Gcaud1675.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1675.t1
Unique Name	Gcaud1675.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	551

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_958_length_15721_cov_4.764299	contig	NODE_958_length_15721_cov_4.764299:6315..7967 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1675	Gcaud1675	Gracilaria caudata M_176_S67 male	gene	NODE_958_length_15721_cov_4.764299 6315..7967 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1675.t1.stop1	Gcaud1675.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_958_length_15721_cov_4.764299 6315..6317 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1675.t1.CDS1	Gcaud1675.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_958_length_15721_cov_4.764299 6315..7967 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1675.t1.exon1	Gcaud1675.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_958_length_15721_cov_4.764299 6315..7967 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1675.t1.start1	Gcaud1675.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_958_length_15721_cov_4.764299 7965..7967 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1675.t1	Gcaud1675.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_958_length_15721_cov_4.764299 6315..7967 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_958_length_15721_cov_4.764299:6315..7967-
coding sequence from alignment at NODE_958_length_15721_cov_4.764299:6315..7967-

mRNA sequence

>Gcaud1675.t1 ID=Gcaud1675.t1|Name=Gcaud1675.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=551bp
MRGLRLLCSNVCHVLKFVFVVFVFFAVGIFLFVTLFAILSATQEPQPTNI
PNTERNTSTPDGPLLRHVNNDLGPSGTLTILHRLRDAIGTAIQTWGFGPG
RKHDIRHTRTSSPLPLVYRDTFSALVGDECEHSDMGCELLTKGFGTVGVV
RYSFSSQRENIVGSSTQVQTACRCIGDECDKAILMRPVNISERGDDGNIH
LTGRTSCIYQFYEGRFTDCHGETLRMQSKASSDVVRDGYFVFEVDVSQYN
QGIWKAVGHRGWDYGCLKDDFYSLPTVNLSTLQGNISSGIHQYPLSRDEG
IPSQNESMDCKPPPNVVYFRDEDENEGEECGSGFHFAMAGASFLGTQMDD
MAIGEDKRTYLREVPPLLLFWEIMILICAATLGLYFAISAFLRFKKKGEW
TGARILKLLGVQLMSLIFEGLPLYFALSFESAASQWTGRFAYMGATVALG
RDVLLPQTEAYGNILVLTAVVGESRFMATQLVAVALFTAVINLAALVILG
LVFWAFLVNRKRLADEKKMEEGITGGLKVGVHPQLTTDFSETTSSSSFAV
*

spliced messenger RNA

>Gcaud1675.t1 ID=Gcaud1675.t1|Name=Gcaud1675.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at NODE_958_length_15721_cov_4.764299:6315..7967- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAGGTCTGCGGCTTCTGTGCTCGAATGTCTGCCATGTACTCAAGTT
CGTGTTCGTGGTGTTTGTGTTCTTTGCCGTCGGGATCTTTCTGTTCGTGA
CGCTTTTCGCCATCTTGTCGGCCACCCAAGAACCCCAACCTACTAATATT
CCGAACACCGAACGAAACACCTCTACTCCCGACGGACCATTACTTCGGCA
CGTGAACAACGATCTCGGACCCAGCGGGACGCTAACAATTCTCCACAGAC
TACGGGACGCTATTGGCACAGCTATACAAACATGGGGCTTTGGCCCCGGT
CGAAAGCATGACATCCGACATACACGAACAAGCTCTCCCCTGCCTCTTGT
TTACCGCGACACTTTTTCCGCGCTCGTAGGCGACGAATGCGAACACTCAG
ATATGGGGTGCGAACTTTTGACCAAGGGATTCGGCACTGTTGGTGTTGTG
CGCTACTCGTTTTCGTCACAGAGGGAAAACATTGTGGGAAGTTCCACGCA
GGTGCAGACTGCTTGTCGATGCATAGGTGACGAATGCGATAAAGCGATCC
TCATGCGCCCGGTGAACATTTCGGAACGTGGAGATGATGGGAACATTCAC
TTGACGGGAAGAACGTCTTGCATTTATCAGTTTTACGAAGGACGCTTTAC
GGATTGTCATGGAGAGACACTACGAATGCAGAGCAAGGCGTCGAGTGATG
TTGTACGTGATGGGTATTTCGTATTCGAGGTGGATGTCTCTCAGTACAAT
CAGGGAATCTGGAAAGCTGTGGGTCATCGTGGATGGGACTACGGCTGCCT
CAAAGACGACTTCTATTCACTTCCAACCGTAAATCTTTCTACACTGCAGG
GCAACATCAGCTCCGGTATTCATCAGTACCCATTGTCAAGAGATGAAGGC
ATTCCATCTCAGAATGAAAGCATGGACTGTAAGCCACCACCAAACGTGGT
ATACTTTCGAGATGAAGACGAAAACGAAGGCGAGGAATGCGGATCGGGGT
TTCATTTTGCGATGGCCGGAGCATCTTTTCTTGGCACTCAGATGGATGAC
ATGGCGATTGGAGAGGATAAACGGACATATCTACGGGAAGTTCCGCCACT
GCTGTTGTTCTGGGAGATCATGATACTGATTTGTGCTGCAACGCTAGGTC
TATACTTCGCCATTTCGGCGTTCCTGAGGTTCAAGAAGAAGGGTGAATGG
ACGGGTGCTCGCATATTGAAGTTGCTGGGGGTGCAACTGATGTCGCTGAT
ATTTGAAGGCTTGCCGCTGTACTTTGCGCTGTCGTTTGAAAGCGCGGCTT
CGCAGTGGACTGGGCGATTTGCGTACATGGGCGCGACGGTGGCGTTGGGG
CGGGACGTGCTGCTCCCGCAGACTGAGGCGTATGGAAACATTCTGGTGCT
TACGGCTGTGGTGGGCGAGTCACGCTTCATGGCCACGCAGTTGGTCGCTG
TGGCCTTGTTCACCGCGGTGATAAACTTGGCGGCGTTGGTGATTCTTGGA
CTTGTTTTTTGGGCCTTTCTGGTCAATCGGAAGCGACTTGCTGACGAAAA
GAAGATGGAGGAGGGGATCACAGGTGGGCTTAAGGTGGGCGTACATCCCC
AACTCACTACTGACTTCAGTGAGACGACCAGTTCGAGTAGTTTTGCAGTT
TGA

protein sequence of Gcaud1675.t1

>Gcaud1675.t1 ID=Gcaud1675.t1|Name=Gcaud1675.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=551bp
MRGLRLLCSNVCHVLKFVFVVFVFFAVGIFLFVTLFAILSATQEPQPTNI
PNTERNTSTPDGPLLRHVNNDLGPSGTLTILHRLRDAIGTAIQTWGFGPG
RKHDIRHTRTSSPLPLVYRDTFSALVGDECEHSDMGCELLTKGFGTVGVV
RYSFSSQRENIVGSSTQVQTACRCIGDECDKAILMRPVNISERGDDGNIH
LTGRTSCIYQFYEGRFTDCHGETLRMQSKASSDVVRDGYFVFEVDVSQYN
QGIWKAVGHRGWDYGCLKDDFYSLPTVNLSTLQGNISSGIHQYPLSRDEG
IPSQNESMDCKPPPNVVYFRDEDENEGEECGSGFHFAMAGASFLGTQMDD
MAIGEDKRTYLREVPPLLLFWEIMILICAATLGLYFAISAFLRFKKKGEW
TGARILKLLGVQLMSLIFEGLPLYFALSFESAASQWTGRFAYMGATVALG
RDVLLPQTEAYGNILVLTAVVGESRFMATQLVAVALFTAVINLAALVILG
LVFWAFLVNRKRLADEKKMEEGITGGLKVGVHPQLTTDFSETTSSSSFAV
*

mRNA from alignment at NODE_958_length_15721_cov_4.764299:6315..7967-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1675.t1 ID=Gcaud1675.t1|Name=Gcaud1675.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1653bp|location=Sequence derived from alignment at NODE_958_length_15721_cov_4.764299:6315..7967- (Gracilaria caudata M_176_S67 male)
ATGAGAGGTCTGCGGCTTCTGTGCTCGAATGTCTGCCATGTACTCAAGTT
CGTGTTCGTGGTGTTTGTGTTCTTTGCCGTCGGGATCTTTCTGTTCGTGA
CGCTTTTCGCCATCTTGTCGGCCACCCAAGAACCCCAACCTACTAATATT
CCGAACACCGAACGAAACACCTCTACTCCCGACGGACCATTACTTCGGCA
CGTGAACAACGATCTCGGACCCAGCGGGACGCTAACAATTCTCCACAGAC
TACGGGACGCTATTGGCACAGCTATACAAACATGGGGCTTTGGCCCCGGT
CGAAAGCATGACATCCGACATACACGAACAAGCTCTCCCCTGCCTCTTGT
TTACCGCGACACTTTTTCCGCGCTCGTAGGCGACGAATGCGAACACTCAG
ATATGGGGTGCGAACTTTTGACCAAGGGATTCGGCACTGTTGGTGTTGTG
CGCTACTCGTTTTCGTCACAGAGGGAAAACATTGTGGGAAGTTCCACGCA
GGTGCAGACTGCTTGTCGATGCATAGGTGACGAATGCGATAAAGCGATCC
TCATGCGCCCGGTGAACATTTCGGAACGTGGAGATGATGGGAACATTCAC
TTGACGGGAAGAACGTCTTGCATTTATCAGTTTTACGAAGGACGCTTTAC
GGATTGTCATGGAGAGACACTACGAATGCAGAGCAAGGCGTCGAGTGATG
TTGTACGTGATGGGTATTTCGTATTCGAGGTGGATGTCTCTCAGTACAAT
CAGGGAATCTGGAAAGCTGTGGGTCATCGTGGATGGGACTACGGCTGCCT
CAAAGACGACTTCTATTCACTTCCAACCGTAAATCTTTCTACACTGCAGG
GCAACATCAGCTCCGGTATTCATCAGTACCCATTGTCAAGAGATGAAGGC
ATTCCATCTCAGAATGAAAGCATGGACTGTAAGCCACCACCAAACGTGGT
ATACTTTCGAGATGAAGACGAAAACGAAGGCGAGGAATGCGGATCGGGGT
TTCATTTTGCGATGGCCGGAGCATCTTTTCTTGGCACTCAGATGGATGAC
ATGGCGATTGGAGAGGATAAACGGACATATCTACGGGAAGTTCCGCCACT
GCTGTTGTTCTGGGAGATCATGATACTGATTTGTGCTGCAACGCTAGGTC
TATACTTCGCCATTTCGGCGTTCCTGAGGTTCAAGAAGAAGGGTGAATGG
ACGGGTGCTCGCATATTGAAGTTGCTGGGGGTGCAACTGATGTCGCTGAT
ATTTGAAGGCTTGCCGCTGTACTTTGCGCTGTCGTTTGAAAGCGCGGCTT
CGCAGTGGACTGGGCGATTTGCGTACATGGGCGCGACGGTGGCGTTGGGG
CGGGACGTGCTGCTCCCGCAGACTGAGGCGTATGGAAACATTCTGGTGCT
TACGGCTGTGGTGGGCGAGTCACGCTTCATGGCCACGCAGTTGGTCGCTG
TGGCCTTGTTCACCGCGGTGATAAACTTGGCGGCGTTGGTGATTCTTGGA
CTTGTTTTTTGGGCCTTTCTGGTCAATCGGAAGCGACTTGCTGACGAAAA
GAAGATGGAGGAGGGGATCACAGGTGGGCTTAAGGTGGGCGTACATCCCC
AACTCACTACTGACTTCAGTGAGACGACCAGTTCGAGTAGTTTTGCAGTT
TGA

Coding sequence (CDS) from alignment at NODE_958_length_15721_cov_4.764299:6315..7967-

>Gcaud1675.t1 ID=Gcaud1675.t1|Name=Gcaud1675.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1653bp|location=Sequence derived from alignment at NODE_958_length_15721_cov_4.764299:6315..7967- (Gracilaria caudata M_176_S67 male)
ATGAGAGGTCTGCGGCTTCTGTGCTCGAATGTCTGCCATGTACTCAAGTT
CGTGTTCGTGGTGTTTGTGTTCTTTGCCGTCGGGATCTTTCTGTTCGTGA
CGCTTTTCGCCATCTTGTCGGCCACCCAAGAACCCCAACCTACTAATATT
CCGAACACCGAACGAAACACCTCTACTCCCGACGGACCATTACTTCGGCA
CGTGAACAACGATCTCGGACCCAGCGGGACGCTAACAATTCTCCACAGAC
TACGGGACGCTATTGGCACAGCTATACAAACATGGGGCTTTGGCCCCGGT
CGAAAGCATGACATCCGACATACACGAACAAGCTCTCCCCTGCCTCTTGT
TTACCGCGACACTTTTTCCGCGCTCGTAGGCGACGAATGCGAACACTCAG
ATATGGGGTGCGAACTTTTGACCAAGGGATTCGGCACTGTTGGTGTTGTG
CGCTACTCGTTTTCGTCACAGAGGGAAAACATTGTGGGAAGTTCCACGCA
GGTGCAGACTGCTTGTCGATGCATAGGTGACGAATGCGATAAAGCGATCC
TCATGCGCCCGGTGAACATTTCGGAACGTGGAGATGATGGGAACATTCAC
TTGACGGGAAGAACGTCTTGCATTTATCAGTTTTACGAAGGACGCTTTAC
GGATTGTCATGGAGAGACACTACGAATGCAGAGCAAGGCGTCGAGTGATG
TTGTACGTGATGGGTATTTCGTATTCGAGGTGGATGTCTCTCAGTACAAT
CAGGGAATCTGGAAAGCTGTGGGTCATCGTGGATGGGACTACGGCTGCCT
CAAAGACGACTTCTATTCACTTCCAACCGTAAATCTTTCTACACTGCAGG
GCAACATCAGCTCCGGTATTCATCAGTACCCATTGTCAAGAGATGAAGGC
ATTCCATCTCAGAATGAAAGCATGGACTGTAAGCCACCACCAAACGTGGT
ATACTTTCGAGATGAAGACGAAAACGAAGGCGAGGAATGCGGATCGGGGT
TTCATTTTGCGATGGCCGGAGCATCTTTTCTTGGCACTCAGATGGATGAC
ATGGCGATTGGAGAGGATAAACGGACATATCTACGGGAAGTTCCGCCACT
GCTGTTGTTCTGGGAGATCATGATACTGATTTGTGCTGCAACGCTAGGTC
TATACTTCGCCATTTCGGCGTTCCTGAGGTTCAAGAAGAAGGGTGAATGG
ACGGGTGCTCGCATATTGAAGTTGCTGGGGGTGCAACTGATGTCGCTGAT
ATTTGAAGGCTTGCCGCTGTACTTTGCGCTGTCGTTTGAAAGCGCGGCTT
CGCAGTGGACTGGGCGATTTGCGTACATGGGCGCGACGGTGGCGTTGGGG
CGGGACGTGCTGCTCCCGCAGACTGAGGCGTATGGAAACATTCTGGTGCT
TACGGCTGTGGTGGGCGAGTCACGCTTCATGGCCACGCAGTTGGTCGCTG
TGGCCTTGTTCACCGCGGTGATAAACTTGGCGGCGTTGGTGATTCTTGGA
CTTGTTTTTTGGGCCTTTCTGGTCAATCGGAAGCGACTTGCTGACGAAAA
GAAGATGGAGGAGGGGATCACAGGTGGGCTTAAGGTGGGCGTACATCCCC
AACTCACTACTGACTTCAGTGAGACGACCAGTTCGAGTAGTTTTGCAGTT
TGA