Gcaud3287.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud3287.t1
Unique NameGcaud3287.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length82
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_84_length_54915_cov_4.457829contigNODE_84_length_54915_cov_4.457829:25556..25960 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog225400.XP_006777352.1
Preferred nameLSM10
PFAMsLSM
Max annot lvl33208|Metazoa
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005683,GO:0007346,GO:0008150,GO:0010564,GO:0015030,GO:0016604,GO:0017069,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045787,GO:0045931,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0071208,GO:0071209,GO:0090068,GO:0097159,GO:0120114,GO:1900087,GO:1901363,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902806,GO:1902808,GO:1990904,GO:2000045
Evalue7.15e-06
EggNOG OGsCOG1958@1|root,KOG3428@2759|Eukaryota,3A8FY@33154|Opisthokonta,3BTXX@33208|Metazoa,3DAQD@33213|Bilateria,48R38@7711|Chordata,49MP8@7742|Vertebrata,3JPZ1@40674|Mammalia,4M5EX@9397|Chiroptera
DescriptionLSM domain
COG categoryA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3287Gcaud3287Gracilaria caudata M_176_S67 malegeneNODE_84_length_54915_cov_4.457829 25556..25960 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3287.t1Gcaud3287.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_84_length_54915_cov_4.457829 25556..25960 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3287.t1.stop1Gcaud3287.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_84_length_54915_cov_4.457829 25556..25558 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3287.t1.CDS1Gcaud3287.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_84_length_54915_cov_4.457829 25556..25615 -
Gcaud3287.t1.CDS2Gcaud3287.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_84_length_54915_cov_4.457829 25686..25842 -
Gcaud3287.t1.CDS3Gcaud3287.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_84_length_54915_cov_4.457829 25932..25960 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3287.t1.exon1Gcaud3287.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_84_length_54915_cov_4.457829 25556..25615 -
Gcaud3287.t1.exon2Gcaud3287.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_84_length_54915_cov_4.457829 25686..25842 -
Gcaud3287.t1.exon3Gcaud3287.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_84_length_54915_cov_4.457829 25932..25960 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3287.t1.intron1Gcaud3287.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_84_length_54915_cov_4.457829 25616..25685 -
Gcaud3287.t1.intron2Gcaud3287.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_84_length_54915_cov_4.457829 25843..25931 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud3287.t1.start1Gcaud3287.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_84_length_54915_cov_4.457829 25958..25960 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud3287.t1 ID=Gcaud3287.t1|Name=Gcaud3287.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=82bp
MLDSVDTNMNVTISNASYATPSQQDAKATASFSFDLVYIAARHITFVHIP
EDVNVWETMEIHARRLETVRYASSGGKRRRK*
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spliced messenger RNA

>Gcaud3287.t1 ID=Gcaud3287.t1|Name=Gcaud3287.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=246bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:25556..25960- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGACTCAGTGGATACGAACATGAATGTGACAATATCAAATGCATC
TTATGCAACACCATCACAACAAGACGCCAAAGCCACCGCATCCTTTTCTT
TTGATCTTGTCTACATTGCAGCGAGACACATAACATTCGTTCACATTCCA
GAAGATGTTAACGTTTGGGAAACGATGGAAATTCATGCAAGACGACTGGA
AACCGTCAGATATGCGAGTTCTGGGGGCAAGCGGAGAAGAAAGTAG
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protein sequence of Gcaud3287.t1

>Gcaud3287.t1 ID=Gcaud3287.t1|Name=Gcaud3287.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=82bp
MLDSVDTNMNVTISNASYATPSQQDAKATASFSFDLVYIAARHITFVHIP
EDVNVWETMEIHARRLETVRYASSGGKRRRK*
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mRNA from alignment at NODE_84_length_54915_cov_4.457829:25556..25960-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud3287.t1 ID=Gcaud3287.t1|Name=Gcaud3287.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=405bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:25556..25960- (Gracilaria caudata M_176_S67 male)
ATGCTTGACTCAGTGGATACGAACATGAAGTAAAGTAGTCTGTCTTCTTC
TACGACAGTTAATGGTGGCTTGATTCAACAGTTAAAACTAACCCTTAATC
CTCGTCTGTTCGAACCAGTGTGACAATATCAAATGCATCTTATGCAACAC
CATCACAACAAGACGCCAAAGCCACCGCATCCTTTTCTTTTGATCTTGTC
TACATTGCAGCGAGACACATAACATTCGTTCACATTCCAGAAGATGTTAA
CGTTTGGGAAACGATGGAAATTCATGTAAGTCCTCTGCAAACTTTTTGGA
TACCAAGTGTACCAAAATTGGACTAACCACGTCAAGAACTTTTAGGCAAG
ACGACTGGAAACCGTCAGATATGCGAGTTCTGGGGGCAAGCGGAGAAGAA
AGTAG
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Coding sequence (CDS) from alignment at NODE_84_length_54915_cov_4.457829:25556..25960-

>Gcaud3287.t1 ID=Gcaud3287.t1|Name=Gcaud3287.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=246bp|location=Sequence derived from alignment at NODE_84_length_54915_cov_4.457829:25556..25960- (Gracilaria caudata M_176_S67 male)
ATGCTTGACTCAGTGGATACGAACATGAATGTGACAATATCAAATGCATC
TTATGCAACACCATCACAACAAGACGCCAAAGCCACCGCATCCTTTTCTT
TTGATCTTGTCTACATTGCAGCGAGACACATAACATTCGTTCACATTCCA
GAAGATGTTAACGTTTGGGAAACGATGGAAATTCATGCAAGACGACTGGA
AACCGTCAGATATGCGAGTTCTGGGGGCAAGCGGAGAAGAAAGTAG
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