Gcaud3727.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3727.t1
Unique NameGcaud3727.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length146
Homology
BLAST of Gcaud3727.t1 vs. uniprot
Match: R7QHV4_CHOCR (DNA-directed RNA polymerase subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHV4_CHOCR)

HSP 1 Score: 75.9 bits (185), Expect = 3.140e-13
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 0
Query:    1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKGGLNSN---IDESIRLLYGAD-KKNTVLERIS 80
            +HYD TVRDSD++ILQFIYGDDGIDPSKS WL  KI+WQ++N + L+      G NS+   + ES      A  K++T  +R S
Sbjct:  893 LHYDYTVRDSDQTILQFIYGDDGIDPSKSRWLNTKIEWQLANQQCLQDP----GQNSSKRVVSESFEAAIDATVKRSTAGDRES 972          
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A1X6P4W4_PORUM (DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4W4_PORUM)

HSP 1 Score: 70.5 bits (171), Expect = 2.340e-11
Identity = 43/115 (37.39%), Postives = 60/115 (52.17%), Query Frame = 0
Query:    1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRST-------DIKGGLNSNIDESIRLLYGADK--------------------KNTVLERISPGALNRLG 88
            +HYD TVRDSD S+LQF+YG+DGID SKS WLT  + WQV+N  +L +          +  L+S +   +R +  A +                      T LER+SP A+ +LG
Sbjct:  745 VHYDHTVRDSDGSVLQFLYGEDGIDASKSAWLTRSVGWQVANHAALSADADPDEPPPAERPLSSALAADVRAVRKAPRALAKAAAKGKDPPAAAVAALSGTRLERLSPAAVAQLG 859          
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A7S3E721_9RHOD (DNA-directed RNA polymerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E721_9RHOD)

HSP 1 Score: 68.9 bits (167), Expect = 8.210e-11
Identity = 43/98 (43.88%), Postives = 53/98 (54.08%), Query Frame = 0
Query:    1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKG------GLNSNIDESIR--LLYGADKKNTVLERISPGALNRLGAV 90
            + YD TVRDSD SILQFIYGDDGIDPSKS WL  K  WQ  N + L     +G      GL+    +S+   +  G D+  + L+  S       GAV
Sbjct:  604 LKYDMTVRDSDDSILQFIYGDDGIDPSKSSWLLNKPGWQAMNSEELLGVSGEGAFENLPGLSDEQRKSVEHYVSRGMDEGGSTLDDASASDSGLHGAV 701          
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A7S2ZAA3_9RHOD (DNA-directed RNA polymerase subunit n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZAA3_9RHOD)

HSP 1 Score: 68.9 bits (167), Expect = 8.360e-11
Identity = 43/98 (43.88%), Postives = 53/98 (54.08%), Query Frame = 0
Query:    1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKG------GLNSNIDESIR--LLYGADKKNTVLERISPGALNRLGAV 90
            + YD TVRDSD SILQFIYGDDGIDPSKS WL  K  WQ  N + L     +G      GL+    +S+   +  G D+  + L+  S       GAV
Sbjct:  980 LKYDMTVRDSDDSILQFIYGDDGIDPSKSSWLLNKPGWQAMNSEELLGVSGEGAFENLPGLSDEQRKSVEHYVSRGMDEGGSTLDDASASDSGLHGAV 1077          
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A7S0BS33_9RHOD (DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BS33_9RHOD)

HSP 1 Score: 68.2 bits (165), Expect = 1.320e-10
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 0
Query:    1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKGGLNS 57
            + YD TVRDSD SILQFIYGDDGIDPSKS WL  K  WQ  N + L     +G   +
Sbjct:  296 LKYDLTVRDSDDSILQFIYGDDGIDPSKSSWLLSKPGWQAMNSEELLGVSGRGAFEN 352          
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A7S0BTI7_9RHOD (DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BTI7_9RHOD)

HSP 1 Score: 68.2 bits (165), Expect = 1.480e-10
Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 0
Query:    1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKGGLNS 57
            + YD TVRDSD SILQFIYGDDGIDPSKS WL  K  WQ  N + L     +G   +
Sbjct:  525 LKYDLTVRDSDDSILQFIYGDDGIDPSKSSWLLSKPGWQAMNSEELLGVSGRGAFEN 581          
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A5J4YT59_PORPP (DNA-directed RNA polymerase subunit n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YT59_PORPP)

