Gcaud8738.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud8738.t1
Unique NameGcaud8738.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length228
Homology
BLAST of Gcaud8738.t1 vs. uniprot
Match: A0A2V3IQR5_9FLOR (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 110 bits (274), Expect = 6.990e-26
Identity = 68/203 (33.50%), Postives = 105/203 (51.72%), Query Frame = 0
Query:   26 GVVARSELRAASNFVRYRGCSINICFAIDGSGSMNHSEFDMQKNFIMDMVSIISYDNNASYAAVQYGESAYPILSLTDDEQEFIWHVSSTPFQGDSRTSIAAGIEYCFFELSSAPSAVSKIVLVGDGRHNAGR-----DPVEWARFFKSYFGHGGSLSAVSVGINDNQYMEDIAAAGGGHAFAIDDFVELSYVIEDIIFDVCG 223
            G    +E++ A        C  NICFA+DGSGSM+ +EF ++K+F   + ++++YD  A +AAVQYG     I  LT+D   F+  V  T      RT IA G+  C  +          IVL+GDGR N        DPV  A+ F +      ++SAV VG + +  M    A G  + F +  ++E++ V+ +++ +VCG
Sbjct:   38 GTANEAEVQLALQIAEKTRCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTEDADAFLEAVHYTESLNAPRTFIAPGLAGCIRQFYYLKGEPKHIVLLGDGRSNFDSKLPPLDPVSIAQAFLA--NPNNTISAVGVGFDADDTMLTNIAGGEENVFNVGQWLEVTTVLAELVGEVCG 238          
BLAST of Gcaud8738.t1 vs. uniprot
Match: A0A672NVY9_SINGR (Integrin alpha-L-like n=2 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672NVY9_SINGR)

HSP 1 Score: 61.6 bits (148), Expect = 2.040e-7
Identity = 38/126 (30.16%), Postives = 61/126 (48.41%), Query Frame = 0
Query:   31 SELRAASNF-VRYRGCS---INICFAIDGSGSMNHSEFDMQKNFIMDMVSIISYDNNASYAAVQYGESAYPILSLTDDEQEFIWHVSSTPFQGDSRTSIAAGIEYCFFELSSAPSAVSKIVLVGDG 152
            S L+A SNF + Y+ C+   +N+ F  DGS SM   EFDM KNFI D++  +S +++  +AAVQ+      +    D +               + T+    I Y      + P+A   +V++ DG
Sbjct:  111 SSLQAVSNFTIAYQECTKREVNLVFLFDGSASMKTREFDMNKNFIKDVMKKLS-NSSIKFAAVQFSSEIRTVFDFNDYQNGSAEEKLMKEKHMKTLTNTYRAINYVLVSSGADPNAQKALVIITDG 235          
BLAST of Gcaud8738.t1 vs. uniprot
Match: UPI00101DF135 (VWA domain-containing protein n=2 Tax=unclassified Candidatus Chloroploca TaxID=2685712 RepID=UPI00101DF135)

HSP 1 Score: 61.2 bits (147), Expect = 2.860e-7
Identity = 48/178 (26.97%), Postives = 86/178 (48.31%), Query Frame = 0
Query:   47 INICFAIDGSGSMNHSEFDMQKNFIMDMVSIISYD-NNASYAAVQYGESA---YPILSLTDDEQEFIWHVSSTPFQGDSRTSIAAGIEYCFFELSSAPSA--VSKIVLVGDGRHNAGRDPVEWARFFKSYFGHGGSLSAVSVGINDNQYMEDIAAAGGGHAFAIDDFVELSYVIEDII 218
            +++   +DGSGS++ + F   ++F+ ++V+  +   ++A     Q+G      Y  L L DD    +  V++   Q D  T I  G++    EL++   A     ++L+ DG HN G DPVE A+  +    H   L A++VG   N    +   A     F++ +F  LS ++  I+
Sbjct:  207 LDLMLVLDGSGSISSTNFRQMRDFVRNLVNSYTVSPDDARVGIAQFGTQGRGRYE-LRLADDPSVVLARVNAMT-QLDGYTDIQEGLQLGREELAANGRAGVPQVMILLTDGAHNQGGDPVEEAQLVRDAGMH---LFAIAVGSGPNLPQLNALTADPDRVFSVSNFASLSTILSQIV 379          
BLAST of Gcaud8738.t1 vs. uniprot
Match: A0A498NLN7_LABRO (Integrin alpha-L-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498NLN7_LABRO)

