAGCCCGTTCCACTCTCATCCGGTTTGAGCCCCACTTTGCGCGATGCG
CTGCCGCATCCTACTCCCCTGCGCACGCCGTCGCCCCCCGTACCTTCGGA
TCTTTCCGCGGCCTCAACTCGTGCCGTTACTGAACCGCACACTCTTCGTG
ACCTTCGTCGTGTAACCGCGCCGTTGTCGATGATGGATCCTTGGCAATAC
GATACGCTTGCTGCCCATTGTCATGACCGCAATCCTTCTACAAAGGCTGA
TGCGGCCTCCGCGAATGATAATCACTCTCATTCGCGCCGTTCTCGTCGTA
TCTCCCATTCCTCTGAATCTCGTCGTCGCAAGTTCCGTCCCAAGTTTTTT
GAACGCAAGTTGAATCGCAGGATGCGCCATGAGTTTTCCCAGCGTTCGGC
TATTCCCGATCGCTTGCAGGATGCATTTGTAGCTTCGTCTGCCGAAAACT
CACAGTCACATTTTCAAACTGAGCGTCGTTCTACAAATGCTGCCTCGTCA
CAATCTCCAATACTGGTCACGTACACGCCCTTTCAGGATGATTCGCTTCT
GACAGCAGTCACCGCAGAAGCATCTGAACAATTTGATCAACCTTTGTCAC
GTCCTCGTGCAGCTTCCGAACCCAGCGTTCGTCGTCGACAATCCACTTTC
TTTGCTGGGAGAGAAGGTGTGCTCTCAATATGGGACCGCCTTTGGAGACG
CCGACGATCAACCCAGCACACCTCTAGTGCTACAGCACATTCTACTGAGT
CATCTGCGTCCCGAAGAAGCGGCAAACTATCTCGTCTTCGAAGACTTGAC
TTCCGTCTCACGTCAAGGTCTTACTTGTAA
back to top