Gcaud2792.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2792.t1
Unique NameGcaud2792.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length143
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_127_length_46135_cov_4.421901contigNODE_127_length_46135_cov_4.421901:12650..13299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMI118CT
Preferred nameNDUFA13
PFAMsGRIM-19
Max annot lvl2759|Eukaryota
KEGG koko:K11353,ko:K14009
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04141,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,ko05165,map00190,map01100,map04141,map04714,map04723,map04932,map05010,map05012,map05016,map05165
KEGG ModuleM00146
GOsGO:0000003,GO:0000166,GO:0001101,GO:0001558,GO:0003006,GO:0003674,GO:0003824,GO:0003954,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006355,GO:0006605,GO:0006626,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007007,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008104,GO:0008137,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009790,GO:0009791,GO:0009793,GO:0009853,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010154,GO:0010257,GO:0010468,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017038,GO:0017076,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0022414,GO:0022607,GO:0022900,GO:0022904,GO:0023051,GO:0023052,GO:0023057,GO:0030162,GO:0030308,GO:0030554,GO:0030964,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032526,GO:0032553,GO:0032555,GO:0032559,GO:0032981,GO:0032991,GO:0033036,GO:0033108,GO:0033365,GO:0033993,GO:0034097,GO:0034613,GO:0034622,GO:0034641,GO:0035456,GO:0035458,GO:0035639,GO:0036094,GO:0040008,GO:0042176,GO:0042221,GO:0042773,GO:0042775,GO:0042886,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043280,GO:0043281,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045039,GO:0045184,GO:0045271,GO:0045333,GO:0045732,GO:0045862,GO:0045892,GO:0045926,GO:0045934,GO:0046034,GO:0046483,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048731,GO:0048856,GO:0050136,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0052547,GO:0052548,GO:0055085,GO:0055086,GO:0055114,GO:0060255,GO:0060548,GO:0061024,GO:0061458,GO:0065002,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070469,GO:0070585,GO:0070727,GO:0070887,GO:0071229,GO:0071300,GO:0071310,GO:0071345,GO:0071396,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0072521,GO:0072593,GO:0072594,GO:0072655,GO:0072657,GO:0080090,GO:0090150,GO:0090151,GO:0097159,GO:0097190,GO:0097191,GO:0097367,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:1990204,GO:1990542,GO:2000112,GO:2000113,GO:2000116,GO:2001056,GO:2001141,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Evalue1.4e-35
EggNOG OGsKOG3300@1|root,KOG3300@2759|Eukaryota
Descriptioncellular response to interferon-beta
COG categoryJ
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2792Gcaud2792Gracilaria caudata M_176_S67 malegeneNODE_127_length_46135_cov_4.421901 12650..13299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2792.t1Gcaud2792.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_127_length_46135_cov_4.421901 12650..13299 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2792.t1.start1Gcaud2792.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_127_length_46135_cov_4.421901 12650..12652 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2792.t1.CDS1Gcaud2792.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_127_length_46135_cov_4.421901 12650..12861 +
Gcaud2792.t1.CDS2Gcaud2792.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_127_length_46135_cov_4.421901 12962..13046 +
Gcaud2792.t1.CDS3Gcaud2792.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_127_length_46135_cov_4.421901 13168..13299 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2792.t1.exon1Gcaud2792.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_127_length_46135_cov_4.421901 12650..12861 +
Gcaud2792.t1.exon2Gcaud2792.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_127_length_46135_cov_4.421901 12962..13046 +
Gcaud2792.t1.exon3Gcaud2792.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_127_length_46135_cov_4.421901 13168..13299 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2792.t1.intron1Gcaud2792.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_127_length_46135_cov_4.421901 12862..12961 +
Gcaud2792.t1.intron2Gcaud2792.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_127_length_46135_cov_4.421901 13047..13167 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2792.t1.stop1Gcaud2792.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_127_length_46135_cov_4.421901 13297..13299 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2792.t1 ID=Gcaud2792.t1|Name=Gcaud2792.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=143bp
MAQTTGLTGPPQPPPRTVRQEVAPKGGYARINVARNVPKTIGTGAGPLLL
GTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKR
EEYNNWEASIMQDVPDWKVGENVYQTRKFMPPVGGEPPFTHN*
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spliced messenger RNA

