Gcaud742.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud742.t1
Unique NameGcaud742.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length236
Homology
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BLAST of Gcaud742.t1 vs. uniprot
Match: A0A2V3J6U5_9FLOR (GARS_N domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6U5_9FLOR)

HSP 1 Score: 285 bits (730), Expect = 1.280e-94
Identity = 139/187 (74.33%), Postives = 159/187 (85.03%), Query Frame = 0 
Query:   49 SDVKAYSIAETLRDSPHLNSTLLTAMRDYFGDDGREVQDYMKRPRTESGLPMFRCVIVGSGSRELQLAKTLVESGVIRGLYYCPDHDVACDIEMNKFAQSATVSAEKRPKDVVRFAQWCVADAVFIGPDRQHLLSKEAEGELAEAKITVFPHDVSAAIADGSLDVKECLLPLAEDEEDVPADEELVE 235
            +DV AYS+A+T++DSP LNSTL+ AMRDYFGDDGREVQDYMKRP  E+G PMFRCVIVGSG RELQLA+ L  S V+RGLYYCPDH   CDIEMNKFAQSATVSAE RP+DVVRFA+WC+ADAVFIGPDRQ  +S+E E ELA A ITVF HDVSAAIA+G++D KECLLPLA+ E D   +E+LVE
Sbjct:   42 TDVSAYSLADTVKDSPLLNSTLMNAMRDYFGDDGREVQDYMKRPLNENGEPMFRCVIVGSGERELQLARVLSGSDVMRGLYYCPDHAAVCDIEMNKFAQSATVSAETRPEDVVRFAKWCLADAVFIGPDRQRSISREVESELAHAGITVFQHDVSAAIAEGNMDAKECLLPLAQSESDTRTEEQLVE 228
The following BLAST results are available for this feature:
BLAST of Gcaud742.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J6U5_9FLOR1.280e-9474.33GARS_N domain-containing protein n=1 Tax=Gracilari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.20coord: 101..199
e-value: 1.2E-5
score: 27.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..52
IPR016185Pre-ATP-grasp domain superfamilySUPERFAMILY52440PreATP-grasp domaincoord: 101..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_978_length_15578_cov_4.427843contigNODE_978_length_15578_cov_4.427843:10815..11522 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud742.t1Gcaud742.t1Gracilaria caudata M_176_S67 malemRNANODE_978_length_15578_cov_4.427843 10815..11522 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud742.t1 ID=Gcaud742.t1|Name=Gcaud742.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MCAFVAAPPPRTPAHACAAQKSPKRSTRQKPRPSRPHSRPRRAQAETPSD
VKAYSIAETLRDSPHLNSTLLTAMRDYFGDDGREVQDYMKRPRTESGLPM
FRCVIVGSGSRELQLAKTLVESGVIRGLYYCPDHDVACDIEMNKFAQSAT
VSAEKRPKDVVRFAQWCVADAVFIGPDRQHLLSKEAEGELAEAKITVFPH
DVSAAIADGSLDVKECLLPLAEDEEDVPADEELVE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016185PreATP-grasp_dom_sf