Gcaud2710.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud2710.t1
Unique Name	Gcaud2710.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	380

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_12_length_86746_cov_4.301944	contig	NODE_12_length_86746_cov_4.301944:69494..70701 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud2710	Gcaud2710	Gracilaria caudata M_176_S67 male	gene	NODE_12_length_86746_cov_4.301944 69494..70701 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2710.t1	Gcaud2710.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_12_length_86746_cov_4.301944 69494..70701 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2710.t1.stop1	Gcaud2710.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_12_length_86746_cov_4.301944 69494..69496 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2710.t1.CDS1	Gcaud2710.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_12_length_86746_cov_4.301944 69494..69754 -
Gcaud2710.t1.CDS2	Gcaud2710.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_12_length_86746_cov_4.301944 69823..70701 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2710.t1.exon1	Gcaud2710.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_12_length_86746_cov_4.301944 69494..69754 -
Gcaud2710.t1.exon2	Gcaud2710.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_12_length_86746_cov_4.301944 69823..70701 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2710.t1.intron1	Gcaud2710.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_12_length_86746_cov_4.301944 69755..69822 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud2710.t1.start1	Gcaud2710.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_12_length_86746_cov_4.301944 70699..70701 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_12_length_86746_cov_4.301944:69494..70701-
coding sequence from alignment at NODE_12_length_86746_cov_4.301944:69494..70701-

mRNA sequence

>Gcaud2710.t1 ID=Gcaud2710.t1|Name=Gcaud2710.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=380bp
MPDPPASAQQPPPSLPYDCSAAPAAHSDSVRDPSSSQHAVLTQVVSSAAS
AAAANGFQLQAMTLASAANSSPVPDVTVLLDGIPCVIRLPMTQPPHMLMQ
PYQPFQTYQMPPYYAAPAAYFAQPSQNLFWSTVMPPGTNPSSAVATTTSP
PSSSPPAKEFVCPRCKSSFKTNSNMQKHIRTVHENCRPFKCDRCDASYGH
KNLLVEHIRTAHDRKRPFACTTCGARFGRSSNLYSHMKSHDGKREHKCET
CHVSFSLHGNMVKHIKTVHLKQRPFLCNICNSRFGLRSDLTRHTRNVHGI
IDPNANSNKRKRLSSDSAQTPIETTSAPSNSQPKQATATATASASASASA
SASVSASALTDEITAAPDSAQNDQGNANS*

spliced messenger RNA

>Gcaud2710.t1 ID=Gcaud2710.t1|Name=Gcaud2710.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:69494..70701- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCGATCCTCCCGCGTCTGCTCAGCAGCCGCCTCCATCGCTTCCGTA
CGACTGCTCTGCCGCTCCTGCCGCTCACTCGGATTCCGTGCGTGATCCTT
CTTCCAGTCAACACGCCGTGCTTACCCAAGTCGTTTCATCCGCTGCATCT
GCTGCTGCTGCGAATGGATTCCAACTACAGGCAATGACGCTGGCTTCTGC
CGCTAATTCATCGCCAGTGCCCGATGTCACAGTCCTACTCGATGGCATTC
CTTGCGTCATCCGTCTCCCGATGACGCAGCCTCCGCACATGCTAATGCAG
CCGTACCAACCGTTTCAGACATATCAGATGCCTCCCTATTACGCCGCCCC
CGCGGCGTACTTTGCGCAGCCCAGCCAAAACTTGTTCTGGTCTACTGTTA
TGCCGCCTGGCACCAACCCTTCTTCAGCCGTCGCAACTACAACCTCTCCT
CCTTCATCATCGCCGCCCGCCAAGGAGTTTGTGTGCCCTCGTTGCAAATC
GTCCTTCAAGACCAACTCCAACATGCAAAAGCATATTAGAACCGTGCACG
AGAACTGTCGCCCTTTCAAATGTGATCGATGTGATGCGAGTTACGGTCAT
AAGAACTTGTTGGTAGAACACATCCGAACGGCGCACGACCGTAAAAGACC
TTTTGCATGTACTACCTGTGGCGCACGTTTCGGACGGAGCAGTAATCTTT
ACTCCCACATGAAAAGCCACGACGGCAAGAGGGAGCACAAATGCGAAACC
TGTCACGTCTCCTTCTCACTTCACGGAAATATGGTCAAACACATCAAGAC
AGTTCATCTCAAACAACGACCGTTTCTGTGCAACATTTGCAATTCTCGCT
TCGGTTTAAGAAGTGATCTCACACGACATACTCGAAACGTGCATGGCATT
ATAGATCCAAATGCAAACTCGAACAAGAGAAAACGACTCTCATCAGATTC
GGCACAAACACCGATAGAAACAACCAGCGCTCCTTCTAACAGCCAGCCCA
AACAAGCAACCGCCACAGCGACCGCCTCGGCTTCTGCGTCTGCATCAGCT
TCGGCATCTGTGAGCGCTAGTGCTCTCACAGACGAAATAACAGCAGCACC
AGACTCAGCACAGAACGATCAAGGCAATGCTAACTCATAG

