Gcaud2710.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2710.t1
Unique NameGcaud2710.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length380
Homology
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BLAST of Gcaud2710.t1 vs. uniprot
Match: A0A2V3IPU3_9FLOR (Protein glass n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPU3_9FLOR)

HSP 1 Score: 199 bits (505), Expect = 4.170e-56
Identity = 219/287 (76.31%), Postives = 236/287 (82.23%), Query Frame = 0 
Query:   38 HAVLTQVVSSAASAAAANGFQLQAMTLASAANSSPVPDVTVLLDGIPCVIRLPMTQPPHMLMQPYQPFQ-TYQMPPYYAAPAA---YFAQPSQNLFWSTVMPPGT---NPSSAVAXXXXXXXXXXPAKEFVCPRCKSSFKTNSNMQKHIRTVHENCRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYSHMKSXXXXXXXXXXXXXXXXXXXXXXXXXXKTVHLKQRPFLXXXXXXXXXXXXXXXXXXXXXHGIIDPNANSNKRKRLSSDS 317
            H  L+Q+V +A +AAAA+GFQL+ MTLA+AANSS   DV V+LDG+   +R    Q   ML+QPYQP Q  YQM PYYAA AA   YFAQPSQNLFWSTVMP      N ++A  XXX         +EF+CPRCKSSFKTNSNMQKHIRTVH+NCRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYSHMKSXXXXXXXXXXXXXXXXXXXXXXXXXXKTVHLKQRPF XXXXXXXXXXXXXXXXXXXXXHGI+D  A SNKRKR SS S
Sbjct:   57 HGALSQIVQTAMAAAAAHGFQLRGMTLATAANSSAAMDVNVVLDGVSVPVRAAQAQATPMLVQPYQPLQPAYQMHPYYAAAAAHTAYFAQPSQNLFWSTVMPGAAVDNNVAAAXXXXXPASSAAGATREFICPRCKSSFKTNSNMQKHIRTVHDNCRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLYSHMKSXXXXXXXXXXXXXXXXXXXXXXXXXXKTVHLKQRPFXXXXXXXXXXXXXXXXXXXXXXHGIVDATATSNKRKRTSSSS 343
The following BLAST results are available for this feature:
BLAST of Gcaud2710.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IPU3_9FLOR4.170e-5676.31Protein glass n=1 Tax=Gracilariopsis chorda TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 160..183
e-value: 0.0018
score: 27.6
coord: 246..269
e-value: 0.16
score: 21.0
coord: 189..212
e-value: 0.054
score: 22.6
coord: 218..240
e-value: 0.0053
score: 26.0
coord: 275..298
e-value: 0.047
score: 22.8
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 160..183
e-value: 2.3E-5
score: 24.6
coord: 189..212
e-value: 0.0042
score: 17.5
coord: 218..240
e-value: 2.2E-4
score: 21.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 277..298
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 248..269
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 191..212
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 220..240
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 162..183
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 218..245
score: 13.775354
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 275..303
score: 11.1359
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 189..217
score: 11.988008
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 246..274
score: 11.655478
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 160..188
score: 12.611502
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 141..184
e-value: 1.2E-6
score: 30.1
coord: 185..216
e-value: 1.5E-5
score: 26.6
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 217..244
e-value: 5.1E-9
score: 37.5
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 245..322
e-value: 4.1E-12
score: 47.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 300..379
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR24404ZINC FINGER PROTEINcoord: 212..298
coord: 158..295
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 227..284
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 158..210

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_12_length_86746_cov_4.301944contigNODE_12_length_86746_cov_4.301944:69494..70701 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2710.t1Gcaud2710.t1Gracilaria caudata M_176_S67 malemRNANODE_12_length_86746_cov_4.301944 69494..70701 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2710.t1 ID=Gcaud2710.t1|Name=Gcaud2710.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=380bp
MPDPPASAQQPPPSLPYDCSAAPAAHSDSVRDPSSSQHAVLTQVVSSAAS
AAAANGFQLQAMTLASAANSSPVPDVTVLLDGIPCVIRLPMTQPPHMLMQ
PYQPFQTYQMPPYYAAPAAYFAQPSQNLFWSTVMPPGTNPSSAVATTTSP
PSSSPPAKEFVCPRCKSSFKTNSNMQKHIRTVHENCRPFKCDRCDASYGH
KNLLVEHIRTAHDRKRPFACTTCGARFGRSSNLYSHMKSHDGKREHKCET
CHVSFSLHGNMVKHIKTVHLKQRPFLCNICNSRFGLRSDLTRHTRNVHGI
IDPNANSNKRKRLSSDSAQTPIETTSAPSNSQPKQATATATASASASASA
SASVSASALTDEITAAPDSAQNDQGNANS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf