Gcaud742.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud742.t1
Unique NameGcaud742.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length236
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_978_length_15578_cov_4.427843contigNODE_978_length_15578_cov_4.427843:10815..11522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud742Gcaud742Gracilaria caudata M_176_S67 malegeneNODE_978_length_15578_cov_4.427843 10815..11522 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud742.t1.start1Gcaud742.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_978_length_15578_cov_4.427843 10815..10817 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud742.t1.CDS1Gcaud742.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_978_length_15578_cov_4.427843 10815..11522 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud742.t1.exon1Gcaud742.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_978_length_15578_cov_4.427843 10815..11522 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud742.t1.stop1Gcaud742.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_978_length_15578_cov_4.427843 11520..11522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud742.t1Gcaud742.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_978_length_15578_cov_4.427843 10815..11522 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud742.t1 ID=Gcaud742.t1|Name=Gcaud742.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=236bp
MCAFVAAPPPRTPAHACAAQKSPKRSTRQKPRPSRPHSRPRRAQAETPSD
VKAYSIAETLRDSPHLNSTLLTAMRDYFGDDGREVQDYMKRPRTESGLPM
FRCVIVGSGSRELQLAKTLVESGVIRGLYYCPDHDVACDIEMNKFAQSAT
VSAEKRPKDVVRFAQWCVADAVFIGPDRQHLLSKEAEGELAEAKITVFPH
DVSAAIADGSLDVKECLLPLAEDEEDVPADEELVE*
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spliced messenger RNA

>Gcaud742.t1 ID=Gcaud742.t1|Name=Gcaud742.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:10815..11522+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCTTCGTGGCTGCACCGCCGCCACGCACACCCGCGCACGCCTG
CGCCGCGCAGAAGAGCCCGAAACGAAGCACGCGTCAGAAGCCACGTCCCA
GTCGTCCTCACTCCCGCCCGCGCCGCGCTCAGGCTGAAACGCCCTCCGAT
GTGAAGGCGTACAGCATTGCAGAAACTCTACGCGACTCGCCGCATCTCAA
CAGCACGCTACTCACCGCCATGCGAGACTACTTTGGCGACGACGGACGAG
AGGTGCAGGACTACATGAAACGGCCGCGCACGGAGAGTGGACTGCCGATG
TTCCGCTGCGTGATAGTGGGCTCTGGAAGTAGGGAGCTGCAGCTTGCAAA
GACTTTGGTTGAGAGTGGGGTGATTCGTGGCTTGTATTATTGTCCAGATC
ATGATGTAGCGTGTGACATTGAGATGAATAAGTTTGCGCAGTCTGCCACT
GTGAGCGCAGAGAAACGACCTAAGGACGTAGTTCGATTTGCGCAATGGTG
TGTGGCGGATGCGGTGTTCATCGGGCCTGATAGACAACACCTCCTTTCGA
AGGAGGCCGAGGGTGAGCTGGCAGAGGCTAAAATCACCGTGTTTCCGCAC
GACGTATCGGCGGCGATTGCGGACGGTAGCTTGGATGTGAAGGAATGCCT
GCTTCCGTTAGCAGAAGACGAGGAAGATGTGCCCGCGGATGAAGAGTTAG
TAGAATGA
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protein sequence of Gcaud742.t1

