Gcaud7945.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud7945.t1
Unique Name	Gcaud7945.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	712

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1283_length_11823_cov_4.226560	contig	NODE_1283_length_11823_cov_4.226560:4789..6924 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud7945	Gcaud7945	Gracilaria caudata M_176_S67 male	gene	NODE_1283_length_11823_cov_4.226560 4789..6924 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7945.t1.stop1	Gcaud7945.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1283_length_11823_cov_4.226560 4789..4791 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7945.t1.CDS1	Gcaud7945.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1283_length_11823_cov_4.226560 4789..6924 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7945.t1.exon1	Gcaud7945.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1283_length_11823_cov_4.226560 4789..6924 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7945.t1.start1	Gcaud7945.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1283_length_11823_cov_4.226560 6922..6924 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud7945.t1	Gcaud7945.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1283_length_11823_cov_4.226560 4789..6924 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1283_length_11823_cov_4.226560:4789..6924-
coding sequence from alignment at NODE_1283_length_11823_cov_4.226560:4789..6924-

mRNA sequence

>Gcaud7945.t1 ID=Gcaud7945.t1|Name=Gcaud7945.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=712bp
MNLRKLLRKGSSEERYADLSFSNDDDSSLRRSPLYDNDTKDTVHNAALLK
PLKGFRMAKSCVGQHDSMYDRNIDEAIQPREPQKGLETKGRDRCEQYGLV
HRKRTNPHRPIVSNGDKVDVDMGIALKAMSESDNWNSAFKAKHGVEARVI
PADNLFVRAYHFIQLVFATLCQVLKNLTTLPVRLWRVGRKELSNVKENSQ
NRTSYSSSEKCNSIMNSVNERCSEKREFDLTKKVQGGSTVDHEVSKSRER
SSIKTHVDITMATEDRNIHDHELKSSEGPSGEGHSDRNRITEGGKSIERS
GSNSSSASKTMFGGIVTNVDMYGKRTKHYMPRTSSQVVHDDSYDSERKSF
KNTGDNSSEDEIADQHGGKQELPVRFDHPMKARETLSEGTSAEENDGDAW
LWHKIENSDKWMGASERNLHHGSAVKEMPSPLRLETPRHLQCGTHHTSMD
SSNEYSLFSPEPEARRNVQNETPKISVADEIDDNERHVLVDGELISPKGH
RIRYKDSNEQSQLPVRNIEQQHQRSIERRTKMPMALRMTSTNSETHVFAE
NDDPSNAQGPHLSPARGSGVSTPRRKAFIGTGIKSDVKAVTESVKRVFMR
NKPEPDTRFTSPRSAQKTLTIIADVMVKELACMVAVRRTGALKLRSEKVY
SPDARLRTSLRFRALDEFSCNVIISRARDDDFTVTTADYVNFVAGLQQRF
LNSVTGAWRYQ*