protein sequence of Gcaud2710.t1

>Gcaud2710.t1 ID=Gcaud2710.t1|Name=Gcaud2710.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=380bp
MPDPPASAQQPPPSLPYDCSAAPAAHSDSVRDPSSSQHAVLTQVVSSAAS
AAAANGFQLQAMTLASAANSSPVPDVTVLLDGIPCVIRLPMTQPPHMLMQ
PYQPFQTYQMPPYYAAPAAYFAQPSQNLFWSTVMPPGTNPSSAVATTTSP
PSSSPPAKEFVCPRCKSSFKTNSNMQKHIRTVHENCRPFKCDRCDASYGH
KNLLVEHIRTAHDRKRPFACTTCGARFGRSSNLYSHMKSHDGKREHKCET
CHVSFSLHGNMVKHIKTVHLKQRPFLCNICNSRFGLRSDLTRHTRNVHGI
IDPNANSNKRKRLSSDSAQTPIETTSAPSNSQPKQATATATASASASASA
SASVSASALTDEITAAPDSAQNDQGNANS*

mRNA from alignment at NODE_12_length_86746_cov_4.301944:69494..70701-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud2710.t1 ID=Gcaud2710.t1|Name=Gcaud2710.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1208bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:69494..70701- (Gracilaria caudata M_176_S67 male)
ATGCCCGATCCTCCCGCGTCTGCTCAGCAGCCGCCTCCATCGCTTCCGTA
CGACTGCTCTGCCGCTCCTGCCGCTCACTCGGATTCCGTGCGTGATCCTT
CTTCCAGTCAACACGCCGTGCTTACCCAAGTCGTTTCATCCGCTGCATCT
GCTGCTGCTGCGAATGGATTCCAACTACAGGCAATGACGCTGGCTTCTGC
CGCTAATTCATCGCCAGTGCCCGATGTCACAGTCCTACTCGATGGCATTC
CTTGCGTCATCCGTCTCCCGATGACGCAGCCTCCGCACATGCTAATGCAG
CCGTACCAACCGTTTCAGACATATCAGATGCCTCCCTATTACGCCGCCCC
CGCGGCGTACTTTGCGCAGCCCAGCCAAAACTTGTTCTGGTCTACTGTTA
TGCCGCCTGGCACCAACCCTTCTTCAGCCGTCGCAACTACAACCTCTCCT
CCTTCATCATCGCCGCCCGCCAAGGAGTTTGTGTGCCCTCGTTGCAAATC
GTCCTTCAAGACCAACTCCAACATGCAAAAGCATATTAGAACCGTGCACG
AGAACTGTCGCCCTTTCAAATGTGATCGATGTGATGCGAGTTACGGTCAT
AAGAACTTGTTGGTAGAACACATCCGAACGGCGCACGACCGTAAAAGACC
TTTTGCATGTACTACCTGTGGCGCACGTTTCGGACGGAGCAGTAATCTTT
ACTCCCACATGAAAAGCCACGACGGCAAGAGGGAGCACAAATGCGAAACC
TGTCACGTCTCCTTCTCACTTCACGGAAATATGGTCAAACACATCAAGAC
AGTTCATCTCAAACAACGACCGTTTCTGTGCAACATTTGCAATTCTCGCT
TCGGTTTAAGAAGTGATCTCACACGACATGTAAGTCTTGCACACCACCTC
CACCTCTCGTTGCAGCAAACAAGCAACTTTCTAACCGTTCCCCACAGACT
CGAAACGTGCATGGCATTATAGATCCAAATGCAAACTCGAACAAGAGAAA
ACGACTCTCATCAGATTCGGCACAAACACCGATAGAAACAACCAGCGCTC
CTTCTAACAGCCAGCCCAAACAAGCAACCGCCACAGCGACCGCCTCGGCT
TCTGCGTCTGCATCAGCTTCGGCATCTGTGAGCGCTAGTGCTCTCACAGA
CGAAATAACAGCAGCACCAGACTCAGCACAGAACGATCAAGGCAATGCTA
ACTCATAG

