Gcaud3574.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud3574.t1
Unique Name	Gcaud3574.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	519

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_9_length_88726_cov_4.624437	contig	NODE_9_length_88726_cov_4.624437:67425..68981 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	81824.XP_001747319.1
PFAMs	EXS
Max annot lvl	33154\|Opisthokonta
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006486,GO:0006621,GO:0006807,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0016020,GO:0019538,GO:0031984,GO:0032507,GO:0033036,GO:0033365,GO:0034613,GO:0034645,GO:0035437,GO:0036211,GO:0042175,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045185,GO:0051179,GO:0051235,GO:0051641,GO:0051651,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0070972,GO:0071704,GO:0072595,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Evalue	6.65e-26
EggNOG OGs	COG5409@1\|root,KOG1162@2759\|Eukaryota,39U3F@33154\|Opisthokonta
Description	protein retention in ER lumen
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud3574	Gcaud3574	Gracilaria caudata M_176_S67 male	gene	NODE_9_length_88726_cov_4.624437 67425..68981 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3574.t1.stop1	Gcaud3574.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_9_length_88726_cov_4.624437 67425..67427 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3574.t1.CDS1	Gcaud3574.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_9_length_88726_cov_4.624437 67425..68981 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3574.t1.exon1	Gcaud3574.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_9_length_88726_cov_4.624437 67425..68981 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3574.t1.start1	Gcaud3574.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_9_length_88726_cov_4.624437 68979..68981 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud3574.t1	Gcaud3574.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_9_length_88726_cov_4.624437 67425..68981 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_9_length_88726_cov_4.624437:67425..68981-
coding sequence from alignment at NODE_9_length_88726_cov_4.624437:67425..68981-

mRNA sequence

>Gcaud3574.t1 ID=Gcaud3574.t1|Name=Gcaud3574.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=519bp
MCNESPPLGPTPPPATSGVPVVAAEPMPGSKCHLCHRDAEKPSQPEQQPT
ADAKSLPPAHAHHRSISVDEKGYFTVYDPESFSEEAHGFAGRIVKRMGIF
AYLLFFLVPLAFVAIVFAIVPLGNPTVPNISEQWVFIFVSNSAVAVAISY
LYNATFLACARIERPFRTSLAPLIAVFLAEIAIMSPVLLTHGIYDWIGIV
ALTVCYLALFVALRVTYHTHHQLVHAFFRRFMFLLILFIPILSAFVIAYR
ETSSGALQSFISFMFAFITFVYRRIMLSRLDPFPLEISQLLSGFWVQNLG
DLTTILAFPQVSRPAVYAAIFFSNALSNVAFLVFVSDPWIYKIRPTLKTY
VLNGIKGNFPIPPIPEADESFDPVNRGHDANTGGYRRRQFRFFFFRLLSQ
AISMFMYLSISPMLRFGLNKEFTPLATFTRTQYRHSMIYAAANLVFIAAV
AALGYFYLHKRHHQTFHEIREIHKHDLVHHTWVGLVTAIITHNLILTIAI
ILSHYCIFSSFQGCVFVT*

