Gcaud8738.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud8738.t1
Unique NameGcaud8738.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length228
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_122_length_46896_cov_4.534024contigNODE_122_length_46896_cov_4.534024:3631..4314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002601947.1
PFAMsSRCR,VWA
Max annot lvl33208|Metazoa
KEGG koko:K13912
KEGG Pathwayko04970,map04970
Evalue2.83e-08
EggNOG OGsKOG2579@1|root,KOG3544@1|root,KOG2579@2759|Eukaryota,KOG3544@2759|Eukaryota,39NMG@33154|Opisthokonta,3CQ5T@33208|Metazoa,3E6B0@33213|Bilateria,48RRQ@7711|Chordata
DescriptionScavenger receptor Cys-rich
COG categoryW
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8738Gcaud8738Gracilaria caudata M_176_S67 malegeneNODE_122_length_46896_cov_4.534024 3631..4314 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8738.t1.stop1Gcaud8738.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_122_length_46896_cov_4.534024 3631..3633 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8738.t1.CDS1Gcaud8738.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_122_length_46896_cov_4.534024 3631..4314 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8738.t1.exon1Gcaud8738.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_122_length_46896_cov_4.534024 3631..4314 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8738.t1.start1Gcaud8738.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_122_length_46896_cov_4.534024 4312..4314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud8738.t1Gcaud8738.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_122_length_46896_cov_4.534024 3631..4314 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud8738.t1 ID=Gcaud8738.t1|Name=Gcaud8738.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=228bp
MKLLFRFLVSALLICVVRAVSLQPGGVVARSELRAASNFVRYRGCSINIC
FAIDGSGSMNHSEFDMQKNFIMDMVSIISYDNNASYAAVQYGESAYPILS
LTDDEQEFIWHVSSTPFQGDSRTSIAAGIEYCFFELSSAPSAVSKIVLVG
DGRHNAGRDPVEWARFFKSYFGHGGSLSAVSVGINDNQYMEDIAAAGGGH
AFAIDDFVELSYVIEDIIFDVCGAVSS*
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spliced messenger RNA

>Gcaud8738.t1 ID=Gcaud8738.t1|Name=Gcaud8738.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=684bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:3631..4314- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTGTTGTTCCGTTTCCTTGTTTCGGCCCTCTTGATTTGTGTGGT
GAGAGCAGTTTCGCTGCAACCTGGGGGCGTTGTGGCACGCTCCGAACTTA
GGGCGGCATCGAACTTTGTGCGTTACAGAGGGTGCAGTATTAACATATGC
TTTGCGATCGATGGAAGTGGTTCGATGAATCATTCTGAGTTCGACATGCA
GAAGAACTTCATTATGGATATGGTTTCAATCATTTCCTATGACAACAACG
CTTCGTACGCGGCTGTACAATATGGGGAATCCGCTTATCCCATTTTGTCG
CTAACTGATGACGAACAAGAGTTTATATGGCATGTTTCCAGCACACCATT
CCAGGGAGATTCGAGAACATCTATAGCGGCCGGAATTGAATATTGCTTCT
TTGAACTATCGTCTGCTCCGAGTGCGGTTTCAAAGATTGTATTAGTCGGA
GATGGACGCCATAACGCCGGCCGCGATCCGGTGGAATGGGCTCGTTTCTT
CAAAAGTTACTTTGGGCACGGGGGATCTTTGAGTGCGGTTAGTGTTGGAA
TCAATGACAATCAGTACATGGAGGACATTGCTGCTGCTGGAGGCGGTCAT
GCATTCGCCATCGATGACTTTGTAGAACTATCATATGTGATCGAAGATAT
CATATTCGACGTATGTGGAGCCGTTAGTTCGTGA
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protein sequence of Gcaud8738.t1

