Gcaud2792.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud2792.t1
Unique NameGcaud2792.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length143
Homology
BLAST of Gcaud2792.t1 vs. uniprot
Match: R7Q468_CHOCR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q468_CHOCR)

HSP 1 Score: 204 bits (520), Expect = 1.470e-65
Identity = 97/142 (68.31%), Postives = 117/142 (82.39%), Query Frame = 0
Query:    1 MAQTTGLTGPPQPPPRTVRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKREEYNNWEASIMQDVPDWKVGENVYQTRKFMPPVGGEPPFTHN 142
            M+ TTGLTGPPQPPP+TVRQEVAPKGGYA INVARNVPK+IG  AG LL+GTA +M YG Y++G+FNVKRR LR EKK +R AI P LQAEED RFVA+R+EY+ WEA +M+DVP W+VG+NVY+TR F+PP     P+ H+
Sbjct:    1 MSATTGLTGPPQPPPKTVRQEVAPKGGYAPINVARNVPKSIGGSAGLLLVGTAAMMSYGFYKVGTFNVKRRMLRQEKKEVRFAITPLLQAEEDVRFVAQRKEYHEWEADVMKDVPGWEVGKNVYKTRNFVPPTPVLAPYKHD 142          
BLAST of Gcaud2792.t1 vs. uniprot
Match: A0A7J7IHL6_9RHOD (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IHL6_9RHOD)

HSP 1 Score: 130 bits (326), Expect = 4.780e-36
Identity = 62/127 (48.82%), Postives = 86/127 (67.72%), Query Frame = 0
Query:    6 GLTGPPQPPPRTVRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKREEYNNWEASIMQDVPDWKV-GENVYQTRKFMP 131
            GLT PP+PPP    Q+  P GGY R++V RN+P+ +G  A  L LG A +M YG +R+G+FNV RREL  E++ +R A++PFLQAEED R++  R  +  WE+ +M+ VPDWK   E +Y+TR   P
Sbjct:   12 GLTEPPKPPPLHYVQDGPPAGGYPRLDVRRNLPRNVGPSATFLFLGGAVVMAYGFWRVGTFNVHRRELLEERQQVRAALVPFLQAEEDQRYLEARARWEAWESKVMEHVPDWKEKNEPIYKTRSHGP 138          
BLAST of Gcaud2792.t1 vs. uniprot
Match: M1UR10_CYAM1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=cellular organisms TaxID=131567 RepID=M1UR10_CYAM1)

HSP 1 Score: 129 bits (323), Expect = 1.400e-35
Identity = 59/128 (46.09%), Postives = 88/128 (68.75%), Query Frame = 0
Query:    5 TGLTGPPQPPPRTVRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKREEYNNWEASIMQDVPDW-KVGENVYQTRKFMP 131
            +G+T PP+PPP    Q+  P GGY R++V RN+P+ +G  A  L LG+A +M YG +R+G++N+ RREL  E++ +R A+ PFLQAEED R++  + ++  WEA +M+ VPDW K  E +Y+TR   P
Sbjct:   11 SGVTEPPKPPPLQHLQDGPPPGGYPRLDVRRNLPRNVGPSATALFLGSALVMAYGFWRMGNYNLHRRELLEERRQVRAALAPFLQAEEDERYLKAKAQWEAWEAKVMEHVPDWEKKREPIYKTRSHGP 138          
BLAST of Gcaud2792.t1 vs. uniprot
Match: A0A7S0T7Z8_9RHOD (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T7Z8_9RHOD)

HSP 1 Score: 119 bits (298), Expect = 7.010e-32
Identity = 57/126 (45.24%), Postives = 87/126 (69.05%), Query Frame = 0
Query:    6 GLTGPPQPPPRTVRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKREEYNNWEASIMQDVPDWKVGENVYQTRKFMP 131
            G+TG PQPPPR VRQ++APKGGY  I+V RNVPK++G  A  LL+G   +  +G++ + + +V+ R  + E++ +R  ++P+LQAEED     K + +   EA +M+D P W+VG++VY TR +MP
Sbjct:    3 GMTGAPQPPPREVRQDMAPKGGYKPIDVRRNVPKSVGRNAWALLIGVGSMSMWGLFDVKNRSVQIRGFKEEQRRVRECVMPYLQAEEDMIQAKKFQNFYELEAELMKDRPGWEVGKSVYYTRDWMP 128          
BLAST of Gcaud2792.t1 vs. uniprot
Match: M2XA08_GALSU (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XA08_GALSU)

HSP 1 Score: 116 bits (290), Expect = 1.660e-30
Identity = 62/130 (47.69%), Postives = 80/130 (61.54%), Query Frame = 0
Query:    4 TTGLTGPPQPPPRTVRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKREEYNNWEASIMQDVPDWKVGENVYQTRKFMPPV 133
            T+GLTGPP+PPP    Q+  P GGY  I+V RN+PK +G     LL+G   I  YG + L     +RR L  EK  +RLAI PFLQAEED + V +       E  +M+DVP ++ GENVY+TRK+ P V
Sbjct:    9 TSGLTGPPKPPPHAAIQDGPPPGGYPPIDVRRNLPK-VGPSGSTLLIGVGLITIYGFWGLSRSAQRRRRLNQEKYQVRLAITPFLQAEEDRQTVKQNRRRLRQEEELMKDVPGYQPGENVYKTRKYAPYV 137          
BLAST of Gcaud2792.t1 vs. uniprot
Match: A0A5J4YLF4_PORPP (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLF4_PORPP)

HSP 1 Score: 110 bits (276), Expect = 1.630e-28
Identity = 61/127 (48.03%), Postives = 82/127 (64.57%), Query Frame = 0
Query:    9 GPPQPPPRTVRQEVAPKGGYARINVARNVPKTIGTGAGPLLLG--TAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKREEYNNWEASIMQDVPDWKVGENVYQTRKFMPPV 133
            G P+PPPR VRQ++ PKGGYA I+V RNVPK++      LLLG   A + G G+  +   N  RR+L+ E+  IR  I PFLQ+E D  FV + EE+   EA IM++ P W+VG+NVY T+ F+ P 
Sbjct:    7 GVPRPPPREVRQDMPPKGGYAPIDVRRNVPKSVSPMMAWLLLGGGAAVVFG-GLINVAHTNQWRRKLKKERMAIRENITPFLQSESDVEFVVQSEEFLRKEAEIMKNRPKWQVGKNVYYTKDFVSPT 132          
BLAST of Gcaud2792.t1 vs. uniprot
Match: A0A514Y9Y4_POLCS (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=12 Tax=Mesangiospermae TaxID=1437183 RepID=A0A514Y9Y4_POLCS)

HSP 1 Score: 105 bits (262), Expect = 2.310e-26
Identity = 57/117 (48.72%), Postives = 75/117 (64.10%), Query Frame = 0
Query:   20 QEVAPKGGYARINVARNVPKTIGTGAGPLLLGTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKREEYNNWEASIMQDVPDWKVGENVYQTRKFMPPVGGE 136
            Q+  P GG+A +  AR +P T G  A  + L T     +GMY++G  N KRR L+ EK   R AI+PFLQAEED RFV + ++Y   EA IM+DVP WKV E+VY + ++MPP  GE
Sbjct:   22 QDGPPPGGFAPVRYARRIP-TSGPSAMAIFLATFGAFSWGMYQVGVGNKKRRALKEEKYAARRAILPFLQAEEDERFVKEWKKYLEEEARIMKDVPGWKVDESVYHSGRWMPPATGE 137          
BLAST of Gcaud2792.t1 vs. uniprot
Match: A0A6P6XGW2_COFAR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=4 Tax=Coffea TaxID=13442 RepID=A0A6P6XGW2_COFAR)

HSP 1 Score: 105 bits (261), Expect = 3.280e-26
Identity = 56/117 (47.86%), Postives = 74/117 (63.25%), Query Frame = 0
Query:   20 QEVAPKGGYARINVARNVPKTIGTGAGPLLLGTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKREEYNNWEASIMQDVPDWKVGENVYQTRKFMPPVGGE 136
            Q+  P GG+A +  AR +P + G  A  + L    +  YGMY++G  N  RR L+ EK   R AI+P LQAEED RFV + ++Y   EA IM+DVP WKVGENVY + ++MPP  GE
Sbjct:   22 QDGPPPGGFAPVRYARRIPNS-GPSAMAIFLTAFGVYSYGMYQVGKGNKIRRALKEEKYAARSAILPLLQAEEDERFVEEWKKYLEEEARIMKDVPGWKVGENVYNSGRWMPPATGE 137          
BLAST of Gcaud2792.t1 vs. uniprot
Match: A9S1D8_PHYPA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A9S1D8_PHYPA)