spliced messenger RNA

>Gcaud7945.t1 ID=Gcaud7945.t1|Name=Gcaud7945.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2136bp|location=Sequence derived from alignment at NODE_1283_length_11823_cov_4.226560:4789..6924- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTTAAGAAAACTATTACGGAAAGGAAGTAGTGAAGAACGGTATGC
GGACCTGAGCTTCTCTAATGATGATGATAGTTCTCTAAGAAGATCTCCCT
TATATGATAACGACACGAAAGATACTGTTCATAATGCAGCATTGCTCAAG
CCTCTAAAGGGATTTAGGATGGCAAAATCTTGTGTGGGGCAGCATGATTC
TATGTATGATCGAAACATTGACGAAGCGATTCAACCCCGAGAACCACAGA
AAGGCCTTGAGACAAAAGGCAGAGATCGCTGTGAACAATACGGTTTAGTG
CACAGAAAGAGGACCAATCCGCACCGGCCGATTGTTAGTAATGGAGATAA
GGTCGATGTCGACATGGGCATCGCTCTAAAAGCAATGTCGGAAAGTGATA
ACTGGAATAGCGCCTTCAAGGCAAAGCATGGAGTAGAAGCTCGGGTGATT
CCCGCTGATAATTTGTTCGTGAGGGCTTACCACTTCATTCAGTTGGTGTT
TGCAACGCTTTGTCAAGTGCTCAAAAACTTAACAACACTGCCTGTTCGTT
TATGGCGGGTTGGGAGAAAAGAACTTTCTAACGTGAAGGAGAATTCGCAG
AACCGAACGTCATATAGTTCAAGCGAAAAGTGCAACAGCATCATGAATTC
TGTCAATGAAAGGTGCTCAGAGAAACGAGAGTTTGACTTGACGAAGAAGG
TCCAAGGGGGAAGTACTGTCGACCATGAGGTGTCGAAATCACGTGAGAGG
AGCTCGATCAAAACCCACGTTGATATAACGATGGCTACCGAAGATAGGAA
CATCCACGATCATGAATTGAAGTCAAGCGAAGGGCCCTCGGGCGAAGGGC
ACAGTGATAGAAACAGAATTACGGAAGGTGGGAAAAGCATCGAGCGTTCA
GGGTCCAATTCTTCTTCCGCGTCAAAGACAATGTTTGGCGGAATAGTAAC
GAACGTGGACATGTATGGCAAGAGAACAAAGCACTACATGCCCAGAACAT
CCTCCCAGGTCGTCCATGATGACTCCTATGATTCCGAAAGAAAGAGTTTC
AAGAATACTGGTGATAATTCCAGCGAAGACGAGATTGCAGACCAACATGG
CGGGAAACAAGAGTTGCCCGTTCGTTTCGATCATCCGATGAAAGCTCGTG
AGACGTTAAGCGAGGGAACTTCGGCAGAGGAGAATGATGGCGATGCATGG
TTGTGGCACAAGATCGAGAATTCAGACAAATGGATGGGAGCGTCCGAAAG
AAACCTTCATCATGGAAGTGCTGTGAAAGAGATGCCATCCCCGTTACGGT
TGGAGACCCCAAGGCATCTGCAGTGCGGAACTCATCACACAAGTATGGAT
TCTTCAAACGAATATTCGCTCTTTTCGCCAGAACCAGAAGCAAGAAGAAA
TGTTCAGAACGAAACGCCTAAGATCTCCGTTGCAGATGAAATCGATGACA
ACGAACGTCATGTGTTAGTTGACGGAGAACTAATTTCGCCAAAAGGACAC
CGGATCCGGTACAAAGACTCAAACGAACAATCGCAACTTCCCGTTCGTAA
CATTGAACAGCAGCACCAAAGAAGTATAGAAAGAAGAACAAAAATGCCAA
TGGCTCTGCGAATGACTTCAACCAACTCTGAGACACACGTTTTTGCAGAA
AATGATGATCCGTCGAATGCTCAGGGTCCCCATCTGAGCCCTGCTCGTGG
CTCTGGAGTATCTACACCCAGGAGGAAAGCTTTCATTGGCACTGGTATAA
AAAGTGACGTGAAGGCTGTTACCGAATCTGTGAAACGAGTTTTTATGAGA
AACAAACCAGAACCAGACACCAGATTCACTAGTCCTCGATCTGCACAAAA
GACTCTAACTATAATCGCTGACGTTATGGTAAAGGAGTTGGCTTGTATGG
TTGCGGTGCGAAGAACTGGTGCATTAAAACTCAGAAGTGAAAAAGTTTAC
TCTCCCGACGCCAGGCTTCGAACTAGTCTACGGTTTCGAGCTTTGGATGA
GTTCTCATGCAATGTGATCATATCTCGTGCTCGCGATGATGACTTCACAG
TAACCACGGCAGATTACGTCAACTTCGTGGCTGGATTACAGCAAAGGTTT
CTCAACTCCGTGACCGGGGCTTGGCGATATCAGTAG

