Gcaud9349.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud9349.t1
Unique Name	Gcaud9349.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	293

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1027_length_14887_cov_3.970330	contig	NODE_1027_length_14887_cov_3.970330:7237..8115 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004988666.1
Max annot lvl	2759\|Eukaryota
Evalue	8.49e-06
EggNOG OGs	2CZZG@1\|root,2SC84@2759\|Eukaryota

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud9349	Gcaud9349	Gracilaria caudata M_176_S67 male	gene	NODE_1027_length_14887_cov_3.970330 7237..8115 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9349.t1.start1	Gcaud9349.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1027_length_14887_cov_3.970330 7237..7239 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9349.t1.CDS1	Gcaud9349.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1027_length_14887_cov_3.970330 7237..8115 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9349.t1.exon1	Gcaud9349.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1027_length_14887_cov_3.970330 7237..8115 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9349.t1.stop1	Gcaud9349.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1027_length_14887_cov_3.970330 8113..8115 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud9349.t1	Gcaud9349.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1027_length_14887_cov_3.970330 7237..8115 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1027_length_14887_cov_3.970330:7237..8115+
coding sequence from alignment at NODE_1027_length_14887_cov_3.970330:7237..8115+

mRNA sequence

>Gcaud9349.t1 ID=Gcaud9349.t1|Name=Gcaud9349.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=293bp
MPRKERPSDLTLSHEQSFSWDWLFSNASGRAWLRRHCDGRLVTRHPNTRQ
PQYSLYIHKPLERWEIEHAVVMFRIPKQRMYSNYLHLSLHYNASRSVKEP
LYSFLHRSEFWSQHTKLLIGRPYRDKRLITEREARFAVQLVQQQLPFVGL
TEQFRLSCRLFHAKFGGVPHLVQFENVRPSLSRYKRADSRNESFRYDETQ
FRDWVDSADEMVYAAAQTRFWDDVAQFKSEIEKDGLGEVLIKPAAERYRT
HVLRQHRRAGVNAIVPYHHRLSAPPPPQQQQQQQQQQQQQQQ*

spliced messenger RNA

>Gcaud9349.t1 ID=Gcaud9349.t1|Name=Gcaud9349.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_1027_length_14887_cov_3.970330:7237..8115+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCGCAAGGAGCGTCCGTCCGATCTCACGCTGTCGCACGAGCAGAG
TTTCTCGTGGGACTGGTTGTTTTCCAACGCGTCCGGGCGCGCGTGGCTGC
GGCGTCATTGCGACGGTCGCTTGGTGACGCGCCACCCAAACACGCGCCAG
CCGCAGTACTCGCTGTACATCCACAAGCCGCTGGAGCGCTGGGAGATCGA
GCACGCGGTGGTGATGTTTCGCATCCCCAAGCAGCGCATGTATTCCAACT
ACCTGCACCTCAGTCTGCACTACAACGCGTCCAGAAGCGTCAAGGAGCCG
CTGTACTCCTTTCTGCACCGCTCCGAGTTCTGGTCGCAGCACACCAAGCT
ACTCATCGGCCGTCCGTACCGCGACAAACGGCTCATCACCGAGCGCGAGG
CGCGCTTCGCCGTGCAGCTCGTGCAGCAGCAGCTGCCGTTTGTGGGGCTC
ACCGAGCAGTTCCGGCTGTCGTGCCGCCTGTTCCACGCCAAGTTTGGCGG
CGTGCCGCATCTGGTGCAGTTCGAAAACGTGCGCCCCAGTCTGAGTCGCT
ACAAACGCGCCGACAGTCGCAACGAGAGCTTCCGCTACGACGAGACGCAG
TTTCGCGACTGGGTGGACTCGGCCGACGAGATGGTGTACGCCGCGGCGCA
GACGCGCTTTTGGGACGACGTGGCGCAGTTCAAGAGCGAGATCGAGAAGG
ACGGGCTGGGCGAGGTGCTCATCAAGCCCGCGGCCGAGCGCTACCGCACG
CACGTGCTGCGGCAGCACCGCCGCGCCGGCGTCAACGCCATCGTGCCGTA
CCACCACCGCCTCTCCGCGCCGCCACCCCCCCAACAGCAGcaacaacaac
aacaacaacaacaacaacaacaacaaTGA

protein sequence of Gcaud9349.t1

>Gcaud9349.t1 ID=Gcaud9349.t1|Name=Gcaud9349.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=293bp
MPRKERPSDLTLSHEQSFSWDWLFSNASGRAWLRRHCDGRLVTRHPNTRQ
PQYSLYIHKPLERWEIEHAVVMFRIPKQRMYSNYLHLSLHYNASRSVKEP
LYSFLHRSEFWSQHTKLLIGRPYRDKRLITEREARFAVQLVQQQLPFVGL
TEQFRLSCRLFHAKFGGVPHLVQFENVRPSLSRYKRADSRNESFRYDETQ
FRDWVDSADEMVYAAAQTRFWDDVAQFKSEIEKDGLGEVLIKPAAERYRT
HVLRQHRRAGVNAIVPYHHRLSAPPPPQQQQQQQQQQQQQQQ*

mRNA from alignment at NODE_1027_length_14887_cov_3.970330:7237..8115+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud9349.t1 ID=Gcaud9349.t1|Name=Gcaud9349.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=879bp|location=Sequence derived from alignment at NODE_1027_length_14887_cov_3.970330:7237..8115+ (Gracilaria caudata M_176_S67 male)
ATGCCGCGCAAGGAGCGTCCGTCCGATCTCACGCTGTCGCACGAGCAGAG
TTTCTCGTGGGACTGGTTGTTTTCCAACGCGTCCGGGCGCGCGTGGCTGC
GGCGTCATTGCGACGGTCGCTTGGTGACGCGCCACCCAAACACGCGCCAG
CCGCAGTACTCGCTGTACATCCACAAGCCGCTGGAGCGCTGGGAGATCGA
GCACGCGGTGGTGATGTTTCGCATCCCCAAGCAGCGCATGTATTCCAACT
ACCTGCACCTCAGTCTGCACTACAACGCGTCCAGAAGCGTCAAGGAGCCG
CTGTACTCCTTTCTGCACCGCTCCGAGTTCTGGTCGCAGCACACCAAGCT
ACTCATCGGCCGTCCGTACCGCGACAAACGGCTCATCACCGAGCGCGAGG
CGCGCTTCGCCGTGCAGCTCGTGCAGCAGCAGCTGCCGTTTGTGGGGCTC
ACCGAGCAGTTCCGGCTGTCGTGCCGCCTGTTCCACGCCAAGTTTGGCGG
CGTGCCGCATCTGGTGCAGTTCGAAAACGTGCGCCCCAGTCTGAGTCGCT
ACAAACGCGCCGACAGTCGCAACGAGAGCTTCCGCTACGACGAGACGCAG
TTTCGCGACTGGGTGGACTCGGCCGACGAGATGGTGTACGCCGCGGCGCA
GACGCGCTTTTGGGACGACGTGGCGCAGTTCAAGAGCGAGATCGAGAAGG
ACGGGCTGGGCGAGGTGCTCATCAAGCCCGCGGCCGAGCGCTACCGCACG
CACGTGCTGCGGCAGCACCGCCGCGCCGGCGTCAACGCCATCGTGCCGTA
CCACCACCGCCTCTCCGCGCCGCCACCCCCCCAACAGCAGcaacaacaac
aacaacaacaacaacaacaacaacaaTGA

Coding sequence (CDS) from alignment at NODE_1027_length_14887_cov_3.970330:7237..8115+

>Gcaud9349.t1 ID=Gcaud9349.t1|Name=Gcaud9349.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=879bp|location=Sequence derived from alignment at NODE_1027_length_14887_cov_3.970330:7237..8115+ (Gracilaria caudata M_176_S67 male)
ATGCCGCGCAAGGAGCGTCCGTCCGATCTCACGCTGTCGCACGAGCAGAG
TTTCTCGTGGGACTGGTTGTTTTCCAACGCGTCCGGGCGCGCGTGGCTGC
GGCGTCATTGCGACGGTCGCTTGGTGACGCGCCACCCAAACACGCGCCAG
CCGCAGTACTCGCTGTACATCCACAAGCCGCTGGAGCGCTGGGAGATCGA
GCACGCGGTGGTGATGTTTCGCATCCCCAAGCAGCGCATGTATTCCAACT
ACCTGCACCTCAGTCTGCACTACAACGCGTCCAGAAGCGTCAAGGAGCCG
CTGTACTCCTTTCTGCACCGCTCCGAGTTCTGGTCGCAGCACACCAAGCT
ACTCATCGGCCGTCCGTACCGCGACAAACGGCTCATCACCGAGCGCGAGG
CGCGCTTCGCCGTGCAGCTCGTGCAGCAGCAGCTGCCGTTTGTGGGGCTC
ACCGAGCAGTTCCGGCTGTCGTGCCGCCTGTTCCACGCCAAGTTTGGCGG
CGTGCCGCATCTGGTGCAGTTCGAAAACGTGCGCCCCAGTCTGAGTCGCT
ACAAACGCGCCGACAGTCGCAACGAGAGCTTCCGCTACGACGAGACGCAG
TTTCGCGACTGGGTGGACTCGGCCGACGAGATGGTGTACGCCGCGGCGCA
GACGCGCTTTTGGGACGACGTGGCGCAGTTCAAGAGCGAGATCGAGAAGG
ACGGGCTGGGCGAGGTGCTCATCAAGCCCGCGGCCGAGCGCTACCGCACG
CACGTGCTGCGGCAGCACCGCCGCGCCGGCGTCAACGCCATCGTGCCGTA
CCACCACCGCCTCTCCGCGCCGCCACCCCCCCAACAGCAGcaacaacaac
aacaacaacaacaacaacaacaacaaTGA