Gcaud3727.t1 (polypeptide) Gracilaria caudata M_176_S67 male
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Overview
Homology
BLAST of Gcaud3727.t1 vs. uniprot
Match: R7QHV4_CHOCR (DNA-directed RNA polymerase subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHV4_CHOCR) HSP 1 Score: 75.9 bits (185), Expect = 3.140e-13 Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 0
Query: 1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKGGLNSN---IDESIRLLYGAD-KKNTVLERIS 80
+HYD TVRDSD++ILQFIYGDDGIDPSKS WL KI+WQ++N + L+ G NS+ + ES A K++T +R S
Sbjct: 893 LHYDYTVRDSDQTILQFIYGDDGIDPSKSRWLNTKIEWQLANQQCLQDP----GQNSSKRVVSESFEAAIDATVKRSTAGDRES 972
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A1X6P4W4_PORUM (DNA-directed RNA polymerase (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4W4_PORUM) HSP 1 Score: 70.5 bits (171), Expect = 2.340e-11 Identity = 43/115 (37.39%), Postives = 60/115 (52.17%), Query Frame = 0
Query: 1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRST-------DIKGGLNSNIDESIRLLYGADK--------------------KNTVLERISPGALNRLG 88
+HYD TVRDSD S+LQF+YG+DGID SKS WLT + WQV+N +L + + L+S + +R + A + T LER+SP A+ +LG
Sbjct: 745 VHYDHTVRDSDGSVLQFLYGEDGIDASKSAWLTRSVGWQVANHAALSADADPDEPPPAERPLSSALAADVRAVRKAPRALAKAAAKGKDPPAAAVAALSGTRLERLSPAAVAQLG 859
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A7S3E721_9RHOD (DNA-directed RNA polymerase n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3E721_9RHOD) HSP 1 Score: 68.9 bits (167), Expect = 8.210e-11 Identity = 43/98 (43.88%), Postives = 53/98 (54.08%), Query Frame = 0
Query: 1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKG------GLNSNIDESIR--LLYGADKKNTVLERISPGALNRLGAV 90
+ YD TVRDSD SILQFIYGDDGIDPSKS WL K WQ N + L +G GL+ +S+ + G D+ + L+ S GAV
Sbjct: 604 LKYDMTVRDSDDSILQFIYGDDGIDPSKSSWLLNKPGWQAMNSEELLGVSGEGAFENLPGLSDEQRKSVEHYVSRGMDEGGSTLDDASASDSGLHGAV 701
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A7S2ZAA3_9RHOD (DNA-directed RNA polymerase subunit n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZAA3_9RHOD) HSP 1 Score: 68.9 bits (167), Expect = 8.360e-11 Identity = 43/98 (43.88%), Postives = 53/98 (54.08%), Query Frame = 0
Query: 1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKG------GLNSNIDESIR--LLYGADKKNTVLERISPGALNRLGAV 90
+ YD TVRDSD SILQFIYGDDGIDPSKS WL K WQ N + L +G GL+ +S+ + G D+ + L+ S GAV
Sbjct: 980 LKYDMTVRDSDDSILQFIYGDDGIDPSKSSWLLNKPGWQAMNSEELLGVSGEGAFENLPGLSDEQRKSVEHYVSRGMDEGGSTLDDASASDSGLHGAV 1077
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A7S0BS33_9RHOD (DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BS33_9RHOD) HSP 1 Score: 68.2 bits (165), Expect = 1.320e-10 Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 0
Query: 1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKGGLNS 57
+ YD TVRDSD SILQFIYGDDGIDPSKS WL K WQ N + L +G +
Sbjct: 296 LKYDLTVRDSDDSILQFIYGDDGIDPSKSSWLLSKPGWQAMNSEELLGVSGRGAFEN 352
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A7S0BTI7_9RHOD (DNA-directed RNA polymerase (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BTI7_9RHOD) HSP 1 Score: 68.2 bits (165), Expect = 1.480e-10 Identity = 33/57 (57.89%), Postives = 37/57 (64.91%), Query Frame = 0
Query: 1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKGGLNS 57
+ YD TVRDSD SILQFIYGDDGIDPSKS WL K WQ N + L +G +
Sbjct: 525 LKYDLTVRDSDDSILQFIYGDDGIDPSKSSWLLSKPGWQAMNSEELLGVSGRGAFEN 581
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A5J4YT59_PORPP (DNA-directed RNA polymerase subunit n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YT59_PORPP) HSP 1 Score: 67.4 bits (163), Expect = 2.900e-10 Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 0
Query: 1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKGGLNSNIDESIRLLY-------------GADKKNT--VLERISPGALNRLGAV 90
+ YD TVRD+D ++QF+YG+DG+DPSK WL +++ WQ+ N+ LR GG ++ R ++ AD ++ +L+++ PG +N LG V
Sbjct: 1105 LEYDHTVRDADGQVIQFLYGEDGLDPSKVGWLLKEMQWQLDNVHQLRRLG-NGGTRTDTVSVERWMHEVPEGWKHQFASGAADSQSNHVLLDKLGPGGVNVLGGV 1208
BLAST of Gcaud3727.t1 vs. uniprot
Match: A0A122IED8_PLABE (DNA-directed RNA polymerase subunit n=2 Tax=Plasmodium berghei TaxID=5821 RepID=A0A122IED8_PLABE) HSP 1 Score: 57.4 bits (137), Expect = 8.950e-7 Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 0
Query: 1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRSTDIKGGLNSNIDESIRLLYGADK 71
+HYDGTVR+ D SI+QF+YG+DGIDPSK+ +L NI S D+ N NI S L YG+DK
Sbjct: 1670 LHYDGTVRNEDNSIIQFLYGEDGIDPSKTAYL---------NIPS----DLIN--NYNISFSKYLNYGSDK 1725
BLAST of Gcaud3727.t1 vs. uniprot
Match: Q2TUP5_AMBTC (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amborella trichopoda TaxID=13333 RepID=Q2TUP5_AMBTC) HSP 1 Score: 57.0 bits (136), Expect = 1.070e-6 Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0
Query: 1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRST----DIKGGLNSNIDESIRLLYGA--DKKNTVLERIS 80
++YD TVRDSD SI++FIYG+DG+D K+ WLTE + +N K+L + ++ L S D I+ L A +K N +E++S
Sbjct: 412 VNYDHTVRDSDGSIIEFIYGEDGVDVVKTSWLTE-FKFLAANKKTLSARLGVHQLEDALPSEYDSYIKDLPDALEEKMNKFIEKLS 496
BLAST of Gcaud3727.t1 vs. uniprot
Match: W1PP36_AMBTC (DNA-directed RNA polymerase subunit n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1PP36_AMBTC) HSP 1 Score: 57.0 bits (136), Expect = 1.190e-6 Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0
Query: 1 MHYDGTVRDSDKSILQFIYGDDGIDPSKSLWLTEKIDWQVSNIKSLRST----DIKGGLNSNIDESIRLLYGA--DKKNTVLERIS 80
++YD TVRDSD SI++FIYG+DG+D K+ WLTE + +N K+L + ++ L S D I+ L A +K N +E++S
Sbjct: 952 VNYDHTVRDSDGSIIEFIYGEDGVDVVKTSWLTE-FKFLAANKKTLSARLGVHQLEDALPSEYDSYIKDLPDALEEKMNKFIEKLS 1036 The following BLAST results are available for this feature:
BLAST of Gcaud3727.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gcaud3727.t1 ID=Gcaud3727.t1|Name=Gcaud3727.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=146bpback to top |