protein sequence of Gcaud7945.t1

>Gcaud7945.t1 ID=Gcaud7945.t1|Name=Gcaud7945.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=712bp
MNLRKLLRKGSSEERYADLSFSNDDDSSLRRSPLYDNDTKDTVHNAALLK
PLKGFRMAKSCVGQHDSMYDRNIDEAIQPREPQKGLETKGRDRCEQYGLV
HRKRTNPHRPIVSNGDKVDVDMGIALKAMSESDNWNSAFKAKHGVEARVI
PADNLFVRAYHFIQLVFATLCQVLKNLTTLPVRLWRVGRKELSNVKENSQ
NRTSYSSSEKCNSIMNSVNERCSEKREFDLTKKVQGGSTVDHEVSKSRER
SSIKTHVDITMATEDRNIHDHELKSSEGPSGEGHSDRNRITEGGKSIERS
GSNSSSASKTMFGGIVTNVDMYGKRTKHYMPRTSSQVVHDDSYDSERKSF
KNTGDNSSEDEIADQHGGKQELPVRFDHPMKARETLSEGTSAEENDGDAW
LWHKIENSDKWMGASERNLHHGSAVKEMPSPLRLETPRHLQCGTHHTSMD
SSNEYSLFSPEPEARRNVQNETPKISVADEIDDNERHVLVDGELISPKGH
RIRYKDSNEQSQLPVRNIEQQHQRSIERRTKMPMALRMTSTNSETHVFAE
NDDPSNAQGPHLSPARGSGVSTPRRKAFIGTGIKSDVKAVTESVKRVFMR
NKPEPDTRFTSPRSAQKTLTIIADVMVKELACMVAVRRTGALKLRSEKVY
SPDARLRTSLRFRALDEFSCNVIISRARDDDFTVTTADYVNFVAGLQQRF
LNSVTGAWRYQ*

