Gcaud8380.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud8380.t1
Unique Name	Gcaud8380.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	281

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1026_length_14910_cov_4.896079	contig	NODE_1026_length_14910_cov_4.896079:12373..13215 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud8380	Gcaud8380	Gracilaria caudata M_176_S67 male	gene	NODE_1026_length_14910_cov_4.896079 12373..13215 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8380.t1.start1	Gcaud8380.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1026_length_14910_cov_4.896079 12373..12375 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8380.t1.CDS1	Gcaud8380.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1026_length_14910_cov_4.896079 12373..13215 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8380.t1.exon1	Gcaud8380.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1026_length_14910_cov_4.896079 12373..13215 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8380.t1.stop1	Gcaud8380.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1026_length_14910_cov_4.896079 13213..13215 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud8380.t1	Gcaud8380.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1026_length_14910_cov_4.896079 12373..13215 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1026_length_14910_cov_4.896079:12373..13215+
coding sequence from alignment at NODE_1026_length_14910_cov_4.896079:12373..13215+

mRNA sequence

>Gcaud8380.t1 ID=Gcaud8380.t1|Name=Gcaud8380.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=281bp
MTAHAPNPRFLLIASAFLFSIACASPMFTPAQNIVDDIIYGNLEKSSSGF
DLKYAPERQITPSIDQAAGIQRSRLGYVQTTGVVTGFTLPASRNIVVRAN
MSGSVSFEGKLASDIEDETERLLSGYSQELQDFYRREKESLQSRASGGYF
FFFQAAANYGYSDDEITRNTLEDGEFRDFRDRASAILASQTTSTLSADFN
VQFEGRSEGFAETITVFGYVYINQMTLSSGEIFNIAKKNSELLIADQNGN
VRDRETINVERENINDNLLNTELSSGRQIL*

spliced messenger RNA

>Gcaud8380.t1 ID=Gcaud8380.t1|Name=Gcaud8380.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_1026_length_14910_cov_4.896079:12373..13215+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCGCTCACGCGCCCAATCCAAGGTTTTTGCTCATTGCGAGCGCCTT
TTTGTTCTCCATTGCATGTGCTTCTCCAATGTTCACTCCGGCGCAGAATA
TCGTCGACGACATCATTTACGGCAATTTGGAAAAGTCTTCGTCGGGTTTT
GACCTGAAATATGCTCCGGAAAGACAGATCACACCGTCTATTGATCAGGC
AGCCGGGATCCAGAGGTCCAGGTTGGGATACGTTCAGACGACAGGCGTCG
TGACTGGCTTCACTCTACCAGCAAGCAGAAATATTGTTGTGAGGGCCAAC
ATGAGCGGATCCGTCTCTTTTGAAGGAAAACTGGCGAGTGATATCGAAGA
CGAAACCGAGAGGCTCCTAAGCGGCTATTCACAGGAGCTTCAAGACTTCT
ACCGTAGGGAGAAGGAGAGCCTGCAGTCAAGAGCTAGTGGTGGATATTTC
TTCTTCTTCCAAGCCGCAGCTAACTATGGCTACTCGGATGATGAAATAAC
GCGCAACACTCTGGAAGATGGGGAATTCCGAGACTTCCGTGACAGGGCCA
GCGCAATTCTGGCTTCCCAGACAACTTCTACTTTGTCTGCCGATTTCAAT
GTGCAGTTTGAAGGTCGCTCCGAGGGATTTGCTGAGACGATAACAGTGTT
TGGCTATGTGTATATCAACCAGATGACATTGAGCTCTGGAGAGATCTTCA
ACATTGCTAAGAAGAATTCCGAACTCCTCATAGCCGACCAGAACGGAAAT
GTTCGAGACAGAGAGACGATCAACGTTGAGCGGGAAAATATTAACGACAA
CTTACTGAACACCGAACTATCGTCTGGCCGCCAAATCTTATAA

protein sequence of Gcaud8380.t1

>Gcaud8380.t1 ID=Gcaud8380.t1|Name=Gcaud8380.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=281bp
MTAHAPNPRFLLIASAFLFSIACASPMFTPAQNIVDDIIYGNLEKSSSGF
DLKYAPERQITPSIDQAAGIQRSRLGYVQTTGVVTGFTLPASRNIVVRAN
MSGSVSFEGKLASDIEDETERLLSGYSQELQDFYRREKESLQSRASGGYF
FFFQAAANYGYSDDEITRNTLEDGEFRDFRDRASAILASQTTSTLSADFN
VQFEGRSEGFAETITVFGYVYINQMTLSSGEIFNIAKKNSELLIADQNGN
VRDRETINVERENINDNLLNTELSSGRQIL*