spliced messenger RNA

>Gcaud3574.t1 ID=Gcaud3574.t1|Name=Gcaud3574.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:67425..68981- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCAACGAGTCTCCGCCGCTGGGGCCCACACCGCCGCCAGCTACTTC
AGGCGTACCCGTCGTGGCGGCAGAGCCTATGCCCGGCTCCAAATGTCATC
TTTGTCACCGTGACGCCGAAAAGCCCTCTCAACCTGAACAGCAGCCCACT
GCCGATGCAAAGTCTCTCCCGCCCGCGCACGCGCATCATCGGTCCATTTC
GGTCGACGAAAAGGGCTATTTCACCGTGTACGACCCGGAATCCTTCTCTG
AGGAGGCGCATGGATTTGCCGGCAGAATTGTCAAACGCATGGGAATCTTT
GCTTATTTGCTCTTCTTTCTGGTTCCATTAGCGTTTGTTGCCATCGTGTT
CGCCATCGTGCCGCTTGGCAACCCTACCGTGCCCAACATTTCGGAGCAGT
GGGTGTTCATTTTCGTGTCCAATAGTGCCGTTGCGGTTGCCATATCCTAC
TTGTACAACGCTACTTTCCTCGCTTGTGCTCGCATCGAACGACCGTTTCG
CACCTCGCTTGCACCTCTCATTGCGGTCTTTCTGGCTGAAATAGCCATCA
TGTCACCAGTTCTGCTCACGCATGGCATATATGACTGGATTGGTATAGTG
GCGCTCACAGTGTGCTATCTGGCCCTGTTTGTGGCTCTGAGGGTCACCTA
TCACACTCATCACCAACTTGTGCACGCCTTCTTCAGACGTTTTATGTTCT
TGCTGATTCTTTTCATCCCCATATTGTCAGCTTTTGTTATAGCGTATCGA
GAAACCTCATCTGGTGCCTTGCAGTCTTTTATCTCATTCATGTTTGCGTT
TATTACTTTTGTTTACAGACGCATCATGCTTTCCAGACTCGATCCATTTC
CGCTGGAAATCAGTCAGCTTCTCTCCGGCTTCTGGGTACAGAATTTGGGA
GATCTCACCACAATTTTGGCCTTCCCGCAAGTATCTCGTCCAGCTGTATA
TGCTGCCATCTTCTTCTCAAACGCTCTCAGCAATGTTGCGTTTCTGGTGT
TTGTTTCGGACCCGTGGATATATAAGATTCGTCCCACCTTGAAGACTTAT
GTGCTAAACGGCATAAAAGGAAACTTTCCGATTCCACCCATTCCCGAAGC
TGATGAATCATTTGATCCGGTAAACAGAGGACATGACGCAAACACTGGCG
GGTATCGGAGAAGACAATTTCGGTTCTTTTTCTTCCGTTTATTGTCGCAG
GCCATTTCTATGTTTATGTATCTCAGCATCTCACCAATGTTGCGCTTCGG
ATTGAATAAGGAATTTACACCGTTGGCGACGTTCACTAGGACACAATACA
GGCATTCGATGATCTACGCGGCCGCAAATCTGGTTTTCATTGCTGCCGTT
GCTGCTCTGGGTTACTTTTACTTACATAAACGGCATCACCAAACATTCCA
TGAGATTCGGGAGATTCACAAACACGATTTGGTGCATCACACTTGGGTTG
GTCTTGTGACTGCAATCATTACGCATAATTTGATCCTGACGATTGCTATC
ATCCTGTCGCACTACTGTATTTTTTCGTCATTCCAAGGATGCGTTTTCGT
AACTTGA

protein sequence of Gcaud3574.t1

>Gcaud3574.t1 ID=Gcaud3574.t1|Name=Gcaud3574.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=519bp
MCNESPPLGPTPPPATSGVPVVAAEPMPGSKCHLCHRDAEKPSQPEQQPT
ADAKSLPPAHAHHRSISVDEKGYFTVYDPESFSEEAHGFAGRIVKRMGIF
AYLLFFLVPLAFVAIVFAIVPLGNPTVPNISEQWVFIFVSNSAVAVAISY
LYNATFLACARIERPFRTSLAPLIAVFLAEIAIMSPVLLTHGIYDWIGIV
ALTVCYLALFVALRVTYHTHHQLVHAFFRRFMFLLILFIPILSAFVIAYR
ETSSGALQSFISFMFAFITFVYRRIMLSRLDPFPLEISQLLSGFWVQNLG
DLTTILAFPQVSRPAVYAAIFFSNALSNVAFLVFVSDPWIYKIRPTLKTY
VLNGIKGNFPIPPIPEADESFDPVNRGHDANTGGYRRRQFRFFFFRLLSQ
AISMFMYLSISPMLRFGLNKEFTPLATFTRTQYRHSMIYAAANLVFIAAV
AALGYFYLHKRHHQTFHEIREIHKHDLVHHTWVGLVTAIITHNLILTIAI
ILSHYCIFSSFQGCVFVT*