>Gcaud2792.t1 ID=Gcaud2792.t1|Name=Gcaud2792.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=429bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:12650..13299+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAAACCACCGGTCTGACTGGACCTCCCCAGCCACCTCCACGGAC
TGTGCGACAAGAGGTTGCTCCAAAGGGGGGATATGCTCGCATTAACGTTG
CGCGAAATGTTCCGAAGACCATTGGAACCGGAGCCGGTCCGCTGTTGTTG
GGTACTGCGTTCATAATGGGCTATGGAATGTATCGCCTCGGGTCCTTCAA
CGTAAAAAGAAGGGAGTTGCGACTAGAGAAAAAGAACATCCGATTAGCCA
TCATTCCATTTCTTCAAGCTGAAGAAGATGCTCGTTTTGTAGCAAAGAGA
GAGGAATACAACAACTGGGAGGCTTCTATTATGCAAGATGTTCCAGACTG
GAAGGTTGGTGAAAATGTATATCAAACTAGAAAGTTCATGCCGCCGGTTG
GAGGAGAGCCTCCGTTTACTCACAACTAA
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protein sequence of Gcaud2792.t1

>Gcaud2792.t1 ID=Gcaud2792.t1|Name=Gcaud2792.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=143bp
MAQTTGLTGPPQPPPRTVRQEVAPKGGYARINVARNVPKTIGTGAGPLLL
GTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKR
EEYNNWEASIMQDVPDWKVGENVYQTRKFMPPVGGEPPFTHN*
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mRNA from alignment at NODE_127_length_46135_cov_4.421901:12650..13299+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2792.t1 ID=Gcaud2792.t1|Name=Gcaud2792.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=650bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:12650..13299+ (Gracilaria caudata M_176_S67 male)
ATGGCGCAAACCACCGGTCTGACTGGACCTCCCCAGCCACCTCCACGGAC
TGTGCGACAAGAGGTTGCTCCAAAGGGGGGATATGCTCGCATTAACGTTG
CGCGAAATGTTCCGAAGACCATTGGAACCGGAGCCGGTCCGCTGTTGTTG
GGTACTGCGTTCATAATGGGCTATGGAATGTATCGCCTCGGGTCCTTCAA
CGTAAAAAGAAGGTGCGTGCTTCTACGTCGGTTTGAAAATTGTAGACCAA
AACGCGCTTTCGTACTCACCGCAAGGCCCCGGGTTTTATTCGCAATGCTT
TTTTGTTTTTAGGGAGTTGCGACTAGAGAAAAAGAACATCCGATTAGCCA
TCATTCCATTTCTTCAAGCTGAAGAAGATGCTCGTTTTGTAGCAAAGGTA
TGTTCCACAGTAGTTACCATTTTCCTTGCGTTGTTACTACCGAGGTTGAT
ATGCTTTTTGCAAATATCTAACAACCAGTCTGACTGTTATATTGCTTGCA
AACGATATTAAACGACAGAGAGAGGAATACAACAACTGGGAGGCTTCTAT
TATGCAAGATGTTCCAGACTGGAAGGTTGGTGAAAATGTATATCAAACTA
GAAAGTTCATGCCGCCGGTTGGAGGAGAGCCTCCGTTTACTCACAACTAA
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Coding sequence (CDS) from alignment at NODE_127_length_46135_cov_4.421901:12650..13299+

>Gcaud2792.t1 ID=Gcaud2792.t1|Name=Gcaud2792.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=429bp|location=Sequence derived from alignment at NODE_127_length_46135_cov_4.421901:12650..13299+ (Gracilaria caudata M_176_S67 male)
ATGGCGCAAACCACCGGTCTGACTGGACCTCCCCAGCCACCTCCACGGAC
TGTGCGACAAGAGGTTGCTCCAAAGGGGGGATATGCTCGCATTAACGTTG
CGCGAAATGTTCCGAAGACCATTGGAACCGGAGCCGGTCCGCTGTTGTTG
GGTACTGCGTTCATAATGGGCTATGGAATGTATCGCCTCGGGTCCTTCAA
CGTAAAAAGAAGGGAGTTGCGACTAGAGAAAAAGAACATCCGATTAGCCA
TCATTCCATTTCTTCAAGCTGAAGAAGATGCTCGTTTTGTAGCAAAGAGA
GAGGAATACAACAACTGGGAGGCTTCTATTATGCAAGATGTTCCAGACTG
GAAGGTTGGTGAAAATGTATATCAAACTAGAAAGTTCATGCCGCCGGTTG
GAGGAGAGCCTCCGTTTACTCACAACTAA
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