Gcaud7717.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud7717.t1
Unique NameGcaud7717.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_982_length_15525_cov_4.305624contigNODE_982_length_15525_cov_4.305624:12835..13317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008865432.1
PFAMsRMI2
Max annot lvl2759|Eukaryota
KEGG koko:K15365
KEGG Pathwayko03460,map03460
KEGG ModuleM00414
Evalue0.000326
EggNOG OGs2BDQ3@1|root,2S134@2759|Eukaryota
DescriptionRecQ-mediated genome instability protein 2
COG categoryS
BRITEko00000,ko00001,ko00002,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud7717Gcaud7717Gracilaria caudata M_176_S67 malegeneNODE_982_length_15525_cov_4.305624 12835..13317 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7717.t1.stop1Gcaud7717.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_982_length_15525_cov_4.305624 12835..12837 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7717.t1.CDS1Gcaud7717.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_982_length_15525_cov_4.305624 12835..13317 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7717.t1.exon1Gcaud7717.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_982_length_15525_cov_4.305624 12835..13317 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7717.t1.start1Gcaud7717.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_982_length_15525_cov_4.305624 13315..13317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud7717.t1Gcaud7717.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_982_length_15525_cov_4.305624 12835..13317 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud7717.t1 ID=Gcaud7717.t1|Name=Gcaud7717.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=161bp
MSASGSRSASSSARTSLTSSEPSAPATKCLVRHARLLPKKTVVWIQGVVV
WMGKDQIAIDDGSAIARIDLSNQTRRDIASEASTLNVGDYVLVVGETAGR
YKGYRLGLRATTLRNLSSLGVMMESMWHLEVVDAFLTSEEKQYRGEDASD
VQIVHPPKPV*
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spliced messenger RNA

>Gcaud7717.t1 ID=Gcaud7717.t1|Name=Gcaud7717.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_982_length_15525_cov_4.305624:12835..13317- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCGTCCGGCAGTAGATCCGCCTCTTCTTCTGCCAGAACAAGCCT
CACTTCCTCTGAACCGTCAGCCCCCGCAACCAAATGTCTTGTGCGTCATG
CGCGTCTACTTCCGAAGAAAACAGTGGTATGGATACAGGGTGTTGTAGTA
TGGATGGGAAAAGATCAAATCGCCATTGATGACGGCTCTGCAATTGCGCG
CATAGACCTCTCAAACCAAACCAGAAGAGATATTGCATCCGAGGCGTCCA
CTCTCAACGTTGGTGACTATGTGCTTGTGGTCGGCGAAACTGCCGGTCGA
TACAAAGGCTATCGGCTGGGATTACGCGCTACTACATTGAGAAACCTCTC
TTCATTGGGCGTTATGATGGAAAGCATGTGGCATCTTGAAGTCGTCGATG
CTTTTCTAACCTCGGAGGAGAAGCAATACAGAGGCGAAGATGCGAGTGAC
GTGCAGATAGTACACCCTCCCAAGCCTGTATAG
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protein sequence of Gcaud7717.t1

>Gcaud7717.t1 ID=Gcaud7717.t1|Name=Gcaud7717.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=161bp
MSASGSRSASSSARTSLTSSEPSAPATKCLVRHARLLPKKTVVWIQGVVV
WMGKDQIAIDDGSAIARIDLSNQTRRDIASEASTLNVGDYVLVVGETAGR
YKGYRLGLRATTLRNLSSLGVMMESMWHLEVVDAFLTSEEKQYRGEDASD
VQIVHPPKPV*
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mRNA from alignment at NODE_982_length_15525_cov_4.305624:12835..13317-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud7717.t1 ID=Gcaud7717.t1|Name=Gcaud7717.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=483bp|location=Sequence derived from alignment at NODE_982_length_15525_cov_4.305624:12835..13317- (Gracilaria caudata M_176_S67 male)
ATGTCTGCGTCCGGCAGTAGATCCGCCTCTTCTTCTGCCAGAACAAGCCT
CACTTCCTCTGAACCGTCAGCCCCCGCAACCAAATGTCTTGTGCGTCATG
CGCGTCTACTTCCGAAGAAAACAGTGGTATGGATACAGGGTGTTGTAGTA
TGGATGGGAAAAGATCAAATCGCCATTGATGACGGCTCTGCAATTGCGCG
CATAGACCTCTCAAACCAAACCAGAAGAGATATTGCATCCGAGGCGTCCA
CTCTCAACGTTGGTGACTATGTGCTTGTGGTCGGCGAAACTGCCGGTCGA
TACAAAGGCTATCGGCTGGGATTACGCGCTACTACATTGAGAAACCTCTC
TTCATTGGGCGTTATGATGGAAAGCATGTGGCATCTTGAAGTCGTCGATG
CTTTTCTAACCTCGGAGGAGAAGCAATACAGAGGCGAAGATGCGAGTGAC
GTGCAGATAGTACACCCTCCCAAGCCTGTATAG
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Coding sequence (CDS) from alignment at NODE_982_length_15525_cov_4.305624:12835..13317-

>Gcaud7717.t1 ID=Gcaud7717.t1|Name=Gcaud7717.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=483bp|location=Sequence derived from alignment at NODE_982_length_15525_cov_4.305624:12835..13317- (Gracilaria caudata M_176_S67 male)
ATGTCTGCGTCCGGCAGTAGATCCGCCTCTTCTTCTGCCAGAACAAGCCT
CACTTCCTCTGAACCGTCAGCCCCCGCAACCAAATGTCTTGTGCGTCATG
CGCGTCTACTTCCGAAGAAAACAGTGGTATGGATACAGGGTGTTGTAGTA
TGGATGGGAAAAGATCAAATCGCCATTGATGACGGCTCTGCAATTGCGCG
CATAGACCTCTCAAACCAAACCAGAAGAGATATTGCATCCGAGGCGTCCA
CTCTCAACGTTGGTGACTATGTGCTTGTGGTCGGCGAAACTGCCGGTCGA
TACAAAGGCTATCGGCTGGGATTACGCGCTACTACATTGAGAAACCTCTC
TTCATTGGGCGTTATGATGGAAAGCATGTGGCATCTTGAAGTCGTCGATG
CTTTTCTAACCTCGGAGGAGAAGCAATACAGAGGCGAAGATGCGAGTGAC
GTGCAGATAGTACACCCTCCCAAGCCTGTATAG
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