mRNA from alignment at NODE_1026_length_14910_cov_4.896079:12373..13215+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud8380.t1 ID=Gcaud8380.t1|Name=Gcaud8380.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=843bp|location=Sequence derived from alignment at NODE_1026_length_14910_cov_4.896079:12373..13215+ (Gracilaria caudata M_176_S67 male)
ATGACCGCTCACGCGCCCAATCCAAGGTTTTTGCTCATTGCGAGCGCCTT
TTTGTTCTCCATTGCATGTGCTTCTCCAATGTTCACTCCGGCGCAGAATA
TCGTCGACGACATCATTTACGGCAATTTGGAAAAGTCTTCGTCGGGTTTT
GACCTGAAATATGCTCCGGAAAGACAGATCACACCGTCTATTGATCAGGC
AGCCGGGATCCAGAGGTCCAGGTTGGGATACGTTCAGACGACAGGCGTCG
TGACTGGCTTCACTCTACCAGCAAGCAGAAATATTGTTGTGAGGGCCAAC
ATGAGCGGATCCGTCTCTTTTGAAGGAAAACTGGCGAGTGATATCGAAGA
CGAAACCGAGAGGCTCCTAAGCGGCTATTCACAGGAGCTTCAAGACTTCT
ACCGTAGGGAGAAGGAGAGCCTGCAGTCAAGAGCTAGTGGTGGATATTTC
TTCTTCTTCCAAGCCGCAGCTAACTATGGCTACTCGGATGATGAAATAAC
GCGCAACACTCTGGAAGATGGGGAATTCCGAGACTTCCGTGACAGGGCCA
GCGCAATTCTGGCTTCCCAGACAACTTCTACTTTGTCTGCCGATTTCAAT
GTGCAGTTTGAAGGTCGCTCCGAGGGATTTGCTGAGACGATAACAGTGTT
TGGCTATGTGTATATCAACCAGATGACATTGAGCTCTGGAGAGATCTTCA
ACATTGCTAAGAAGAATTCCGAACTCCTCATAGCCGACCAGAACGGAAAT
GTTCGAGACAGAGAGACGATCAACGTTGAGCGGGAAAATATTAACGACAA
CTTACTGAACACCGAACTATCGTCTGGCCGCCAAATCTTATAA

Coding sequence (CDS) from alignment at NODE_1026_length_14910_cov_4.896079:12373..13215+

>Gcaud8380.t1 ID=Gcaud8380.t1|Name=Gcaud8380.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=843bp|location=Sequence derived from alignment at NODE_1026_length_14910_cov_4.896079:12373..13215+ (Gracilaria caudata M_176_S67 male)
ATGACCGCTCACGCGCCCAATCCAAGGTTTTTGCTCATTGCGAGCGCCTT
TTTGTTCTCCATTGCATGTGCTTCTCCAATGTTCACTCCGGCGCAGAATA
TCGTCGACGACATCATTTACGGCAATTTGGAAAAGTCTTCGTCGGGTTTT
GACCTGAAATATGCTCCGGAAAGACAGATCACACCGTCTATTGATCAGGC
AGCCGGGATCCAGAGGTCCAGGTTGGGATACGTTCAGACGACAGGCGTCG
TGACTGGCTTCACTCTACCAGCAAGCAGAAATATTGTTGTGAGGGCCAAC
ATGAGCGGATCCGTCTCTTTTGAAGGAAAACTGGCGAGTGATATCGAAGA
CGAAACCGAGAGGCTCCTAAGCGGCTATTCACAGGAGCTTCAAGACTTCT
ACCGTAGGGAGAAGGAGAGCCTGCAGTCAAGAGCTAGTGGTGGATATTTC
TTCTTCTTCCAAGCCGCAGCTAACTATGGCTACTCGGATGATGAAATAAC
GCGCAACACTCTGGAAGATGGGGAATTCCGAGACTTCCGTGACAGGGCCA
GCGCAATTCTGGCTTCCCAGACAACTTCTACTTTGTCTGCCGATTTCAAT
GTGCAGTTTGAAGGTCGCTCCGAGGGATTTGCTGAGACGATAACAGTGTT
TGGCTATGTGTATATCAACCAGATGACATTGAGCTCTGGAGAGATCTTCA
ACATTGCTAAGAAGAATTCCGAACTCCTCATAGCCGACCAGAACGGAAAT
GTTCGAGACAGAGAGACGATCAACGTTGAGCGGGAAAATATTAACGACAA
CTTACTGAACACCGAACTATCGTCTGGCCGCCAAATCTTATAA