mRNA from alignment at NODE_1283_length_11823_cov_4.226560:4789..6924-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud7945.t1 ID=Gcaud7945.t1|Name=Gcaud7945.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2136bp|location=Sequence derived from alignment at NODE_1283_length_11823_cov_4.226560:4789..6924- (Gracilaria caudata M_176_S67 male)
ATGAACTTAAGAAAACTATTACGGAAAGGAAGTAGTGAAGAACGGTATGC
GGACCTGAGCTTCTCTAATGATGATGATAGTTCTCTAAGAAGATCTCCCT
TATATGATAACGACACGAAAGATACTGTTCATAATGCAGCATTGCTCAAG
CCTCTAAAGGGATTTAGGATGGCAAAATCTTGTGTGGGGCAGCATGATTC
TATGTATGATCGAAACATTGACGAAGCGATTCAACCCCGAGAACCACAGA
AAGGCCTTGAGACAAAAGGCAGAGATCGCTGTGAACAATACGGTTTAGTG
CACAGAAAGAGGACCAATCCGCACCGGCCGATTGTTAGTAATGGAGATAA
GGTCGATGTCGACATGGGCATCGCTCTAAAAGCAATGTCGGAAAGTGATA
ACTGGAATAGCGCCTTCAAGGCAAAGCATGGAGTAGAAGCTCGGGTGATT
CCCGCTGATAATTTGTTCGTGAGGGCTTACCACTTCATTCAGTTGGTGTT
TGCAACGCTTTGTCAAGTGCTCAAAAACTTAACAACACTGCCTGTTCGTT
TATGGCGGGTTGGGAGAAAAGAACTTTCTAACGTGAAGGAGAATTCGCAG
AACCGAACGTCATATAGTTCAAGCGAAAAGTGCAACAGCATCATGAATTC
TGTCAATGAAAGGTGCTCAGAGAAACGAGAGTTTGACTTGACGAAGAAGG
TCCAAGGGGGAAGTACTGTCGACCATGAGGTGTCGAAATCACGTGAGAGG
AGCTCGATCAAAACCCACGTTGATATAACGATGGCTACCGAAGATAGGAA
CATCCACGATCATGAATTGAAGTCAAGCGAAGGGCCCTCGGGCGAAGGGC
ACAGTGATAGAAACAGAATTACGGAAGGTGGGAAAAGCATCGAGCGTTCA
GGGTCCAATTCTTCTTCCGCGTCAAAGACAATGTTTGGCGGAATAGTAAC
GAACGTGGACATGTATGGCAAGAGAACAAAGCACTACATGCCCAGAACAT
CCTCCCAGGTCGTCCATGATGACTCCTATGATTCCGAAAGAAAGAGTTTC
AAGAATACTGGTGATAATTCCAGCGAAGACGAGATTGCAGACCAACATGG
CGGGAAACAAGAGTTGCCCGTTCGTTTCGATCATCCGATGAAAGCTCGTG
AGACGTTAAGCGAGGGAACTTCGGCAGAGGAGAATGATGGCGATGCATGG
TTGTGGCACAAGATCGAGAATTCAGACAAATGGATGGGAGCGTCCGAAAG
AAACCTTCATCATGGAAGTGCTGTGAAAGAGATGCCATCCCCGTTACGGT
TGGAGACCCCAAGGCATCTGCAGTGCGGAACTCATCACACAAGTATGGAT
TCTTCAAACGAATATTCGCTCTTTTCGCCAGAACCAGAAGCAAGAAGAAA
TGTTCAGAACGAAACGCCTAAGATCTCCGTTGCAGATGAAATCGATGACA
ACGAACGTCATGTGTTAGTTGACGGAGAACTAATTTCGCCAAAAGGACAC
CGGATCCGGTACAAAGACTCAAACGAACAATCGCAACTTCCCGTTCGTAA
CATTGAACAGCAGCACCAAAGAAGTATAGAAAGAAGAACAAAAATGCCAA
TGGCTCTGCGAATGACTTCAACCAACTCTGAGACACACGTTTTTGCAGAA
AATGATGATCCGTCGAATGCTCAGGGTCCCCATCTGAGCCCTGCTCGTGG
CTCTGGAGTATCTACACCCAGGAGGAAAGCTTTCATTGGCACTGGTATAA
AAAGTGACGTGAAGGCTGTTACCGAATCTGTGAAACGAGTTTTTATGAGA
AACAAACCAGAACCAGACACCAGATTCACTAGTCCTCGATCTGCACAAAA
GACTCTAACTATAATCGCTGACGTTATGGTAAAGGAGTTGGCTTGTATGG
TTGCGGTGCGAAGAACTGGTGCATTAAAACTCAGAAGTGAAAAAGTTTAC
TCTCCCGACGCCAGGCTTCGAACTAGTCTACGGTTTCGAGCTTTGGATGA
GTTCTCATGCAATGTGATCATATCTCGTGCTCGCGATGATGACTTCACAG
TAACCACGGCAGATTACGTCAACTTCGTGGCTGGATTACAGCAAAGGTTT
CTCAACTCCGTGACCGGGGCTTGGCGATATCAGTAG

Coding sequence (CDS) from alignment at NODE_1283_length_11823_cov_4.226560:4789..6924-

