Gcaud1675.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1675.t1
Unique NameGcaud1675.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length551
Homology
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BLAST of Gcaud1675.t1 vs. uniprot
Match: A0A2V3IVV5_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVV5_9FLOR)

HSP 1 Score: 476 bits (1225), Expect = 4.730e-160
Identity = 249/490 (50.82%), Postives = 326/490 (66.53%), Query Frame = 0 
Query:   34 TLFAILSATQEPQPTNIPNTERNTSTPDGPLLRHVNNDLGPSGTLTILHRLRDAIGTAIQTWGFGPGRKHDIRHTRTSSPLPLVYRDTFSALVGDECEHSDMGCELLTKGFGTVGVVRYSFSSQRENIVGSSTQVQTACRCIGDECDKAILMRPVNISERGDDGNIHLTGRTSCIYQFYEGRFTDCHGETLRMQSKASSDVVRDG-YFVFEVDVSQYNQGIWKAVGHRGWDYGCLKDDFYSLPTVNLSTL-QGNISSGIHQYPLSRDEGIPSQNESMDCKPPPNVVYFRDEDENEGEECGSGFHFAMAGASFLGTQMDDMAIGEDKRTYLREVPPLLLFWEIMILICAATLGLYFAISAFLRFKKKGEWTGARILKLLGVQLMSLIFEGLPLYFALSFESAASQWTGRFAYMGATVALGRDVLLPQTEAYGNILVLTAVVGESRFMATQLVAVALFTAVINLAALVILGLVFWAFLVNRKRLADEKKMEE 521
            TL  +L        T +P    +    D PLLRHV + +G  GTLT+L RLRDAIGTA Q WGFGP   H + H+    PL +VYR+  SA +G   + +    EL+T+GFGTVGVVRY F S R N+ G STQV TACRC G +C +AIL+RPVNI+E G DG I LTGR SCIYQFY+G FTDCH ET++ Q K          Y+VFEV+ SQ+ +G WKA+G RGWDY C +DDF SLP VN+S +   NISS I  YPL +DEG    +    C+PPP V YFRDE E +G +C   + F++A  SF  +QMD +AIG    +Y  E+P LL FWE+++L CAA+LGLYFA ++  +++KKG W+  R +KL+ V LMS+ FE LPL+FAL FE+ A +W GRFAY+ AT+A+G+D +  Q  AYGNI+VLTA++GES+++ TQLV V  FTAV+++  +VIL  V +   V+ +  A   KM E
Sbjct:   22 TLLILLRTPSTASATPVPEVHISADK-DVPLLRHVKS-IGLEGTLTLLERLRDAIGTATQAWGFGPSLMHSVHHSLEHGPLRVVYRNAISAELG-ALKGAGRLKELMTRGFGTVGVVRYLFKSNRMNVAGESTQVMTACRCTGHDCTEAILLRPVNITETGPDGRIRLTGRKSCIYQFYKGTFTDCHSETIKTQDKRKGQSRHHSDYWVFEVNASQHGEGSWKALGFRGWDYACHEDDFKSLPRVNVSGIGMANISSEIEDYPLRKDEGPVPMDSRSGCRPPPGVQYFRDEREEDGAQCAETYEFSIAAGSFRASQMDQVAIGMKADSYTSELPALLRFWEVLVLSCAASLGLYFAHASLAKYRKKGFWSRLRTVKLVAVILMSVAFEALPLHFALGFEADAKKWAGRFAYLAATIAVGKDQVQVQESAYGNIVVLTALLGESQYIETQLVTVVAFTAVVDIGGVVILLAVVF---VHCRARASRGKMGE 505
The following BLAST results are available for this feature:
BLAST of Gcaud1675.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IVV5_9FLOR4.730e-16050.82Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 368..394
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 40..367
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 428..480
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 406..427
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 481..508
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 395..405
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 509..550
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..39
NoneNo IPR availableTMHMMTMhelixcoord: 370..392
NoneNo IPR availableTMHMMTMhelixcoord: 405..427
NoneNo IPR availableTMHMMTMhelixcoord: 486..508
NoneNo IPR availableTMHMMTMhelixcoord: 17..39

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_958_length_15721_cov_4.764299contigNODE_958_length_15721_cov_4.764299:6315..7967 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1675.t1Gcaud1675.t1Gracilaria caudata M_176_S67 malemRNANODE_958_length_15721_cov_4.764299 6315..7967 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1675.t1 ID=Gcaud1675.t1|Name=Gcaud1675.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=551bp
MRGLRLLCSNVCHVLKFVFVVFVFFAVGIFLFVTLFAILSATQEPQPTNI
PNTERNTSTPDGPLLRHVNNDLGPSGTLTILHRLRDAIGTAIQTWGFGPG
RKHDIRHTRTSSPLPLVYRDTFSALVGDECEHSDMGCELLTKGFGTVGVV
RYSFSSQRENIVGSSTQVQTACRCIGDECDKAILMRPVNISERGDDGNIH
LTGRTSCIYQFYEGRFTDCHGETLRMQSKASSDVVRDGYFVFEVDVSQYN
QGIWKAVGHRGWDYGCLKDDFYSLPTVNLSTLQGNISSGIHQYPLSRDEG
IPSQNESMDCKPPPNVVYFRDEDENEGEECGSGFHFAMAGASFLGTQMDD
MAIGEDKRTYLREVPPLLLFWEIMILICAATLGLYFAISAFLRFKKKGEW
TGARILKLLGVQLMSLIFEGLPLYFALSFESAASQWTGRFAYMGATVALG
RDVLLPQTEAYGNILVLTAVVGESRFMATQLVAVALFTAVINLAALVILG
LVFWAFLVNRKRLADEKKMEEGITGGLKVGVHPQLTTDFSETTSSSSFAV
*
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