Gcaud739.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud739.t1
Unique Name	Gcaud739.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	395

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_978_length_15578_cov_4.427843	contig	NODE_978_length_15578_cov_4.427843:2625..3809 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud739	Gcaud739	Gracilaria caudata M_176_S67 male	gene	NODE_978_length_15578_cov_4.427843 2625..3809 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud739.t1.start1	Gcaud739.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_978_length_15578_cov_4.427843 2625..2627 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud739.t1.CDS1	Gcaud739.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_978_length_15578_cov_4.427843 2625..3809 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud739.t1.exon1	Gcaud739.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_978_length_15578_cov_4.427843 2625..3809 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud739.t1.stop1	Gcaud739.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_978_length_15578_cov_4.427843 3807..3809 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud739.t1	Gcaud739.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_978_length_15578_cov_4.427843 2625..3809 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_978_length_15578_cov_4.427843:2625..3809+
coding sequence from alignment at NODE_978_length_15578_cov_4.427843:2625..3809+

mRNA sequence

>Gcaud739.t1 ID=Gcaud739.t1|Name=Gcaud739.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=395bp
MSAHVSVSYGRNTVQIPLSDLSLRHVRAAATAALAPNCSSLVLAFETPSG
DQAAVSSDFALKLVLGADRSAGRLVLVSSSDLPTVDQCMTTVLRAVVDTA
TRSEAAAVFLALSGAWEVASRELTDCASMGSTGTPMQSAPPTRTPSPPPA
PMSNGASTRRRTQPLQMQSQFHSCLTRALEKKVPESSRVLADTACATWLE
KDDVFEGGVHGANESRALACFCMHTGVSCAACKVQTIQGTRYRSSALVNF
CERCRRSLPDASDTCFTVYEHPWEATEDYAQTCGDIFKAPRPPLCMGDVG
PRVMHLQYVLYKVGYLNVCDGRFRAGVFCRDTREAIRVFESEQRVGEQQQ
GVYTALTRSVLLGLFEEMEGRRAAARCAAMDGANRTRFRTALAA*

spliced messenger RNA

>Gcaud739.t1 ID=Gcaud739.t1|Name=Gcaud739.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1185bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:2625..3809+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGCGCACGTCTCGGTCTCGTACGGGCGCAACACCGTCCAAATCCC
GCTTTCGGACCTCTCGCTACGACATGTGAGGGCCGCCGCCACCGCCGCTT
TGGCGCCCAATTGTTCGTCGCTGGTGTTGGCGTTTGAGACGCCATCCGGT
GATCAGGCGGCCGTTTCTTCAGACTTTGCGCTCAAGCTTGTGTTGGGTGC
TGATCGTTCCGCTGGACGTCTTGTATTAGTATCTTCGTCGGATTTACCTA
CTGTTGATCAATGTATGACCACTGTTTTGCGCGCCGTCGTGGATACGGCC
ACGCGTAGTGAGGCTGCTGCGGTGTTTCTGGCGCTTTCTGGCGCGTGGGA
GGTGGCCTCGAGAGAGCTGACCGACTGCGCGTCTATGGGCAGCACTGGCA
CACCCATGCAGTCTGCTCCGCCCACACGAACACCGTCTCCACCGCCCGCG
CCAATGTCAAATGGAGCTAGCACTAGAAGAAGAACGCAGCCGTTGCAAAT
GCAAAGCCAGTTTCACTCCTGTCTGACGCGGGCGCTGGAAAAGAAAGTGC
CCGAGAGTTCGCGCGTGTTGGCCGACACAGCGTGCGCAACGTGGTTGGAG
AAGGACGATGTGTTTGAAGGTGGTGTGCATGGCGCAAACGAGTCGCGGGC
ATTGGCGTGTTTCTGCATGCACACAGGCGTGAGCTGTGCGGCGTGCAAGG
TACAAACGATTCAGGGAACGCGTTACCGAAGCAGCGCGTTGGTGAATTTT
TGCGAGAGGTGTCGAAGGTCTCTACCGGACGCGTCGGACACGTGCTTCAC
GGTATACGAGCATCCGTGGGAGGCTACGGAAGACTACGCACAGACGTGCG
GCGACATATTTAAAGCGCCGCGACCACCATTATGTATGGGTGATGTGGGT
CCGCGAGTGATGCACCTGCAGTACGTGCTGTACAAGGTGGGCTACCTCAA
CGTGTGCGATGGGCGCTTCCGCGCGGGCGTGTTTTGCAGGGACACCAGAG
AGGCGATTCGGGTGTTCGAGAGCGAGCAGCGCGTGGGCGAGCAGCAGCAG
GGCGTGTACACGGCGCTGACTCGCAGCGTGCTGCTGGGGCTGTTCGAGGA
GATGGAGGGgcgccgcgccgcggcgcgatgcgcggcgATGGACGGCGCGA
ACAGAACGCGCTTCCGCACTGCTCTGGCGGCGTAA

