Gcaud1711.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud1711.t1
Unique NameGcaud1711.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_851_length_17024_cov_4.098683contigNODE_851_length_17024_cov_4.098683:14120..14725 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4098.XP_009598570.1
PFAMsSYS1
Max annot lvl35493|Streptophyta
KEGG koko:K20318
Evalue1.46e-22
EggNOG OGsKOG4697@1|root,KOG4697@2759|Eukaryota,37U39@33090|Viridiplantae,3GI4T@35493|Streptophyta,44RHJ@71274|asterids
DescriptionProtein SYS1 homolog isoform X1
COG categoryU
BRITEko00000,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud1711Gcaud1711Gracilaria caudata M_176_S67 malegeneNODE_851_length_17024_cov_4.098683 14120..14725 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1711.t1.start1Gcaud1711.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_851_length_17024_cov_4.098683 14120..14122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1711.t1.CDS1Gcaud1711.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_851_length_17024_cov_4.098683 14120..14725 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1711.t1.exon1Gcaud1711.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_851_length_17024_cov_4.098683 14120..14725 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1711.t1.stop1Gcaud1711.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_851_length_17024_cov_4.098683 14723..14725 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud1711.t1Gcaud1711.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_851_length_17024_cov_4.098683 14120..14725 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud1711.t1 ID=Gcaud1711.t1|Name=Gcaud1711.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=202bp
MAVNGSFYGRERFDPILILAQIVLLQACFYTSYLVLLVIFNYATGTTTSI
TDQIFNHAYVTLRHFPGWVSCTALLISACGPAAVAFVALVGRAKRCVDFA
CTLFVSHVIATTVHSGFPNTLMWWMLNVIATAGLATVGEAISLRVELREI
ALPRDDNRRADNAKNSTDLEAALNDDAHPAASSTTTTKSAQIESIALTQP
V*
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spliced messenger RNA

>Gcaud1711.t1 ID=Gcaud1711.t1|Name=Gcaud1711.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=606bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:14120..14725+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGTCAACGGCTCCTTCTACGGGCGCGAGCGCTTCGACCCCATCCT
CATCCTCGCCCAAATCGTGCTGCTGCAGGCGTGTTTCTACACGTCGTACC
TGGTGCTGCTGGTCATCTTCAACTACGCCACCGGCACCACCACCTCCATC
ACCGACCAGATTTTCAACCACGCGTACGTCACGCTGCGCCACTTTCCCGG
CTGGGTCAGCTGCACCGCGCTGCTCATCTCTGCGTGCGGCCCCGCCGCCG
TCGCGTTCGTGGCGTTGGTCGGGCGTGCCAAGCGCTGCGTGGACTTTGCG
TGCACGCTGTTCGTCTCGCACGTCATTGCCACCACCGTGCACTCCGGCTT
CCCCAACACGCTCATGTGGTGGATGCTCAACGTGATTGCCACCGCCGGGC
TGGCCACCGTGGGCGAGGCCATCAGTTTGCGCGTGGAGCTTCGCGAAATT
GCGCTGCCGAGGGATGACAACAGACGCGCCGACAACGCCAAGAACTCCAC
CGATCTGGAGGCCGCCTTGAACGATGACGCGCATCCGGCAGCGTCGTCCA
CCACCACCACCAAGTCGGCACAAATTGAATCCATTGCGCTCACGCAGCCT
GTATGA
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protein sequence of Gcaud1711.t1

>Gcaud1711.t1 ID=Gcaud1711.t1|Name=Gcaud1711.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=202bp
MAVNGSFYGRERFDPILILAQIVLLQACFYTSYLVLLVIFNYATGTTTSI
TDQIFNHAYVTLRHFPGWVSCTALLISACGPAAVAFVALVGRAKRCVDFA
CTLFVSHVIATTVHSGFPNTLMWWMLNVIATAGLATVGEAISLRVELREI
ALPRDDNRRADNAKNSTDLEAALNDDAHPAASSTTTTKSAQIESIALTQP
V*
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mRNA from alignment at NODE_851_length_17024_cov_4.098683:14120..14725+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud1711.t1 ID=Gcaud1711.t1|Name=Gcaud1711.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=606bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:14120..14725+ (Gracilaria caudata M_176_S67 male)
ATGGCCGTCAACGGCTCCTTCTACGGGCGCGAGCGCTTCGACCCCATCCT
CATCCTCGCCCAAATCGTGCTGCTGCAGGCGTGTTTCTACACGTCGTACC
TGGTGCTGCTGGTCATCTTCAACTACGCCACCGGCACCACCACCTCCATC
ACCGACCAGATTTTCAACCACGCGTACGTCACGCTGCGCCACTTTCCCGG
CTGGGTCAGCTGCACCGCGCTGCTCATCTCTGCGTGCGGCCCCGCCGCCG
TCGCGTTCGTGGCGTTGGTCGGGCGTGCCAAGCGCTGCGTGGACTTTGCG
TGCACGCTGTTCGTCTCGCACGTCATTGCCACCACCGTGCACTCCGGCTT
CCCCAACACGCTCATGTGGTGGATGCTCAACGTGATTGCCACCGCCGGGC
TGGCCACCGTGGGCGAGGCCATCAGTTTGCGCGTGGAGCTTCGCGAAATT
GCGCTGCCGAGGGATGACAACAGACGCGCCGACAACGCCAAGAACTCCAC
CGATCTGGAGGCCGCCTTGAACGATGACGCGCATCCGGCAGCGTCGTCCA
CCACCACCACCAAGTCGGCACAAATTGAATCCATTGCGCTCACGCAGCCT
GTATGA
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Coding sequence (CDS) from alignment at NODE_851_length_17024_cov_4.098683:14120..14725+

>Gcaud1711.t1 ID=Gcaud1711.t1|Name=Gcaud1711.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=606bp|location=Sequence derived from alignment at NODE_851_length_17024_cov_4.098683:14120..14725+ (Gracilaria caudata M_176_S67 male)
ATGGCCGTCAACGGCTCCTTCTACGGGCGCGAGCGCTTCGACCCCATCCT
CATCCTCGCCCAAATCGTGCTGCTGCAGGCGTGTTTCTACACGTCGTACC
TGGTGCTGCTGGTCATCTTCAACTACGCCACCGGCACCACCACCTCCATC
ACCGACCAGATTTTCAACCACGCGTACGTCACGCTGCGCCACTTTCCCGG
CTGGGTCAGCTGCACCGCGCTGCTCATCTCTGCGTGCGGCCCCGCCGCCG
TCGCGTTCGTGGCGTTGGTCGGGCGTGCCAAGCGCTGCGTGGACTTTGCG
TGCACGCTGTTCGTCTCGCACGTCATTGCCACCACCGTGCACTCCGGCTT
CCCCAACACGCTCATGTGGTGGATGCTCAACGTGATTGCCACCGCCGGGC
TGGCCACCGTGGGCGAGGCCATCAGTTTGCGCGTGGAGCTTCGCGAAATT
GCGCTGCCGAGGGATGACAACAGACGCGCCGACAACGCCAAGAACTCCAC
CGATCTGGAGGCCGCCTTGAACGATGACGCGCATCCGGCAGCGTCGTCCA
CCACCACCACCAAGTCGGCACAAATTGAATCCATTGCGCTCACGCAGCCT
GTATGA
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