Coding sequence (CDS) from alignment at NODE_12_length_86746_cov_4.301944:69494..70701-

>Gcaud2710.t1 ID=Gcaud2710.t1|Name=Gcaud2710.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1140bp|location=Sequence derived from alignment at NODE_12_length_86746_cov_4.301944:69494..70701- (Gracilaria caudata M_176_S67 male)
ATGCCCGATCCTCCCGCGTCTGCTCAGCAGCCGCCTCCATCGCTTCCGTA
CGACTGCTCTGCCGCTCCTGCCGCTCACTCGGATTCCGTGCGTGATCCTT
CTTCCAGTCAACACGCCGTGCTTACCCAAGTCGTTTCATCCGCTGCATCT
GCTGCTGCTGCGAATGGATTCCAACTACAGGCAATGACGCTGGCTTCTGC
CGCTAATTCATCGCCAGTGCCCGATGTCACAGTCCTACTCGATGGCATTC
CTTGCGTCATCCGTCTCCCGATGACGCAGCCTCCGCACATGCTAATGCAG
CCGTACCAACCGTTTCAGACATATCAGATGCCTCCCTATTACGCCGCCCC
CGCGGCGTACTTTGCGCAGCCCAGCCAAAACTTGTTCTGGTCTACTGTTA
TGCCGCCTGGCACCAACCCTTCTTCAGCCGTCGCAACTACAACCTCTCCT
CCTTCATCATCGCCGCCCGCCAAGGAGTTTGTGTGCCCTCGTTGCAAATC
GTCCTTCAAGACCAACTCCAACATGCAAAAGCATATTAGAACCGTGCACG
AGAACTGTCGCCCTTTCAAATGTGATCGATGTGATGCGAGTTACGGTCAT
AAGAACTTGTTGGTAGAACACATCCGAACGGCGCACGACCGTAAAAGACC
TTTTGCATGTACTACCTGTGGCGCACGTTTCGGACGGAGCAGTAATCTTT
ACTCCCACATGAAAAGCCACGACGGCAAGAGGGAGCACAAATGCGAAACC
TGTCACGTCTCCTTCTCACTTCACGGAAATATGGTCAAACACATCAAGAC
AGTTCATCTCAAACAACGACCGTTTCTGTGCAACATTTGCAATTCTCGCT
TCGGTTTAAGAAGTGATCTCACACGACATACTCGAAACGTGCATGGCATT
ATAGATCCAAATGCAAACTCGAACAAGAGAAAACGACTCTCATCAGATTC
GGCACAAACACCGATAGAAACAACCAGCGCTCCTTCTAACAGCCAGCCCA
AACAAGCAACCGCCACAGCGACCGCCTCGGCTTCTGCGTCTGCATCAGCT
TCGGCATCTGTGAGCGCTAGTGCTCTCACAGACGAAATAACAGCAGCACC
AGACTCAGCACAGAACGATCAAGGCAATGCTAACTCATAG