Gcaud3287.t1 (polypeptide) Gracilaria caudata M_176_S67 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGcaud3287.t1
Unique NameGcaud3287.t1
Typepolypeptide
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length82
Homology
[Close]
BLAST of Gcaud3287.t1 vs. uniprot
Match: A0A2V3J738_9FLOR (U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J738_9FLOR)

HSP 1 Score: 62.8 bits (151), Expect = 5.210e-11
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 0 
Query:    2 LDSVDTNMNVTISNASYATPS----QQDAKATASFSFDLVYIAARHITFVHIPEDVNVWETMEIH 62
            L+SVD NMNVTI++A +         +D +  AS  F+L+Y+A+RHITF+ IP+DVNV ETM+I+
Sbjct:   36 LESVDQNMNVTIAHALWNCGQLGSLTKDRENVASVCFELLYVASRHITFIQIPDDVNVSETMDIY 100
The following BLAST results are available for this feature:
BLAST of Gcaud3287.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J738_9FLOR5.210e-1150.77U7 snRNA-associated Sm-like protein LSm10 n=1 Tax=... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 1..62
e-value: 2.9E-8
score: 35.2
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 2..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_84_length_54915_cov_4.457829contigNODE_84_length_54915_cov_4.457829:25556..25960 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud3287.t1Gcaud3287.t1Gracilaria caudata M_176_S67 malemRNANODE_84_length_54915_cov_4.457829 25556..25960 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gcaud3287.t1 ID=Gcaud3287.t1|Name=Gcaud3287.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=82bp
MLDSVDTNMNVTISNASYATPSQQDAKATASFSFDLVYIAARHITFVHIP
EDVNVWETMEIHARRLETVRYASSGGKRRRK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf