Gcaud1686.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1686.t1
Unique NameGcaud1686.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length115
Homology
BLAST of Gcaud1686.t1 vs. uniprot
Match: PSB28_GRATL (Photosystem II reaction center Psb28 protein n=26 Tax=Gracilariaceae TaxID=31469 RepID=PSB28_GRATL)

HSP 1 Score: 219 bits (557), Expect = 4.340e-72
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = 0
Query:    1 MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGDITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFMEKYANRNKLSFTKA 113
            MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDIL+SGME+KGDITGMYL+DDEGELMTRDVSAKF+NGKPQA+EAIYIIK+PQEWDRFMRFMEKYAN NKLSFTKA
Sbjct:    1 MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILKSGMEDKGDITGMYLKDDEGELMTRDVSAKFINGKPQAVEAIYIIKSPQEWDRFMRFMEKYANENKLSFTKA 113          
BLAST of Gcaud1686.t1 vs. uniprot
Match: A0A345U974_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Agarophyton vermiculophyllum TaxID=2608709 RepID=A0A345U974_9FLOR)

HSP 1 Score: 208 bits (530), Expect = 5.700e-68
Identity = 100/113 (88.50%), Postives = 111/113 (98.23%), Query Frame = 0
Query:    1 MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGDITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFMEKYANRNKLSFTKA 113
            MAVIQFI+GINETVVADVSLTRSRDGS+GTATFRFN+PDIL+S M++KGDITGMYL+DDEGELMTRDVSAKF+NGKPQAIEA+Y+IK+PQEWDRFMRFMEKYAN NKLSFTKA
Sbjct:    1 MAVIQFIRGINETVVADVSLTRSRDGSQGTATFRFNSPDILQSSMQDKGDITGMYLKDDEGELMTRDVSAKFINGKPQAIEALYLIKSPQEWDRFMRFMEKYANDNKLSFTKA 113          
BLAST of Gcaud1686.t1 vs. uniprot
Match: A0A0C5DHH8_GRALE (Photosystem II reaction center Psb28 protein n=6 Tax=Gracilariopsis TaxID=2781 RepID=A0A0C5DHH8_GRALE)

HSP 1 Score: 204 bits (518), Expect = 3.850e-66
Identity = 98/113 (86.73%), Postives = 109/113 (96.46%), Query Frame = 0
Query:    1 MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGDITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFMEKYANRNKLSFTKA 113
            MAVIQFIKGINETV+ADVSLTRS+DGS GTATFRFNNPDIL+S M+ KGDITGMYL+DDEGEL+TRDVSAKFVNGKPQAI +IYIIK+PQEWDRFMRFME+YAN+N+LSFTKA
Sbjct:    1 MAVIQFIKGINETVIADVSLTRSKDGSTGTATFRFNNPDILKSVMQEKGDITGMYLKDDEGELVTRDVSAKFVNGKPQAITSIYIIKSPQEWDRFMRFMERYANKNQLSFTKA 113          
BLAST of Gcaud1686.t1 vs. uniprot
Match: A0A345UAZ2_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Melanthalia intermedia TaxID=172989 RepID=A0A345UAZ2_9FLOR)

HSP 1 Score: 203 bits (517), Expect = 5.480e-66
Identity = 98/113 (86.73%), Postives = 110/113 (97.35%), Query Frame = 0
Query:    1 MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGDITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFMEKYANRNKLSFTKA 113
            MA IQFIKGINETV+A+VSLTRSRDGSKGTATFRF+NPDIL+SGME+KGDITGMYL+D+EGEL+TRDVSAKFVNGKP+AIEA+YIIK PQEWDRFMRFME+YAN N+LSFTKA
Sbjct:    1 MASIQFIKGINETVIANVSLTRSRDGSKGTATFRFDNPDILKSGMEDKGDITGMYLKDNEGELVTRDVSAKFVNGKPRAIEAVYIIKTPQEWDRFMRFMEQYANDNELSFTKA 113          
BLAST of Gcaud1686.t1 vs. uniprot
Match: A0A1C9CB89_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Ahnfeltia plicata TaxID=28023 RepID=A0A1C9CB89_9FLOR)

HSP 1 Score: 194 bits (494), Expect = 1.760e-62
Identity = 92/113 (81.42%), Postives = 105/113 (92.92%), Query Frame = 0
Query:    1 MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGDITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFMEKYANRNKLSFTKA 113
            MAVIQFI+GINET+V DV LTRSRDGS GTATFRFNNPDIL S ME+KGDITGMYL+D+EGEL+TRDV+AKF+NGKPQAIE++YIIK+P +WDRFMRFME+YAN N LSFTKA
Sbjct:    1 MAVIQFIQGINETIVPDVKLTRSRDGSTGTATFRFNNPDILMSKMESKGDITGMYLKDEEGELVTRDVNAKFINGKPQAIESVYIIKSPDDWDRFMRFMERYANDNNLSFTKA 113          
BLAST of Gcaud1686.t1 vs. uniprot
Match: A0A1G4NXW4_9FLOR (Photosystem II reaction center Psb28 protein n=2 Tax=Nemaliales TaxID=2807 RepID=A0A1G4NXW4_9FLOR)

HSP 1 Score: 192 bits (488), Expect = 1.500e-61
Identity = 92/113 (81.42%), Postives = 101/113 (89.38%), Query Frame = 0
Query:    1 MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGDITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFMEKYANRNKLSFTKA 113
            MAVIQFIKGINE+VV DV LTRSRDGS GTATFRF NP IL S MENKGDITGMYL D+EGEL+TRDV+AKF+NG+PQAIE +YIIKNP+ WDRFMRFME+YAN N LSFTKA
Sbjct:    1 MAVIQFIKGINESVVPDVKLTRSRDGSTGTATFRFTNPTILDSSMENKGDITGMYLLDEEGELITRDVNAKFINGRPQAIECVYIIKNPENWDRFMRFMERYANENSLSFTKA 113          
BLAST of Gcaud1686.t1 vs. uniprot
Match: A0A6M3WWC8_PTELU (Photosystem II reaction center Psb28 protein n=1 Tax=Pterocladia lucida TaxID=31408 RepID=A0A6M3WWC8_PTELU)

HSP 1 Score: 192 bits (487), Expect = 2.130e-61
Identity = 89/113 (78.76%), Postives = 107/113 (94.69%), Query Frame = 0
Query:    1 MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGDITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFMEKYANRNKLSFTKA 113
            MA+IQFI+GINETV+ DV LTRSRDGS GTATFRFNNPDILR  ME+KGDITGMYL+DDEG+++T+DV+AKF+NGKP+AIEAIYIIK+P++WDRFMRFM+KYA+ N+LSFTKA
Sbjct:    1 MALIQFIQGINETVIPDVKLTRSRDGSTGTATFRFNNPDILRPDMEDKGDITGMYLKDDEGDMITKDVNAKFINGKPEAIEAIYIIKSPRDWDRFMRFMDKYADDNELSFTKA 113          
BLAST of Gcaud1686.t1 vs. uniprot
Match: A0A1Z1MKN9_SPYFI (Photosystem II reaction center Psb28 protein n=1 Tax=Spyridia filamentosa TaxID=196632 RepID=A0A1Z1MKN9_SPYFI)

HSP 1 Score: 191 bits (486), Expect = 2.920e-61
Identity = 92/114 (80.70%), Postives = 101/114 (88.60%), Query Frame = 0
Query:    1 MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGDITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFMEKYANRNKLSFTKAN 114
            MA IQFIKGI ET VADVSLTRS+DGS GTA FRFNNPDIL+SGME KGDI GMYL D+EGELMT DVSAKF+NGKPQ IE +YIIK+P+EWDRFMRFME+YAN N LSFTKA+
Sbjct:    1 MAFIQFIKGIKETTVADVSLTRSKDGSTGTAKFRFNNPDILQSGMEKKGDIKGMYLNDEEGELMTTDVSAKFINGKPQGIECLYIIKSPEEWDRFMRFMERYANINNLSFTKAS 114          
BLAST of Gcaud1686.t1 vs. uniprot
Match: A0A6H1U8S6_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Caulacanthus okamurae TaxID=152008 RepID=A0A6H1U8S6_9FLOR)

