Gcaud1712.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud1712.t1
Unique NameGcaud1712.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length158
Homology
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BLAST of Gcaud1712.t1 vs. uniprot
Match: A0A2V3IZZ8_9FLOR (Translocase of chloroplast 33, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZZ8_9FLOR)

HSP 1 Score: 100 bits (250), Expect = 7.670e-22
Identity = 52/82 (63.41%), Postives = 62/82 (75.61%), Query Frame = 0 
Query:    6 VYLGVVTYAQMLERERKWKEAQDDDDVLLKLDDEEFKRLTTPDPGTDGSVILNSEPPPGEAQEXXQELKDEEKEFFGTEQGE 87
            VY+G+V Y ++ ER RKWKEAQDDD VLL+LDDEE++RLT PD GTDGSVIL S    G  +E  +ELKD EKEFFG  + E
Sbjct:  446 VYVGMVVYLKVEERRRKWKEAQDDDSVLLELDDEEYERLTKPDEGTDGSVILES----GPIREEEEELKDAEKEFFGVRERE 523
The following BLAST results are available for this feature:
BLAST of Gcaud1712.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IZZ8_9FLOR7.670e-2263.41Translocase of chloroplast 33, chloroplastic n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..157
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..157
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..14

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_851_length_17024_cov_4.098683contigNODE_851_length_17024_cov_4.098683:14812..15285 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1712.t1Gcaud1712.t1Gracilaria caudata M_176_S67 malemRNANODE_851_length_17024_cov_4.098683 14812..15285 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud1712.t1 ID=Gcaud1712.t1|Name=Gcaud1712.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=158bp
MCVAFVYLGVVTYAQMLERERKWKEAQDDDDVLLKLDDEEFKRLTTPDPG
TDGSVILNSEPPPGEAQEEEQELKDEEKEFFGTEQGEVLKEEPPQTNAEG
EQQFERQVGPEQQHTEGGDVDADWHKLSDDEAIYSQSYTPDNQHKWKHLL
PKTEQTE*
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