Gcaud3727.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3727.t1
Unique NameGcaud3727.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length146
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_884_length_16603_cov_4.726381contigNODE_884_length_16603_cov_4.726381:8926..9363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog13333.ERN11762
PFAMsRNA_pol_Rpb1_1,RNA_pol_Rpb1_2,RNA_pol_Rpb1_3,RNA_pol_Rpb1_4,RNA_pol_Rpb1_5
Max annot lvl35493|Streptophyta
KEGG rclassRC02795
KEGG koko:K02999
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00182
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005911,GO:0006139,GO:0006351,GO:0006360,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009987,GO:0010467,GO:0016070,GO:0018130,GO:0019438,GO:0030054,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0055029,GO:0055044,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Evalue5.19e-07
EggNOG OGsCOG0086@1|root,KOG0262@2759|Eukaryota,37HDT@33090|Viridiplantae,3GEDQ@35493|Streptophyta
EC2.7.7.6
DescriptionDNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3727Gcaud3727Gracilaria caudata M_176_S67 malegeneNODE_884_length_16603_cov_4.726381 8926..9363 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3727.t1.stop1Gcaud3727.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_884_length_16603_cov_4.726381 8926..8928 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3727.t1.CDS1Gcaud3727.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_884_length_16603_cov_4.726381 8926..9363 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3727.t1.exon1Gcaud3727.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_884_length_16603_cov_4.726381 8926..9363 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3727.t1.start1Gcaud3727.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_884_length_16603_cov_4.726381 9361..9363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3727.t1Gcaud3727.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_884_length_16603_cov_4.726381 8926..9363 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3727.t1 ID=Gcaud3727.t1|Name=Gcaud3727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=146bp
MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTD
IKGGLNSNIDESIRLLYGADKKNTVLERISPGALNRLGAVLRLTAQRLKR
QKRSLEHSLVEYEDSWRRDIKRGQSKLAKLSVYSRHRELESLQPK*
back to top

spliced messenger RNA

>Gcaud3727.t1 ID=Gcaud3727.t1|Name=Gcaud3727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp|location=Sequence derived from alignment at NODE_884_length_16603_cov_4.726381:8926..9363- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATTATGATGGCACTGTAAGAGACAGTGACAAGTCCATCTTGCAGTT
CATTTACGGAGATGATGGAATAGACCCCTCAAAGTCATTGTGGCTCACCG
AGAAGATTGATTGGCAGGTGTCTAACATAAAAAGCTTGAGATCTACGGAT
ATCAAAGGTGGTTTGAATTCGAACATTGACGAGTCCATCCGTCTCCTATA
TGGGGCAGATAAGAAGAATACTGTTCTGGAAAGAATATCACCTGGGGCGC
TCAATCGACTGGGAGCAGTTCTGAGACTTACTGCTCAGCGATTAAAAAGG
CAGAAGAGAAGTCTGGAGCACAGCCTGGTGGAGTACGAAGATTCCTGGAG
AAGAGATATCAAGAGGGGGCAGTCGAAGCTGGCGAAGCTGTCTGTGTACT
CGCGGCACAGGGAATTGGAGAGCCTTCAACCCAAATGA
back to top

protein sequence of Gcaud3727.t1

>Gcaud3727.t1 ID=Gcaud3727.t1|Name=Gcaud3727.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=146bp
MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTD
IKGGLNSNIDESIRLLYGADKKNTVLERISPGALNRLGAVLRLTAQRLKR
QKRSLEHSLVEYEDSWRRDIKRGQSKLAKLSVYSRHRELESLQPK*
back to top

mRNA from alignment at NODE_884_length_16603_cov_4.726381:8926..9363-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3727.t1 ID=Gcaud3727.t1|Name=Gcaud3727.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=438bp|location=Sequence derived from alignment at NODE_884_length_16603_cov_4.726381:8926..9363- (Gracilaria caudata M_176_S67 male)
ATGCATTATGATGGCACTGTAAGAGACAGTGACAAGTCCATCTTGCAGTT
CATTTACGGAGATGATGGAATAGACCCCTCAAAGTCATTGTGGCTCACCG
AGAAGATTGATTGGCAGGTGTCTAACATAAAAAGCTTGAGATCTACGGAT
ATCAAAGGTGGTTTGAATTCGAACATTGACGAGTCCATCCGTCTCCTATA
TGGGGCAGATAAGAAGAATACTGTTCTGGAAAGAATATCACCTGGGGCGC
TCAATCGACTGGGAGCAGTTCTGAGACTTACTGCTCAGCGATTAAAAAGG
CAGAAGAGAAGTCTGGAGCACAGCCTGGTGGAGTACGAAGATTCCTGGAG
AAGAGATATCAAGAGGGGGCAGTCGAAGCTGGCGAAGCTGTCTGTGTACT
CGCGGCACAGGGAATTGGAGAGCCTTCAACCCAAATGA
back to top

Coding sequence (CDS) from alignment at NODE_884_length_16603_cov_4.726381:8926..9363-

>Gcaud3727.t1 ID=Gcaud3727.t1|Name=Gcaud3727.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=438bp|location=Sequence derived from alignment at NODE_884_length_16603_cov_4.726381:8926..9363- (Gracilaria caudata M_176_S67 male)
ATGCATTATGATGGCACTGTAAGAGACAGTGACAAGTCCATCTTGCAGTT
CATTTACGGAGATGATGGAATAGACCCCTCAAAGTCATTGTGGCTCACCG
AGAAGATTGATTGGCAGGTGTCTAACATAAAAAGCTTGAGATCTACGGAT
ATCAAAGGTGGTTTGAATTCGAACATTGACGAGTCCATCCGTCTCCTATA
TGGGGCAGATAAGAAGAATACTGTTCTGGAAAGAATATCACCTGGGGCGC
TCAATCGACTGGGAGCAGTTCTGAGACTTACTGCTCAGCGATTAAAAAGG
CAGAAGAGAAGTCTGGAGCACAGCCTGGTGGAGTACGAAGATTCCTGGAG
AAGAGATATCAAGAGGGGGCAGTCGAAGCTGGCGAAGCTGTCTGTGTACT
CGCGGCACAGGGAATTGGAGAGCCTTCAACCCAAATGA
back to top