>Gcaud7945.t1 ID=Gcaud7945.t1|Name=Gcaud7945.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2136bp|location=Sequence derived from alignment at NODE_1283_length_11823_cov_4.226560:4789..6924- (Gracilaria caudata M_176_S67 male)
ATGAACTTAAGAAAACTATTACGGAAAGGAAGTAGTGAAGAACGGTATGC
GGACCTGAGCTTCTCTAATGATGATGATAGTTCTCTAAGAAGATCTCCCT
TATATGATAACGACACGAAAGATACTGTTCATAATGCAGCATTGCTCAAG
CCTCTAAAGGGATTTAGGATGGCAAAATCTTGTGTGGGGCAGCATGATTC
TATGTATGATCGAAACATTGACGAAGCGATTCAACCCCGAGAACCACAGA
AAGGCCTTGAGACAAAAGGCAGAGATCGCTGTGAACAATACGGTTTAGTG
CACAGAAAGAGGACCAATCCGCACCGGCCGATTGTTAGTAATGGAGATAA
GGTCGATGTCGACATGGGCATCGCTCTAAAAGCAATGTCGGAAAGTGATA
ACTGGAATAGCGCCTTCAAGGCAAAGCATGGAGTAGAAGCTCGGGTGATT
CCCGCTGATAATTTGTTCGTGAGGGCTTACCACTTCATTCAGTTGGTGTT
TGCAACGCTTTGTCAAGTGCTCAAAAACTTAACAACACTGCCTGTTCGTT
TATGGCGGGTTGGGAGAAAAGAACTTTCTAACGTGAAGGAGAATTCGCAG
AACCGAACGTCATATAGTTCAAGCGAAAAGTGCAACAGCATCATGAATTC
TGTCAATGAAAGGTGCTCAGAGAAACGAGAGTTTGACTTGACGAAGAAGG
TCCAAGGGGGAAGTACTGTCGACCATGAGGTGTCGAAATCACGTGAGAGG
AGCTCGATCAAAACCCACGTTGATATAACGATGGCTACCGAAGATAGGAA
CATCCACGATCATGAATTGAAGTCAAGCGAAGGGCCCTCGGGCGAAGGGC
ACAGTGATAGAAACAGAATTACGGAAGGTGGGAAAAGCATCGAGCGTTCA
GGGTCCAATTCTTCTTCCGCGTCAAAGACAATGTTTGGCGGAATAGTAAC
GAACGTGGACATGTATGGCAAGAGAACAAAGCACTACATGCCCAGAACAT
CCTCCCAGGTCGTCCATGATGACTCCTATGATTCCGAAAGAAAGAGTTTC
AAGAATACTGGTGATAATTCCAGCGAAGACGAGATTGCAGACCAACATGG
CGGGAAACAAGAGTTGCCCGTTCGTTTCGATCATCCGATGAAAGCTCGTG
AGACGTTAAGCGAGGGAACTTCGGCAGAGGAGAATGATGGCGATGCATGG
TTGTGGCACAAGATCGAGAATTCAGACAAATGGATGGGAGCGTCCGAAAG
AAACCTTCATCATGGAAGTGCTGTGAAAGAGATGCCATCCCCGTTACGGT
TGGAGACCCCAAGGCATCTGCAGTGCGGAACTCATCACACAAGTATGGAT
TCTTCAAACGAATATTCGCTCTTTTCGCCAGAACCAGAAGCAAGAAGAAA
TGTTCAGAACGAAACGCCTAAGATCTCCGTTGCAGATGAAATCGATGACA
ACGAACGTCATGTGTTAGTTGACGGAGAACTAATTTCGCCAAAAGGACAC
CGGATCCGGTACAAAGACTCAAACGAACAATCGCAACTTCCCGTTCGTAA
CATTGAACAGCAGCACCAAAGAAGTATAGAAAGAAGAACAAAAATGCCAA
TGGCTCTGCGAATGACTTCAACCAACTCTGAGACACACGTTTTTGCAGAA
AATGATGATCCGTCGAATGCTCAGGGTCCCCATCTGAGCCCTGCTCGTGG
CTCTGGAGTATCTACACCCAGGAGGAAAGCTTTCATTGGCACTGGTATAA
AAAGTGACGTGAAGGCTGTTACCGAATCTGTGAAACGAGTTTTTATGAGA
AACAAACCAGAACCAGACACCAGATTCACTAGTCCTCGATCTGCACAAAA
GACTCTAACTATAATCGCTGACGTTATGGTAAAGGAGTTGGCTTGTATGG
TTGCGGTGCGAAGAACTGGTGCATTAAAACTCAGAAGTGAAAAAGTTTAC
TCTCCCGACGCCAGGCTTCGAACTAGTCTACGGTTTCGAGCTTTGGATGA
GTTCTCATGCAATGTGATCATATCTCGTGCTCGCGATGATGACTTCACAG
TAACCACGGCAGATTACGTCAACTTCGTGGCTGGATTACAGCAAAGGTTT
CTCAACTCCGTGACCGGGGCTTGGCGATATCAGTAG