mRNA from alignment at NODE_9_length_88726_cov_4.624437:67425..68981-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud3574.t1 ID=Gcaud3574.t1|Name=Gcaud3574.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:67425..68981- (Gracilaria caudata M_176_S67 male)
ATGTGCAACGAGTCTCCGCCGCTGGGGCCCACACCGCCGCCAGCTACTTC
AGGCGTACCCGTCGTGGCGGCAGAGCCTATGCCCGGCTCCAAATGTCATC
TTTGTCACCGTGACGCCGAAAAGCCCTCTCAACCTGAACAGCAGCCCACT
GCCGATGCAAAGTCTCTCCCGCCCGCGCACGCGCATCATCGGTCCATTTC
GGTCGACGAAAAGGGCTATTTCACCGTGTACGACCCGGAATCCTTCTCTG
AGGAGGCGCATGGATTTGCCGGCAGAATTGTCAAACGCATGGGAATCTTT
GCTTATTTGCTCTTCTTTCTGGTTCCATTAGCGTTTGTTGCCATCGTGTT
CGCCATCGTGCCGCTTGGCAACCCTACCGTGCCCAACATTTCGGAGCAGT
GGGTGTTCATTTTCGTGTCCAATAGTGCCGTTGCGGTTGCCATATCCTAC
TTGTACAACGCTACTTTCCTCGCTTGTGCTCGCATCGAACGACCGTTTCG
CACCTCGCTTGCACCTCTCATTGCGGTCTTTCTGGCTGAAATAGCCATCA
TGTCACCAGTTCTGCTCACGCATGGCATATATGACTGGATTGGTATAGTG
GCGCTCACAGTGTGCTATCTGGCCCTGTTTGTGGCTCTGAGGGTCACCTA
TCACACTCATCACCAACTTGTGCACGCCTTCTTCAGACGTTTTATGTTCT
TGCTGATTCTTTTCATCCCCATATTGTCAGCTTTTGTTATAGCGTATCGA
GAAACCTCATCTGGTGCCTTGCAGTCTTTTATCTCATTCATGTTTGCGTT
TATTACTTTTGTTTACAGACGCATCATGCTTTCCAGACTCGATCCATTTC
CGCTGGAAATCAGTCAGCTTCTCTCCGGCTTCTGGGTACAGAATTTGGGA
GATCTCACCACAATTTTGGCCTTCCCGCAAGTATCTCGTCCAGCTGTATA
TGCTGCCATCTTCTTCTCAAACGCTCTCAGCAATGTTGCGTTTCTGGTGT
TTGTTTCGGACCCGTGGATATATAAGATTCGTCCCACCTTGAAGACTTAT
GTGCTAAACGGCATAAAAGGAAACTTTCCGATTCCACCCATTCCCGAAGC
TGATGAATCATTTGATCCGGTAAACAGAGGACATGACGCAAACACTGGCG
GGTATCGGAGAAGACAATTTCGGTTCTTTTTCTTCCGTTTATTGTCGCAG
GCCATTTCTATGTTTATGTATCTCAGCATCTCACCAATGTTGCGCTTCGG
ATTGAATAAGGAATTTACACCGTTGGCGACGTTCACTAGGACACAATACA
GGCATTCGATGATCTACGCGGCCGCAAATCTGGTTTTCATTGCTGCCGTT
GCTGCTCTGGGTTACTTTTACTTACATAAACGGCATCACCAAACATTCCA
TGAGATTCGGGAGATTCACAAACACGATTTGGTGCATCACACTTGGGTTG
GTCTTGTGACTGCAATCATTACGCATAATTTGATCCTGACGATTGCTATC
ATCCTGTCGCACTACTGTATTTTTTCGTCATTCCAAGGATGCGTTTTCGT
AACTTGA

Coding sequence (CDS) from alignment at NODE_9_length_88726_cov_4.624437:67425..68981-

>Gcaud3574.t1 ID=Gcaud3574.t1|Name=Gcaud3574.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1557bp|location=Sequence derived from alignment at NODE_9_length_88726_cov_4.624437:67425..68981- (Gracilaria caudata M_176_S67 male)
ATGTGCAACGAGTCTCCGCCGCTGGGGCCCACACCGCCGCCAGCTACTTC
AGGCGTACCCGTCGTGGCGGCAGAGCCTATGCCCGGCTCCAAATGTCATC
TTTGTCACCGTGACGCCGAAAAGCCCTCTCAACCTGAACAGCAGCCCACT
GCCGATGCAAAGTCTCTCCCGCCCGCGCACGCGCATCATCGGTCCATTTC
GGTCGACGAAAAGGGCTATTTCACCGTGTACGACCCGGAATCCTTCTCTG
AGGAGGCGCATGGATTTGCCGGCAGAATTGTCAAACGCATGGGAATCTTT
GCTTATTTGCTCTTCTTTCTGGTTCCATTAGCGTTTGTTGCCATCGTGTT
CGCCATCGTGCCGCTTGGCAACCCTACCGTGCCCAACATTTCGGAGCAGT
GGGTGTTCATTTTCGTGTCCAATAGTGCCGTTGCGGTTGCCATATCCTAC
TTGTACAACGCTACTTTCCTCGCTTGTGCTCGCATCGAACGACCGTTTCG
CACCTCGCTTGCACCTCTCATTGCGGTCTTTCTGGCTGAAATAGCCATCA
TGTCACCAGTTCTGCTCACGCATGGCATATATGACTGGATTGGTATAGTG
GCGCTCACAGTGTGCTATCTGGCCCTGTTTGTGGCTCTGAGGGTCACCTA
TCACACTCATCACCAACTTGTGCACGCCTTCTTCAGACGTTTTATGTTCT
TGCTGATTCTTTTCATCCCCATATTGTCAGCTTTTGTTATAGCGTATCGA
GAAACCTCATCTGGTGCCTTGCAGTCTTTTATCTCATTCATGTTTGCGTT
TATTACTTTTGTTTACAGACGCATCATGCTTTCCAGACTCGATCCATTTC
CGCTGGAAATCAGTCAGCTTCTCTCCGGCTTCTGGGTACAGAATTTGGGA
GATCTCACCACAATTTTGGCCTTCCCGCAAGTATCTCGTCCAGCTGTATA
TGCTGCCATCTTCTTCTCAAACGCTCTCAGCAATGTTGCGTTTCTGGTGT
TTGTTTCGGACCCGTGGATATATAAGATTCGTCCCACCTTGAAGACTTAT
GTGCTAAACGGCATAAAAGGAAACTTTCCGATTCCACCCATTCCCGAAGC
TGATGAATCATTTGATCCGGTAAACAGAGGACATGACGCAAACACTGGCG
GGTATCGGAGAAGACAATTTCGGTTCTTTTTCTTCCGTTTATTGTCGCAG
GCCATTTCTATGTTTATGTATCTCAGCATCTCACCAATGTTGCGCTTCGG
ATTGAATAAGGAATTTACACCGTTGGCGACGTTCACTAGGACACAATACA
GGCATTCGATGATCTACGCGGCCGCAAATCTGGTTTTCATTGCTGCCGTT
GCTGCTCTGGGTTACTTTTACTTACATAAACGGCATCACCAAACATTCCA
TGAGATTCGGGAGATTCACAAACACGATTTGGTGCATCACACTTGGGTTG
GTCTTGTGACTGCAATCATTACGCATAATTTGATCCTGACGATTGCTATC
ATCCTGTCGCACTACTGTATTTTTTCGTCATTCCAAGGATGCGTTTTCGT
AACTTGA