HSP 1 Score: 104 bits (260), Expect = 4.510e-26
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 0
Query:   18 VRQEVAPKGGYARINVARNVPKTIGTGAGPLLLGTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKREEYNNWEASIMQDVPDWKVGENVYQTRKFMPPVGGE 136
            V Q+  P GG+  +  AR +  T  +G   LL+ +A I+G+GMY++G  N+ RR L+ EK   R AI+P +QAEEDARFV ++ +    EA +M +VP WKVGENVY + ++MPP  G+
Sbjct:   20 VLQDGPPPGGFPAVRYARRIANTGPSGVTVLLVSSA-IIGWGMYQVGQGNIYRRGLKAEKIAARQAILPLIQAEEDARFVREKNKLLEEEAKVMANVPGWKVGENVYNSGRWMPPSSGK 137          
BLAST of Gcaud2792.t1 vs. uniprot
Match: Q8VXK6_GOSHI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 n=28 Tax=rosids TaxID=71275 RepID=Q8VXK6_GOSHI)

HSP 1 Score: 104 bits (260), Expect = 5.330e-26
Identity = 54/117 (46.15%), Postives = 72/117 (61.54%), Query Frame = 0
Query:   20 QEVAPKGGYARINVARNVPKTIGTGAGPLLLGTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKREEYNNWEASIMQDVPDWKVGENVYQTRKFMPPVGGE 136
            Q+  P GG+A +  AR +P   G  A  + L       YGMY++G  N  RR L+ EK   R A++P LQAEED RFV +  +Y  +EA +M+DVP WKVGENVY + ++MPP  GE
Sbjct:   22 QDGPPPGGFAPVRYARRIPNK-GPSAMAIFLAAFGAFSYGMYQIGQGNKIRRALKEEKFAARRAVLPVLQAEEDERFVKEWRKYLEYEAEVMKDVPGWKVGENVYNSGRWMPPATGE 137          
The following BLAST results are available for this feature:
BLAST of Gcaud2792.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7Q468_CHOCR1.470e-6568.31NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7J7IHL6_9RHOD4.780e-3648.82NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
M1UR10_CYAM11.400e-3546.09NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A7S0T7Z8_9RHOD7.010e-3245.24NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
M2XA08_GALSU1.660e-3047.69NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A5J4YLF4_PORPP1.630e-2848.03NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A514Y9Y4_POLCS2.310e-2648.72NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A6P6XGW2_COFAR3.280e-2647.86NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A9S1D8_PHYPA4.510e-2645.38NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
Q8VXK6_GOSHI5.330e-2646.15NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009346GRIM-19PFAMPF06212GRIM-19coord: 18..133
e-value: 2.5E-32
score: 111.6
IPR009346GRIM-19PANTHERPTHR12966NADH DEHYDROGENASE UBIQUINONE 1 ALPHA SUBCOMPLEX SUBUNIT 13coord: 17..136
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..40
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 41..61
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 62..142
NoneNo IPR availableTMHMMTMhelixcoord: 44..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_127_length_46135_cov_4.421901contigNODE_127_length_46135_cov_4.421901:12650..13299 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2792.t1Gcaud2792.t1Gracilaria caudata M_176_S67 malemRNANODE_127_length_46135_cov_4.421901 12650..13299 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud2792.t1 ID=Gcaud2792.t1|Name=Gcaud2792.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=143bp
MAQTTGLTGPPQPPPRTVRQEVAPKGGYARINVARNVPKTIGTGAGPLLL
GTAFIMGYGMYRLGSFNVKRRELRLEKKNIRLAIIPFLQAEEDARFVAKR
EEYNNWEASIMQDVPDWKVGENVYQTRKFMPPVGGEPPFTHN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009346GRIM-19