>Gcaud8738.t1 ID=Gcaud8738.t1|Name=Gcaud8738.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=228bp
MKLLFRFLVSALLICVVRAVSLQPGGVVARSELRAASNFVRYRGCSINIC
FAIDGSGSMNHSEFDMQKNFIMDMVSIISYDNNASYAAVQYGESAYPILS
LTDDEQEFIWHVSSTPFQGDSRTSIAAGIEYCFFELSSAPSAVSKIVLVG
DGRHNAGRDPVEWARFFKSYFGHGGSLSAVSVGINDNQYMEDIAAAGGGH
AFAIDDFVELSYVIEDIIFDVCGAVSS*
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mRNA from alignment at NODE_122_length_46896_cov_4.534024:3631..4314-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud8738.t1 ID=Gcaud8738.t1|Name=Gcaud8738.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=684bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:3631..4314- (Gracilaria caudata M_176_S67 male)
ATGAAGCTGTTGTTCCGTTTCCTTGTTTCGGCCCTCTTGATTTGTGTGGT
GAGAGCAGTTTCGCTGCAACCTGGGGGCGTTGTGGCACGCTCCGAACTTA
GGGCGGCATCGAACTTTGTGCGTTACAGAGGGTGCAGTATTAACATATGC
TTTGCGATCGATGGAAGTGGTTCGATGAATCATTCTGAGTTCGACATGCA
GAAGAACTTCATTATGGATATGGTTTCAATCATTTCCTATGACAACAACG
CTTCGTACGCGGCTGTACAATATGGGGAATCCGCTTATCCCATTTTGTCG
CTAACTGATGACGAACAAGAGTTTATATGGCATGTTTCCAGCACACCATT
CCAGGGAGATTCGAGAACATCTATAGCGGCCGGAATTGAATATTGCTTCT
TTGAACTATCGTCTGCTCCGAGTGCGGTTTCAAAGATTGTATTAGTCGGA
GATGGACGCCATAACGCCGGCCGCGATCCGGTGGAATGGGCTCGTTTCTT
CAAAAGTTACTTTGGGCACGGGGGATCTTTGAGTGCGGTTAGTGTTGGAA
TCAATGACAATCAGTACATGGAGGACATTGCTGCTGCTGGAGGCGGTCAT
GCATTCGCCATCGATGACTTTGTAGAACTATCATATGTGATCGAAGATAT
CATATTCGACGTATGTGGAGCCGTTAGTTCGTGA
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Coding sequence (CDS) from alignment at NODE_122_length_46896_cov_4.534024:3631..4314-

>Gcaud8738.t1 ID=Gcaud8738.t1|Name=Gcaud8738.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=684bp|location=Sequence derived from alignment at NODE_122_length_46896_cov_4.534024:3631..4314- (Gracilaria caudata M_176_S67 male)
ATGAAGCTGTTGTTCCGTTTCCTTGTTTCGGCCCTCTTGATTTGTGTGGT
GAGAGCAGTTTCGCTGCAACCTGGGGGCGTTGTGGCACGCTCCGAACTTA
GGGCGGCATCGAACTTTGTGCGTTACAGAGGGTGCAGTATTAACATATGC
TTTGCGATCGATGGAAGTGGTTCGATGAATCATTCTGAGTTCGACATGCA
GAAGAACTTCATTATGGATATGGTTTCAATCATTTCCTATGACAACAACG
CTTCGTACGCGGCTGTACAATATGGGGAATCCGCTTATCCCATTTTGTCG
CTAACTGATGACGAACAAGAGTTTATATGGCATGTTTCCAGCACACCATT
CCAGGGAGATTCGAGAACATCTATAGCGGCCGGAATTGAATATTGCTTCT
TTGAACTATCGTCTGCTCCGAGTGCGGTTTCAAAGATTGTATTAGTCGGA
GATGGACGCCATAACGCCGGCCGCGATCCGGTGGAATGGGCTCGTTTCTT
CAAAAGTTACTTTGGGCACGGGGGATCTTTGAGTGCGGTTAGTGTTGGAA
TCAATGACAATCAGTACATGGAGGACATTGCTGCTGCTGGAGGCGGTCAT
GCATTCGCCATCGATGACTTTGTAGAACTATCATATGTGATCGAAGATAT
CATATTCGACGTATGTGGAGCCGTTAGTTCGTGA
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