Gcaud7717.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud7717.t1
Unique NameGcaud7717.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length161
Homology
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BLAST of Gcaud7717.t1 vs. uniprot
Match: A0A2V3IKH0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKH0_9FLOR)

HSP 1 Score: 167 bits (423), Expect = 2.120e-50
Identity = 82/122 (67.21%), Postives = 95/122 (77.87%), Query Frame = 0 
Query:   25 PATKCLVRHARLLPKKTVVWIQGVVVWMGKDQIAIDDGSAIARIDLSNQTRRDIASEASTLNVGDYVLVVGETAGRYKGYRLGLRATTLRNLSSLGVMMESMWHLEVVDAFLTSEEKQYRGE 146
            PA KCLVRHAR L KK  VWIQGVVVW G++Q AIDDGS IAR+D+ N  +RD+AS   +L VGDYVL VGE  GRYKG+RLGLRATT+R L+  G MMESMWHLEV+DAFL  +EK+   E
Sbjct:   12 PARKCLVRHARFLGKKKTVWIQGVVVWTGENQFAIDDGSGIARVDVLNHRKRDLASCVLSLKVGDYVLAVGEVIGRYKGHRLGLRATTVRTLTQSGDMMESMWHLEVIDAFLYRKEKEREDE 133
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BLAST of Gcaud7717.t1 vs. uniprot
Match: R7Q995_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q995_CHOCR)

HSP 1 Score: 105 bits (263), Expect = 2.040e-26
Identity = 57/117 (48.72%), Postives = 77/117 (65.81%), Query Frame = 0 
Query:   25 PATKCLVRHARLLPKKTVVWIQGVVVWMGKDQIAIDDGSAIARIDLSNQTRRDIASEASTLNVGDYVLVVGETAGRYKGYRLGLRATTLRNLSSLGVMMESMWHLEVVDAFLTSEEK 141
            PA K L+R  R L K T +WIQGVVVW+ + Q+AIDDGS IAR  L    R +    +     G YV+VVG    R+KG+R+G++ATT+ +L+S   M E++W+LEV DAFL  +EK
Sbjct:    9 PAQKGLIRTVRCLAKGTSIWIQGVVVWVSETQLAIDDGSGIARAALQEYMRHE---SSLPFREGQYVMVVGIMLKRFKGHRMGMKATTICDLTS-SPMFETLWNLEVADAFLYGKEK 121
The following BLAST results are available for this feature:
BLAST of Gcaud7717.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IKH0_9FLOR2.120e-5067.21Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q995_CHOCR2.040e-2648.72Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032245RecQ-mediated genome instability protein 2PFAMPF16100RMI2coord: 39..134
e-value: 3.0E-12
score: 46.5
NoneNo IPR availableGENE3D2.40.50.140coord: 14..137
e-value: 2.5E-17
score: 64.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_982_length_15525_cov_4.305624contigNODE_982_length_15525_cov_4.305624:12835..13317 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7717.t1Gcaud7717.t1Gracilaria caudata M_176_S67 malemRNANODE_982_length_15525_cov_4.305624 12835..13317 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud7717.t1 ID=Gcaud7717.t1|Name=Gcaud7717.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=161bp
MSASGSRSASSSARTSLTSSEPSAPATKCLVRHARLLPKKTVVWIQGVVV
WMGKDQIAIDDGSAIARIDLSNQTRRDIASEASTLNVGDYVLVVGETAGR
YKGYRLGLRATTLRNLSSLGVMMESMWHLEVVDAFLTSEEKQYRGEDASD
VQIVHPPKPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032245RMI2