HSP 1 Score: 67.4 bits (163), Expect = 2.900e-10
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 0
Query:    1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKGGLNSNIDESIRLLY-------------GADKKNT--VLERISPGALNRLGAV 90
            + YD TVRD+D  ++QF+YG+DG+DPSK  WL +++ WQ+ N+  LR     GG  ++     R ++              AD ++   +L+++ PG +N LG V
Sbjct: 1105 LEYDHTVRDADGQVIQFLYGEDGLDPSKVGWLLKEMQWQLDNVHQLRRLG-NGGTRTDTVSVERWMHEVPEGWKHQFASGAADSQSNHVLLDKLGPGGVNVLGGV 1208          
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A122IED8_PLABE (DNA-directed RNA polymerase subunit n=2 Tax=Plasmodium berghei TaxID=5821 RepID=A0A122IED8_PLABE)

HSP 1 Score: 57.4 bits (137), Expect = 8.950e-7
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 0
Query:    1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKGGLNSNIDESIRLLYGADK 71
            +HYDGTVR+ D SI+QF+YG+DGIDPSK+ +L         NI S    D+    N NI  S  L YG+DK
Sbjct: 1670 LHYDGTVRNEDNSIIQFLYGEDGIDPSKTAYL---------NIPS----DLIN--NYNISFSKYLNYGSDK 1725          
BLAST of Gcaud3727.t1 vs. uniprot
Match: Q2TUP5_AMBTC (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amborella trichopoda TaxID=13333 RepID=Q2TUP5_AMBTC)

HSP 1 Score: 57.0 bits (136), Expect = 1.070e-6
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0
Query:    1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRST----DIKGGLNSNIDESIRLLYGA--DKKNTVLERIS 80
            ++YD TVRDSD SI++FIYG+DG+D  K+ WLTE   +  +N K+L +      ++  L S  D  I+ L  A  +K N  +E++S
Sbjct:  412 VNYDHTVRDSDGSIIEFIYGEDGVDVVKTSWLTE-FKFLAANKKTLSARLGVHQLEDALPSEYDSYIKDLPDALEEKMNKFIEKLS 496          
BLAST of Gcaud3727.t1 vs. uniprot
Match: W1PP36_AMBTC (DNA-directed RNA polymerase subunit n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1PP36_AMBTC)

HSP 1 Score: 57.0 bits (136), Expect = 1.190e-6
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0
Query:    1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRST----DIKGGLNSNIDESIRLLYGA--DKKNTVLERIS 80
            ++YD TVRDSD SI++FIYG+DG+D  K+ WLTE   +  +N K+L +      ++  L S  D  I+ L  A  +K N  +E++S
Sbjct:  952 VNYDHTVRDSDGSIIEFIYGEDGVDVVKTSWLTE-FKFLAANKKTLSARLGVHQLEDALPSEYDSYIKDLPDALEEKMNKFIEKLS 1036          
The following BLAST results are available for this feature:
BLAST of Gcaud3727.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
R7QHV4_CHOCR3.140e-1351.19DNA-directed RNA polymerase subunit n=1 Tax=Chondr... [more]
A0A1X6P4W4_PORUM2.340e-1137.39DNA-directed RNA polymerase (Fragment) n=1 Tax=Por... [more]
A0A7S3E721_9RHOD8.210e-1143.88DNA-directed RNA polymerase n=1 Tax=Rhodosorus mar... [more]
A0A7S2ZAA3_9RHOD8.360e-1143.88DNA-directed RNA polymerase subunit n=2 Tax=Rhodos... [more]
A0A7S0BS33_9RHOD1.320e-1057.89DNA-directed RNA polymerase (Fragment) n=1 Tax=Rho... [more]
A0A7S0BTI7_9RHOD1.480e-1057.89DNA-directed RNA polymerase (Fragment) n=1 Tax=Rho... [more]
A0A5J4YT59_PORPP2.900e-1034.29DNA-directed RNA polymerase subunit n=1 Tax=Porphy... [more]
A0A122IED8_PLABE8.950e-749.30DNA-directed RNA polymerase subunit n=2 Tax=Plasmo... [more]
Q2TUP5_AMBTC1.070e-640.70DNA-directed RNA polymerase (Fragment) n=1 Tax=Amb... [more]
W1PP36_AMBTC1.190e-640.70DNA-directed RNA polymerase subunit n=2 Tax=Ambore... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 95..115
NoneNo IPR availableGENE3D6.20.50.80coord: 1..44
e-value: 9.4E-15
score: 55.8
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..38

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_884_length_16603_cov_4.726381contigNODE_884_length_16603_cov_4.726381:8926..9363 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3727.t1Gcaud3727.t1Gracilaria caudata M_176_S67 malemRNANODE_884_length_16603_cov_4.726381 8926..9363 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3727.t1 ID=Gcaud3727.t1|Name=Gcaud3727.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=146bp
MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTD
IKGGLNSNIDESIRLLYGADKKNTVLERISPGALNRLGAVLRLTAQRLKR
QKRSLEHSLVEYEDSWRRDIKRGQSKLAKLSVYSRHRELESLQPK*
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