Gcaud1686.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1686.t1
Unique NameGcaud1686.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_857_length_16974_cov_176.431973contigNODE_857_length_16974_cov_176.431973:12202..12546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.AAC35603
Preferred namepsbW
PFAMsPsb28
Max annot lvl2759|Eukaryota
KEGG koko:K08903
KEGG Pathwayko00195,ko01100,map00195,map01100
Evalue3.62e-51
EggNOG OGs2AR4E@1|root,2RMFI@2759|Eukaryota
Descriptionphotosynthesis
COG categoryS
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1686Gcaud1686Gracilaria caudata M_176_S67 malegeneNODE_857_length_16974_cov_176.431973 12202..12546 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1686.t1.start1Gcaud1686.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_857_length_16974_cov_176.431973 12202..12204 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1686.t1.CDS1Gcaud1686.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_857_length_16974_cov_176.431973 12202..12546 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1686.t1.exon1Gcaud1686.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_857_length_16974_cov_176.431973 12202..12546 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1686.t1.stop1Gcaud1686.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_857_length_16974_cov_176.431973 12544..12546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1686.t1Gcaud1686.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_857_length_16974_cov_176.431973 12202..12546 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1686.t1 ID=Gcaud1686.t1|Name=Gcaud1686.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=115bp
MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGD
ITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFME
KYANRNKLSFTKAN*
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spliced messenger RNA

>Gcaud1686.t1 ID=Gcaud1686.t1|Name=Gcaud1686.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=345bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:12202..12546+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTGTTATTCAGTTTATTAAAGGAATTAATGAAACAGTTGTTGCTGA
TGTTTCTTTAACACGTTCCAGAGATGGAAGTAAAGGTACGGCAACATTTA
GATTTAATAATCCAGATATTTTAAGGTCTGGTATGGAAAATAAAGGAGAT
ATTACAGGCATGTACTTACAAGATGATGAGGGTGAACTAATGACTAGGGA
TGTGAGTGCTAAATTTGTTAATGGCAAACCTCAAGCAATAGAAGCTATAT
ATATAATAAAAAATCCACAAGAATGGGATCGTTTTATGCGATTTATGGAA
AAATATGCTAATAGAAATAAGCTTTCTTTTACAAAAGCTAATTGA
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protein sequence of Gcaud1686.t1

>Gcaud1686.t1 ID=Gcaud1686.t1|Name=Gcaud1686.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=115bp
MAVIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILRSGMENKGD
ITGMYLQDDEGELMTRDVSAKFVNGKPQAIEAIYIIKNPQEWDRFMRFME
KYANRNKLSFTKAN*
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mRNA from alignment at NODE_857_length_16974_cov_176.431973:12202..12546+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1686.t1 ID=Gcaud1686.t1|Name=Gcaud1686.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=345bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:12202..12546+ (Gracilaria caudata M_176_S67 male)
ATGGCTGTTATTCAGTTTATTAAAGGAATTAATGAAACAGTTGTTGCTGA
TGTTTCTTTAACACGTTCCAGAGATGGAAGTAAAGGTACGGCAACATTTA
GATTTAATAATCCAGATATTTTAAGGTCTGGTATGGAAAATAAAGGAGAT
ATTACAGGCATGTACTTACAAGATGATGAGGGTGAACTAATGACTAGGGA
TGTGAGTGCTAAATTTGTTAATGGCAAACCTCAAGCAATAGAAGCTATAT
ATATAATAAAAAATCCACAAGAATGGGATCGTTTTATGCGATTTATGGAA
AAATATGCTAATAGAAATAAGCTTTCTTTTACAAAAGCTAATTGA
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Coding sequence (CDS) from alignment at NODE_857_length_16974_cov_176.431973:12202..12546+

>Gcaud1686.t1 ID=Gcaud1686.t1|Name=Gcaud1686.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=345bp|location=Sequence derived from alignment at NODE_857_length_16974_cov_176.431973:12202..12546+ (Gracilaria caudata M_176_S67 male)
ATGGCTGTTATTCAGTTTATTAAAGGAATTAATGAAACAGTTGTTGCTGA
TGTTTCTTTAACACGTTCCAGAGATGGAAGTAAAGGTACGGCAACATTTA
GATTTAATAATCCAGATATTTTAAGGTCTGGTATGGAAAATAAAGGAGAT
ATTACAGGCATGTACTTACAAGATGATGAGGGTGAACTAATGACTAGGGA
TGTGAGTGCTAAATTTGTTAATGGCAAACCTCAAGCAATAGAAGCTATAT
ATATAATAAAAAATCCACAAGAATGGGATCGTTTTATGCGATTTATGGAA
AAATATGCTAATAGAAATAAGCTTTCTTTTACAAAAGCTAATTGA
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