>Gcaud742.t1 ID=Gcaud742.t1|Name=Gcaud742.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=236bp
MCAFVAAPPPRTPAHACAAQKSPKRSTRQKPRPSRPHSRPRRAQAETPSD
VKAYSIAETLRDSPHLNSTLLTAMRDYFGDDGREVQDYMKRPRTESGLPM
FRCVIVGSGSRELQLAKTLVESGVIRGLYYCPDHDVACDIEMNKFAQSAT
VSAEKRPKDVVRFAQWCVADAVFIGPDRQHLLSKEAEGELAEAKITVFPH
DVSAAIADGSLDVKECLLPLAEDEEDVPADEELVE*
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mRNA from alignment at NODE_978_length_15578_cov_4.427843:10815..11522+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud742.t1 ID=Gcaud742.t1|Name=Gcaud742.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=708bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:10815..11522+ (Gracilaria caudata M_176_S67 male)
ATGTGCGCCTTCGTGGCTGCACCGCCGCCACGCACACCCGCGCACGCCTG
CGCCGCGCAGAAGAGCCCGAAACGAAGCACGCGTCAGAAGCCACGTCCCA
GTCGTCCTCACTCCCGCCCGCGCCGCGCTCAGGCTGAAACGCCCTCCGAT
GTGAAGGCGTACAGCATTGCAGAAACTCTACGCGACTCGCCGCATCTCAA
CAGCACGCTACTCACCGCCATGCGAGACTACTTTGGCGACGACGGACGAG
AGGTGCAGGACTACATGAAACGGCCGCGCACGGAGAGTGGACTGCCGATG
TTCCGCTGCGTGATAGTGGGCTCTGGAAGTAGGGAGCTGCAGCTTGCAAA
GACTTTGGTTGAGAGTGGGGTGATTCGTGGCTTGTATTATTGTCCAGATC
ATGATGTAGCGTGTGACATTGAGATGAATAAGTTTGCGCAGTCTGCCACT
GTGAGCGCAGAGAAACGACCTAAGGACGTAGTTCGATTTGCGCAATGGTG
TGTGGCGGATGCGGTGTTCATCGGGCCTGATAGACAACACCTCCTTTCGA
AGGAGGCCGAGGGTGAGCTGGCAGAGGCTAAAATCACCGTGTTTCCGCAC
GACGTATCGGCGGCGATTGCGGACGGTAGCTTGGATGTGAAGGAATGCCT
GCTTCCGTTAGCAGAAGACGAGGAAGATGTGCCCGCGGATGAAGAGTTAG
TAGAATGA
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Coding sequence (CDS) from alignment at NODE_978_length_15578_cov_4.427843:10815..11522+

>Gcaud742.t1 ID=Gcaud742.t1|Name=Gcaud742.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=708bp|location=Sequence derived from alignment at NODE_978_length_15578_cov_4.427843:10815..11522+ (Gracilaria caudata M_176_S67 male)
ATGTGCGCCTTCGTGGCTGCACCGCCGCCACGCACACCCGCGCACGCCTG
CGCCGCGCAGAAGAGCCCGAAACGAAGCACGCGTCAGAAGCCACGTCCCA
GTCGTCCTCACTCCCGCCCGCGCCGCGCTCAGGCTGAAACGCCCTCCGAT
GTGAAGGCGTACAGCATTGCAGAAACTCTACGCGACTCGCCGCATCTCAA
CAGCACGCTACTCACCGCCATGCGAGACTACTTTGGCGACGACGGACGAG
AGGTGCAGGACTACATGAAACGGCCGCGCACGGAGAGTGGACTGCCGATG
TTCCGCTGCGTGATAGTGGGCTCTGGAAGTAGGGAGCTGCAGCTTGCAAA
GACTTTGGTTGAGAGTGGGGTGATTCGTGGCTTGTATTATTGTCCAGATC
ATGATGTAGCGTGTGACATTGAGATGAATAAGTTTGCGCAGTCTGCCACT
GTGAGCGCAGAGAAACGACCTAAGGACGTAGTTCGATTTGCGCAATGGTG
TGTGGCGGATGCGGTGTTCATCGGGCCTGATAGACAACACCTCCTTTCGA
AGGAGGCCGAGGGTGAGCTGGCAGAGGCTAAAATCACCGTGTTTCCGCAC
GACGTATCGGCGGCGATTGCGGACGGTAGCTTGGATGTGAAGGAATGCCT
GCTTCCGTTAGCAGAAGACGAGGAAGATGTGCCCGCGGATGAAGAGTTAG
TAGAATGA
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