HSP 1 Score: 58.2 bits (139), Expect = 3.150e-6
Identity = 40/132 (30.30%), Postives = 63/132 (47.73%), Query Frame = 0
Query:   31 SELRAASNF-VRYRGCS---INICFAIDGSGSMNHSEFDMQKNFIMDMVSIISYDNNASYAAVQYGESAYPILSLTDDEQEFIWHVSSTPFQGDSRTSIAAGIEYCFFEL------SSAPSAVSKIVLVGDG 152
            S L+A SNF V Y+ C+   +N+ F  DGS SM   EF M K+FI +++  +S D++  +AAVQ+      +    D +  F            S T+    I Y    L       ++P+A   +V++ DG
Sbjct:   26 SSLQAISNFTVAYQECTKREVNVVFLFDGSSSMRTHEFQMNKDFIKNVMKELS-DSSIKFAAVQFSSDLRTVFDFNDYQNGFAEEKLMKERHMKSLTNTYRAINYVLKNLLNNVSSGASPNAQKALVIITDG 156          
BLAST of Gcaud8738.t1 vs. uniprot
Match: A0A1X7VFU3_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VFU3_AMPQE)

HSP 1 Score: 58.2 bits (139), Expect = 3.400e-6
Identity = 45/181 (24.86%), Postives = 86/181 (47.51%), Query Frame = 0
Query:   47 INICFAIDGSGSMNHSEFDMQKNFIMDMVSIISYDNNASYAAVQYGESAYPILSLTD-DEQEFIWHVSSTPFQGDSRTSIAAGIEYCF--FELSSAPSAVSKIVLVGDGRHNAGRDPVEWARFFKSYFGHGGSLSAVSVGINDNQYMEDIAAAGGGHAFAIDDFVELSY--VIEDIIFDVC 222
            ++  F +D S S+  ++F++QK F+ ++V   +    A++  V++  SA  ++ L     +E I  +++ P+Q  S T+ AAGI      F L+        ++++ DG  N   D  E  +  ++    G  + A+ VG N N+      A      F + +F   S+  ++ DI+ D C
Sbjct:  952 MDFMFVVDSSSSITPTDFNVQKEFLTEIVKQYNSSETANFGLVRFSSSASVVIGLASVSGEELISAINAVPYQPGS-TNTAAGIRLAMQQFLLNRRSQVPQVMIVLTDGASN---DFDETVKAAQASHQSGIEIFAIGVGQNANEDELKEIATSEKKVFNVAEFKRESFGAILSDIVRDTC 1128          
The following BLAST results are available for this feature:
BLAST of Gcaud8738.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IQR5_9FLOR6.990e-2633.50Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A672NVY9_SINGR2.040e-730.16Integrin alpha-L-like n=2 Tax=Sinocyclocheilus gra... [more]
UPI00101DF1352.860e-726.97VWA domain-containing protein n=2 Tax=unclassified... [more]
A0A498NLN7_LABRO3.150e-630.30Integrin alpha-L-like protein n=1 Tax=Labeo rohita... [more]
A0A1X7VFU3_AMPQE3.400e-624.86Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 46..222
e-value: 3.7E-20
score: 83.0
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 48..213
e-value: 1.1E-21
score: 77.8
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 48..217
score: 17.138571
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 41..226
e-value: 5.0E-27
score: 96.9
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 38..223
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..227
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availableCDDcd01450vWFA_subfamily_ECMcoord: 47..193
e-value: 1.67682E-16
score: 71.939

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_122_length_46896_cov_4.534024contigNODE_122_length_46896_cov_4.534024:3631..4314 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud8738.t1Gcaud8738.t1Gracilaria caudata M_176_S67 malemRNANODE_122_length_46896_cov_4.534024 3631..4314 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud8738.t1 ID=Gcaud8738.t1|Name=Gcaud8738.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=228bp
MKLLFRFLVSALLICVVRAVSLQPGGVVARSELRAASNFVRYRGCSINIC
FAIDGSGSMNHSEFDMQKNFIMDMVSIISYDNNASYAAVQYGESAYPILS
LTDDEQEFIWHVSSTPFQGDSRTSIAAGIEYCFFELSSAPSAVSKIVLVG
DGRHNAGRDPVEWARFFKSYFGHGGSLSAVSVGINDNQYMEDIAAAGGGH
AFAIDDFVELSYVIEDIIFDVCGAVSS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf