Gcaud1910.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1910.t1
Unique NameGcaud1910.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length164
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_927_length_16063_cov_4.587278contigNODE_927_length_16063_cov_4.587278:6192..6758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1910Gcaud1910Gracilaria caudata M_176_S67 malegeneNODE_927_length_16063_cov_4.587278 6192..6758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1910.t1Gcaud1910.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_927_length_16063_cov_4.587278 6192..6758 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1910.t1.stop1Gcaud1910.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_927_length_16063_cov_4.587278 6192..6194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1910.t1.CDS1Gcaud1910.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_927_length_16063_cov_4.587278 6192..6521 -
Gcaud1910.t1.CDS2Gcaud1910.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_927_length_16063_cov_4.587278 6597..6758 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1910.t1.exon1Gcaud1910.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_927_length_16063_cov_4.587278 6192..6521 -
Gcaud1910.t1.exon2Gcaud1910.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_927_length_16063_cov_4.587278 6597..6758 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1910.t1.intron1Gcaud1910.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_927_length_16063_cov_4.587278 6522..6596 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1910.t1.start1Gcaud1910.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_927_length_16063_cov_4.587278 6756..6758 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1910.t1 ID=Gcaud1910.t1|Name=Gcaud1910.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=164bp
MLARSHPYGNGGLDNRIGYTGYDPEAIEKEFQDAKRKMDAYIADPPEEIR
NIWMDLHGVSIVPIVERSIRRTLSDDHVYVIETGEESLLAVTAEKDKKIL
LTFEKEQEACRFEIHLTAEGQAAKRVRMSIEVAKSICNDGGMYFGIVPER
TLVSPMQFEPASK*
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spliced messenger RNA

>Gcaud1910.t1 ID=Gcaud1910.t1|Name=Gcaud1910.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=492bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:6192..6758- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCCAGATCTCATCCATATGGTAATGGGGGACTCGACAACCGAAT
AGGCTACACAGGATACGACCCTGAAGCTATTGAGAAAGAGTTTCAGGATG
CGAAGCGTAAGATGGACGCATATATTGCGGACCCACCTGAAGAAATCCGC
AACATATGGATGGATTTACACGGGGTTTCAATCGTCCCGATTGTAGAAAG
GTCAATTCGACGTACTCTATCAGATGACCATGTGTACGTGATCGAGACTG
GAGAAGAAAGTTTGTTGGCAGTTACAGCCGAAAAGGATAAAAAGATATTG
CTAACTTTTGAGAAGGAGCAAGAAGCATGCAGATTCGAAATCCATCTCAC
AGCAGAAGGACAGGCGGCGAAGCGGGTGAGGATGAGCATAGAGGTTGCTA
AAAGCATTTGCAATGACGGCGGTATGTATTTTGGTATAGTTCCGGAACGT
ACTTTAGTGTCACCAATGCAGTTTGAACCTGCTAGCAAGTAA
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protein sequence of Gcaud1910.t1

>Gcaud1910.t1 ID=Gcaud1910.t1|Name=Gcaud1910.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=164bp
MLARSHPYGNGGLDNRIGYTGYDPEAIEKEFQDAKRKMDAYIADPPEEIR
NIWMDLHGVSIVPIVERSIRRTLSDDHVYVIETGEESLLAVTAEKDKKIL
LTFEKEQEACRFEIHLTAEGQAAKRVRMSIEVAKSICNDGGMYFGIVPER
TLVSPMQFEPASK*
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mRNA from alignment at NODE_927_length_16063_cov_4.587278:6192..6758-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1910.t1 ID=Gcaud1910.t1|Name=Gcaud1910.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=567bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:6192..6758- (Gracilaria caudata M_176_S67 male)
ATGCTTGCCAGATCTCATCCATATGGTAATGGGGGACTCGACAACCGAAT
AGGCTACACAGGATACGACCCTGAAGCTATTGAGAAAGAGTTTCAGGATG
CGAAGCGTAAGATGGACGCATATATTGCGGACCCACCTGAAGAAATCCGC
AACATATGGATGGTGATAATGTCTGCGGATATTATTCAATGGGATAATAA
TTTGTTCAAAGCATCTGTGGAAAACGGATTCAAGTAGGATTTACACGGGG
TTTCAATCGTCCCGATTGTAGAAAGGTCAATTCGACGTACTCTATCAGAT
GACCATGTGTACGTGATCGAGACTGGAGAAGAAAGTTTGTTGGCAGTTAC
AGCCGAAAAGGATAAAAAGATATTGCTAACTTTTGAGAAGGAGCAAGAAG
CATGCAGATTCGAAATCCATCTCACAGCAGAAGGACAGGCGGCGAAGCGG
GTGAGGATGAGCATAGAGGTTGCTAAAAGCATTTGCAATGACGGCGGTAT
GTATTTTGGTATAGTTCCGGAACGTACTTTAGTGTCACCAATGCAGTTTG
AACCTGCTAGCAAGTAA
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Coding sequence (CDS) from alignment at NODE_927_length_16063_cov_4.587278:6192..6758-

>Gcaud1910.t1 ID=Gcaud1910.t1|Name=Gcaud1910.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=492bp|location=Sequence derived from alignment at NODE_927_length_16063_cov_4.587278:6192..6758- (Gracilaria caudata M_176_S67 male)
ATGCTTGCCAGATCTCATCCATATGGTAATGGGGGACTCGACAACCGAAT
AGGCTACACAGGATACGACCCTGAAGCTATTGAGAAAGAGTTTCAGGATG
CGAAGCGTAAGATGGACGCATATATTGCGGACCCACCTGAAGAAATCCGC
AACATATGGATGGATTTACACGGGGTTTCAATCGTCCCGATTGTAGAAAG
GTCAATTCGACGTACTCTATCAGATGACCATGTGTACGTGATCGAGACTG
GAGAAGAAAGTTTGTTGGCAGTTACAGCCGAAAAGGATAAAAAGATATTG
CTAACTTTTGAGAAGGAGCAAGAAGCATGCAGATTCGAAATCCATCTCAC
AGCAGAAGGACAGGCGGCGAAGCGGGTGAGGATGAGCATAGAGGTTGCTA
AAAGCATTTGCAATGACGGCGGTATGTATTTTGGTATAGTTCCGGAACGT
ACTTTAGTGTCACCAATGCAGTTTGAACCTGCTAGCAAGTAA
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