protein sequence of Gcaud739.t1

>Gcaud739.t1 ID=Gcaud739.t1|Name=Gcaud739.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=395bp
MSAHVSVSYGRNTVQIPLSDLSLRHVRAAATAALAPNCSSLVLAFETPSG
DQAAVSSDFALKLVLGADRSAGRLVLVSSSDLPTVDQCMTTVLRAVVDTA
TRSEAAAVFLALSGAWEVASRELTDCASMGSTGTPMQSAPPTRTPSPPPA
PMSNGASTRRRTQPLQMQSQFHSCLTRALEKKVPESSRVLADTACATWLE
KDDVFEGGVHGANESRALACFCMHTGVSCAACKVQTIQGTRYRSSALVNF
CERCRRSLPDASDTCFTVYEHPWEATEDYAQTCGDIFKAPRPPLCMGDVG
PRVMHLQYVLYKVGYLNVCDGRFRAGVFCRDTREAIRVFESEQRVGEQQQ
GVYTALTRSVLLGLFEEMEGRRAAARCAAMDGANRTRFRTALAA*

mRNA from alignment at NODE_978_length_15578_cov_4.427843:2625..3809+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud739.t1 ID=Gcaud739.t1|Name=Gcaud739.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1185bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:2625..3809+ (Gracilaria caudata M_176_S67 male)
ATGTCGGCGCACGTCTCGGTCTCGTACGGGCGCAACACCGTCCAAATCCC
GCTTTCGGACCTCTCGCTACGACATGTGAGGGCCGCCGCCACCGCCGCTT
TGGCGCCCAATTGTTCGTCGCTGGTGTTGGCGTTTGAGACGCCATCCGGT
GATCAGGCGGCCGTTTCTTCAGACTTTGCGCTCAAGCTTGTGTTGGGTGC
TGATCGTTCCGCTGGACGTCTTGTATTAGTATCTTCGTCGGATTTACCTA
CTGTTGATCAATGTATGACCACTGTTTTGCGCGCCGTCGTGGATACGGCC
ACGCGTAGTGAGGCTGCTGCGGTGTTTCTGGCGCTTTCTGGCGCGTGGGA
GGTGGCCTCGAGAGAGCTGACCGACTGCGCGTCTATGGGCAGCACTGGCA
CACCCATGCAGTCTGCTCCGCCCACACGAACACCGTCTCCACCGCCCGCG
CCAATGTCAAATGGAGCTAGCACTAGAAGAAGAACGCAGCCGTTGCAAAT
GCAAAGCCAGTTTCACTCCTGTCTGACGCGGGCGCTGGAAAAGAAAGTGC
CCGAGAGTTCGCGCGTGTTGGCCGACACAGCGTGCGCAACGTGGTTGGAG
AAGGACGATGTGTTTGAAGGTGGTGTGCATGGCGCAAACGAGTCGCGGGC
ATTGGCGTGTTTCTGCATGCACACAGGCGTGAGCTGTGCGGCGTGCAAGG
TACAAACGATTCAGGGAACGCGTTACCGAAGCAGCGCGTTGGTGAATTTT
TGCGAGAGGTGTCGAAGGTCTCTACCGGACGCGTCGGACACGTGCTTCAC
GGTATACGAGCATCCGTGGGAGGCTACGGAAGACTACGCACAGACGTGCG
GCGACATATTTAAAGCGCCGCGACCACCATTATGTATGGGTGATGTGGGT
CCGCGAGTGATGCACCTGCAGTACGTGCTGTACAAGGTGGGCTACCTCAA
CGTGTGCGATGGGCGCTTCCGCGCGGGCGTGTTTTGCAGGGACACCAGAG
AGGCGATTCGGGTGTTCGAGAGCGAGCAGCGCGTGGGCGAGCAGCAGCAG
GGCGTGTACACGGCGCTGACTCGCAGCGTGCTGCTGGGGCTGTTCGAGGA
GATGGAGGGgcgccgcgccgcggcgcgatgcgcggcgATGGACGGCGCGA
ACAGAACGCGCTTCCGCACTGCTCTGGCGGCGTAA

Coding sequence (CDS) from alignment at NODE_978_length_15578_cov_4.427843:2625..3809+

>Gcaud739.t1 ID=Gcaud739.t1|Name=Gcaud739.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1185bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:2625..3809+ (Gracilaria caudata M_176_S67 male)
ATGTCGGCGCACGTCTCGGTCTCGTACGGGCGCAACACCGTCCAAATCCC
GCTTTCGGACCTCTCGCTACGACATGTGAGGGCCGCCGCCACCGCCGCTT
TGGCGCCCAATTGTTCGTCGCTGGTGTTGGCGTTTGAGACGCCATCCGGT
GATCAGGCGGCCGTTTCTTCAGACTTTGCGCTCAAGCTTGTGTTGGGTGC
TGATCGTTCCGCTGGACGTCTTGTATTAGTATCTTCGTCGGATTTACCTA
CTGTTGATCAATGTATGACCACTGTTTTGCGCGCCGTCGTGGATACGGCC
ACGCGTAGTGAGGCTGCTGCGGTGTTTCTGGCGCTTTCTGGCGCGTGGGA
GGTGGCCTCGAGAGAGCTGACCGACTGCGCGTCTATGGGCAGCACTGGCA
CACCCATGCAGTCTGCTCCGCCCACACGAACACCGTCTCCACCGCCCGCG
CCAATGTCAAATGGAGCTAGCACTAGAAGAAGAACGCAGCCGTTGCAAAT
GCAAAGCCAGTTTCACTCCTGTCTGACGCGGGCGCTGGAAAAGAAAGTGC
CCGAGAGTTCGCGCGTGTTGGCCGACACAGCGTGCGCAACGTGGTTGGAG
AAGGACGATGTGTTTGAAGGTGGTGTGCATGGCGCAAACGAGTCGCGGGC
ATTGGCGTGTTTCTGCATGCACACAGGCGTGAGCTGTGCGGCGTGCAAGG
TACAAACGATTCAGGGAACGCGTTACCGAAGCAGCGCGTTGGTGAATTTT
TGCGAGAGGTGTCGAAGGTCTCTACCGGACGCGTCGGACACGTGCTTCAC
GGTATACGAGCATCCGTGGGAGGCTACGGAAGACTACGCACAGACGTGCG
GCGACATATTTAAAGCGCCGCGACCACCATTATGTATGGGTGATGTGGGT
CCGCGAGTGATGCACCTGCAGTACGTGCTGTACAAGGTGGGCTACCTCAA
CGTGTGCGATGGGCGCTTCCGCGCGGGCGTGTTTTGCAGGGACACCAGAG
AGGCGATTCGGGTGTTCGAGAGCGAGCAGCGCGTGGGCGAGCAGCAGCAG
GGCGTGTACACGGCGCTGACTCGCAGCGTGCTGCTGGGGCTGTTCGAGGA
GATGGAGGGgcgccgcgccgcggcgcgatgcgcggcgATGGACGGCGCGA
ACAGAACGCGCTTCCGCACTGCTCTGGCGGCGTAA