HSP 1 Score: 190 bits (482), Expect = 1.310e-60
Identity = 88/114 (77.19%), Postives = 105/114 (92.11%), Query Frame = 0
Query:    1 MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGDITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFMEKYANRNKLSFTKAN 114
            MA IQFI+GINETVVADV LTRS+DGS GTATFRFNNPDIL+S M++KGDITGMYL D+EG ++T++V+AKF+NGKPQAIEA YIIK+P++WDRFMRFME+Y N N+LSFTKAN
Sbjct:    4 MANIQFIQGINETVVADVKLTRSKDGSNGTATFRFNNPDILKSDMQDKGDITGMYLNDEEGSMVTKEVNAKFINGKPQAIEATYIIKSPKDWDRFMRFMERYGNENELSFTKAN 117          
BLAST of Gcaud1686.t1 vs. uniprot
Match: A0A141SD41_9FLOR (Photosystem II reaction center Psb28 protein n=1 Tax=Sporolithon durum TaxID=48970 RepID=A0A141SD41_9FLOR)

HSP 1 Score: 189 bits (481), Expect = 1.640e-60
Identity = 89/113 (78.76%), Postives = 103/113 (91.15%), Query Frame = 0
Query:    1 MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGDITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFMEKYANRNKLSFTKA 113
            MA IQFI+GINE VV D+ LTRSRDGS GTATFRFN+PDIL S M+NKGDITGMYL+D+EGEL+TRDV+AKFVNGKP+AIE++YIIKNP+ WDRFMRFME+Y+N N LSFTKA
Sbjct:    1 MATIQFIRGINERVVPDIKLTRSRDGSTGTATFRFNSPDILMSNMKNKGDITGMYLKDEEGELVTRDVNAKFVNGKPKAIESVYIIKNPENWDRFMRFMERYSNDNDLSFTKA 113          
The following BLAST results are available for this feature:
BLAST of Gcaud1686.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSB28_GRATL4.340e-7293.81Photosystem II reaction center Psb28 protein n=26 ... [more]
A0A345U974_9FLOR5.700e-6888.50Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A0C5DHH8_GRALE3.850e-6686.73Photosystem II reaction center Psb28 protein n=6 T... [more]
A0A345UAZ2_9FLOR5.480e-6686.73Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A1C9CB89_9FLOR1.760e-6281.42Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A1G4NXW4_9FLOR1.500e-6181.42Photosystem II reaction center Psb28 protein n=2 T... [more]
A0A6M3WWC8_PTELU2.130e-6178.76Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A1Z1MKN9_SPYFI2.920e-6180.70Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A6H1U8S6_9FLOR1.310e-6077.19Photosystem II reaction center Psb28 protein n=1 T... [more]
A0A141SD41_9FLOR1.640e-6078.76Photosystem II reaction center Psb28 protein n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038676Photosystem II Psb28, class 1 superfamilyGENE3D2.40.30.220Photosystem II Psb28coord: 1..114
e-value: 2.5E-50
score: 171.4
IPR005610Photosystem II Psb28, class 1TIGRFAMTIGR03047TIGR03047coord: 4..112
e-value: 1.0E-48
score: 162.1
IPR005610Photosystem II Psb28, class 1PFAMPF03912Psb28coord: 4..110
e-value: 2.4E-43
score: 146.7
IPR005610Photosystem II Psb28, class 1PANTHERPTHR34963FAMILY NOT NAMEDcoord: 1..113
IPR005610Photosystem II Psb28, class 1HAMAPMF_01370PSII_Psb28coord: 1..111
score: 32.059391

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_857_length_16974_cov_176.431973contigNODE_857_length_16974_cov_176.431973:12202..12546 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1686.t1Gcaud1686.t1Gracilaria caudata M_176_S67 malemRNANODE_857_length_16974_cov_176.431973 12202..12546 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1686.t1 ID=Gcaud1686.t1|Name=Gcaud1686.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=115bp
MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGD
ITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFME
KYANRNKLSFTKAN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038676Psb28_c1_sf
IPR005610PSII_Psb28_class-1