Gcaud1712.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1712.t1
Unique NameGcaud1712.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length158
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_851_length_17024_cov_4.098683contigNODE_851_length_17024_cov_4.098683:14812..15285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1712Gcaud1712Gracilaria caudata M_176_S67 malegeneNODE_851_length_17024_cov_4.098683 14812..16188 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1712.t1.stop1Gcaud1712.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_851_length_17024_cov_4.098683 14812..14814 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1712.t1.CDS1Gcaud1712.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_851_length_17024_cov_4.098683 14812..15285 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1712.t1.exon1Gcaud1712.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_851_length_17024_cov_4.098683 14812..15285 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1712.t1.start1Gcaud1712.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_851_length_17024_cov_4.098683 15283..15285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1712.t1Gcaud1712.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_851_length_17024_cov_4.098683 14812..15285 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1712.t1 ID=Gcaud1712.t1|Name=Gcaud1712.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=158bp
MCVAFVYLGVVTYAQMLERERKWKEAQDDDDVLLKLDDEEFKRLTTPDPG
TDGSVILNSEPPPGEAQEEEQELKDEEKEFFGTEQGEVLKEEPPQTNAEG
EQQFERQVGPEQQHTEGGDVDADWHKLSDDEAIYSQSYTPDNQHKWKHLL
PKTEQTE*
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spliced messenger RNA

>Gcaud1712.t1 ID=Gcaud1712.t1|Name=Gcaud1712.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:14812..15285- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGTGGCGTTTGTGTATCTGGGCGTGGTGACGTACGCGCAGATGCT
GGAGAGAGAGCGCAAGTGGAAGGAAGCGCAGGATGACGACGACGTGTTGC
TCAAACTGGACGACGAGGAGTTTAAGCGACTGACCACGCCGGATCCGGGC
ACGGACGGCTCTGTGATTCTCAACAGTGAGCCGCCGCCGGGCGAGGCGCA
GGAGGAGGAGCAAGAGTTGAAGGACGAGGAAAAGGAGTTTTTCGGCACGG
AACAGGGTGAGGTGCTGAAGGAAGAGCCGCCGCAGACGAACGCAGAGGGG
GAGCAACAATTCGAAAGACAAGTGGGACCCGAACAACAGCACACCGAGGG
AGGCGATGTGGACGCCGACTGGCACAAGCTCAGCGACGACGAGGCGATTT
ACAGCCAAAGTTATACGCCGGACAACCAACACAAATGGAAACATCTTCTA
CCTAAAACTGAACAAACTGAATAA
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protein sequence of Gcaud1712.t1

>Gcaud1712.t1 ID=Gcaud1712.t1|Name=Gcaud1712.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=158bp
MCVAFVYLGVVTYAQMLERERKWKEAQDDDDVLLKLDDEEFKRLTTPDPG
TDGSVILNSEPPPGEAQEEEQELKDEEKEFFGTEQGEVLKEEPPQTNAEG
EQQFERQVGPEQQHTEGGDVDADWHKLSDDEAIYSQSYTPDNQHKWKHLL
PKTEQTE*
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mRNA from alignment at NODE_851_length_17024_cov_4.098683:14812..15285-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1712.t1 ID=Gcaud1712.t1|Name=Gcaud1712.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=474bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:14812..15285- (Gracilaria caudata M_176_S67 male)
ATGTGCGTGGCGTTTGTGTATCTGGGCGTGGTGACGTACGCGCAGATGCT
GGAGAGAGAGCGCAAGTGGAAGGAAGCGCAGGATGACGACGACGTGTTGC
TCAAACTGGACGACGAGGAGTTTAAGCGACTGACCACGCCGGATCCGGGC
ACGGACGGCTCTGTGATTCTCAACAGTGAGCCGCCGCCGGGCGAGGCGCA
GGAGGAGGAGCAAGAGTTGAAGGACGAGGAAAAGGAGTTTTTCGGCACGG
AACAGGGTGAGGTGCTGAAGGAAGAGCCGCCGCAGACGAACGCAGAGGGG
GAGCAACAATTCGAAAGACAAGTGGGACCCGAACAACAGCACACCGAGGG
AGGCGATGTGGACGCCGACTGGCACAAGCTCAGCGACGACGAGGCGATTT
ACAGCCAAAGTTATACGCCGGACAACCAACACAAATGGAAACATCTTCTA
CCTAAAACTGAACAAACTGAATAA
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Coding sequence (CDS) from alignment at NODE_851_length_17024_cov_4.098683:14812..15285-

>Gcaud1712.t1 ID=Gcaud1712.t1|Name=Gcaud1712.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=474bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:14812..15285- (Gracilaria caudata M_176_S67 male)
ATGTGCGTGGCGTTTGTGTATCTGGGCGTGGTGACGTACGCGCAGATGCT
GGAGAGAGAGCGCAAGTGGAAGGAAGCGCAGGATGACGACGACGTGTTGC
TCAAACTGGACGACGAGGAGTTTAAGCGACTGACCACGCCGGATCCGGGC
ACGGACGGCTCTGTGATTCTCAACAGTGAGCCGCCGCCGGGCGAGGCGCA
GGAGGAGGAGCAAGAGTTGAAGGACGAGGAAAAGGAGTTTTTCGGCACGG
AACAGGGTGAGGTGCTGAAGGAAGAGCCGCCGCAGACGAACGCAGAGGGG
GAGCAACAATTCGAAAGACAAGTGGGACCCGAACAACAGCACACCGAGGG
AGGCGATGTGGACGCCGACTGGCACAAGCTCAGCGACGACGAGGCGATTT
ACAGCCAAAGTTATACGCCGGACAACCAACACAAATGGAAACATCTTCTA
CCTAAAACTGAACAAACTGAATAA
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