Gcaud739.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud739.t1
Unique NameGcaud739.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length395
Homology
BLAST of Gcaud739.t1 vs. uniprot
Match: A0A2V3J6Z4_9FLOR (ZZ-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Z4_9FLOR)

HSP 1 Score: 415 bits (1066), Expect = 1.180e-140
Identity = 241/407 (59.21%), Postives = 284/407 (69.78%), Query Frame = 0
Query:    2 SAHVSVSYGRNTVQIPLS-DLSLRHVRAAATAALAPNCSSLVLAFETPSGDQAAVSSDFALKLVLGADRSAGRLVLVSSSDLPTVDQCMTTVLRAVVDTATRSEAAAVFLALSGAWEVASRELTDCASMGSTGTPMQSAPPTRTPSPPPAPMSNGASTRRRTQPLQMQS-------------QFHSCLTRALEKKVPESSRVLADTACATWLEKDDVFEGGVHGANESRALACFCMHTGVSCAACKVQTIQGTRYRSSALVNFCERCRRSLPDASDTCFTVYEHPWEATEDYAQTCGDIFKAPRPPLCMGDVGPRVMHLQYVLYKVGYLNVCDGRFRAGVFCRDTREAIRVFESEQRVGEQQQGVYTALTRSVLLGLFEEMEGRRAAARCAAMDGANRTRFRTALAA 394
            S  V+VS+G  + QIPL+ D +L  +R+ A + LAP   SLVLAFETPS D+AAVS+DFA KLVLGA  SAGRLVLV + DLPTVDQCMTTVLRAVVDTATRSEAAAVFLALSG W  A+R+L+DC +      P+QSA P +TP+P        +S R R                        S LTR LE+ VP SSR LAD AC+      D      H A ESRA+A FC HTGVSC+AC VQ IQGTRYR S  VN CERCRR+LP+A+  CFTVY+HPWEA++DYA++C DI +AP PPL +GDVGPRVMHLQYVLYKVGYLNVC   FRAG+FC  TR+AI VFE + R+  Q  GVYTAL RSVLL LF+E+E R A  RC+ +  A+ TRFRTA+AA
Sbjct:    4 SPTVAVSFGTRSAQIPLTPDAALAPLRSRAISTLAPENPSLVLAFETPSNDRAAVSTDFAFKLVLGAHPSAGRLVLVPAPDLPTVDQCMTTVLRAVVDTATRSEAAAVFLALSGTWHAAARDLSDCPTP--LHPPVQSAAP-QTPAP--------SSCRPRASXXXXXXXXXXXXXXXXXALDLRSSLTRTLERAVPHSSRALADAACSLVQRASDPS----HAAAESRAVASFCTHTGVSCSACNVQAIQGTRYRCSPSVNLCERCRRALPEAASACFTVYDHPWEASDDYAESCADILRAPTPPLGIGDVGPRVMHLQYVLYKVGYLNVCCVAFRAGLFCSATRDAISVFEYDFRLSNQH-GVYTALIRSVLLSLFDEVERRYAGVRCSDIGRASNTRFRTAMAA 394          
BLAST of Gcaud739.t1 vs. uniprot
Match: A0A7S0BEW6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BEW6_9RHOD)

HSP 1 Score: 61.6 bits (148), Expect = 1.250e-6
Identity = 37/103 (35.92%), Postives = 53/103 (51.46%), Query Frame = 0
Query:  266 FTVYEHPWEATEDYAQTCGDIFKAPRPPLCMGDVGPRVMHLQYVLYKVGYLNVCDGRFRAGVFCRDTREAIRVFESEQRVGEQQQGVYTALTRSVLLGLFEEM 368
            F + E  WE  E +    G+I   P+ PL  GD GP+V+HLQ  L ++G +   + R+RAG F   T  AI+  + EQ +  +  G Y   T + L  L E M
Sbjct:  260 FRIREKQWEKEEGFE---GEI--VPKAPLKRGDEGPKVLHLQSCLIRLGKMKYENIRWRAGFFGPRTMAAIKSLQEEQNLQTEVAGSYDGTTAAALKTLVENM 357          
BLAST of Gcaud739.t1 vs. uniprot
Match: A0A7S2ZX05_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZX05_9RHOD)

HSP 1 Score: 60.5 bits (145), Expect = 3.130e-6
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 0
Query:  266 FTVYEHPWEATEDYAQTCGDIFKAPRPPLCMGDVGPRVMHLQYVLYKVGYLNVCDGRFRAGVFCRDTREAIRVFESEQRVGEQQQGVYTALTRSVLLGLFEEM 368
            F + E  WE  E +    G+I   P+ PL  GD GP+V+HLQ  L K+G +   + R+RAG F   T  AI+  + EQ +  +  G Y   T + L  L E M
Sbjct:  260 FRMREKQWEKEEGFE---GEI--VPKAPLKRGDEGPKVLHLQSCLIKLGKMKYENIRWRAGFFGPRTMAAIKDLQEEQNLKPEVAGSYDENTAAALKTLVENM 357          
The following BLAST results are available for this feature:
BLAST of Gcaud739.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J6Z4_9FLOR1.180e-14059.21ZZ-type domain-containing protein n=1 Tax=Gracilar... [more]
A0A7S0BEW6_9RHOD1.250e-635.92Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S2ZX05_9RHOD3.130e-636.89Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036366PGBD superfamilyGENE3D1.10.101.10coord: 288..364
e-value: 3.4E-5
score: 25.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..162
IPR036365PGBD-like superfamilySUPERFAMILY47090PGBD-likecoord: 290..361

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_978_length_15578_cov_4.427843contigNODE_978_length_15578_cov_4.427843:2625..3809 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud739.t1Gcaud739.t1Gracilaria caudata M_176_S67 malemRNANODE_978_length_15578_cov_4.427843 2625..3809 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud739.t1 ID=Gcaud739.t1|Name=Gcaud739.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=395bp
MSAHVSVSYGRNTVQIPLSDLSLRHVRAAATAALAPNCSSLVLAFETPSG
DQAAVSSDFALKLVLGADRSAGRLVLVSSSDLPTVDQCMTTVLRAVVDTA
TRSEAAAVFLALSGAWEVASRELTDCASMGSTGTPMQSAPPTRTPSPPPA
PMSNGASTRRRTQPLQMQSQFHSCLTRALEKKVPESSRVLADTACATWLE
KDDVFEGGVHGANESRALACFCMHTGVSCAACKVQTIQGTRYRSSALVNF
CERCRRSLPDASDTCFTVYEHPWEATEDYAQTCGDIFKAPRPPLCMGDVG
PRVMHLQYVLYKVGYLNVCDGRFRAGVFCRDTREAIRVFESEQRVGEQQQ
GVYTALTRSVLLGLFEEMEGRRAAARCAAMDGANRTRFRTALAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036366PGBDSf
IPR036365PGBD-like_sf