Gcaud1443.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud1443.t1
Unique Name	Gcaud1443.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	338

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1021_length_14946_cov_4.146752	contig	NODE_1021_length_14946_cov_4.146752:2193..3206 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1487953.JMKF01000059_gene4932
PFAMs	DUF1818
Max annot lvl	1117\|Cyanobacteria
Evalue	6.75e-12
EggNOG OGs	2CK5Z@1\|root,316YV@2\|Bacteria,1G6Q6@1117\|Cyanobacteria,1HBJP@1150\|Oscillatoriales
Description	Domain of unknown function (DUF1818)
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud1443	Gcaud1443	Gracilaria caudata M_176_S67 male	gene	NODE_1021_length_14946_cov_4.146752 2193..3206 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1443.t1.stop1	Gcaud1443.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1021_length_14946_cov_4.146752 2193..2195 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1443.t1.CDS1	Gcaud1443.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1021_length_14946_cov_4.146752 2193..3206 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1443.t1.exon1	Gcaud1443.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1021_length_14946_cov_4.146752 2193..3206 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1443.t1.start1	Gcaud1443.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1021_length_14946_cov_4.146752 3204..3206 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud1443.t1	Gcaud1443.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1021_length_14946_cov_4.146752 2193..3206 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1021_length_14946_cov_4.146752:2193..3206-
coding sequence from alignment at NODE_1021_length_14946_cov_4.146752:2193..3206-

mRNA sequence

>Gcaud1443.t1 ID=Gcaud1443.t1|Name=Gcaud1443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=338bp
MANAFLPPAPITSRSRYVTPALCQSVRLAARSTRVRWSCCSSVDPVEAAV
AEGETLRRQLEDISESRREQAERTNEALMKMASQISAITAKLRADAGMPP
VADPPPASAAVDSSAAAPPVVSDDDASAASDEPYMDPKNFGYESTAGWQV
LEASDDLPENERNLRFRIECDMHGCSLIEVKGDVPPGPGVRQKFIQSGVG
FRVGFDPEAPKSFCAMVGNDQWLVALGYDEIRHFKRLCLSLQKRMDRIGR
GEEDPPIKKPAVRRSGDGMFNMRVARAGLDCSVEHESKLVWTQALGQPSP
GKYCIRAIFMEGRQSECFWASETVPNLLAALNKLRIE*

spliced messenger RNA

>Gcaud1443.t1 ID=Gcaud1443.t1|Name=Gcaud1443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:2193..3206- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGAACGCGTTCTTACCGCCCGCTCCCATCACCTCGCGCTCGCGGTA
TGTAACGCCCGCCCTTTGTCAGTCTGTACGGCTTGCCGCGCGGTCGACGC
GCGTGCGCTGGAGCTGCTGTTCGTCTGTGGATCCGGTTGAAGCGGCGGTG
GCGGAAGGAGAGACATTGCGTCGACAGTTGGAGGATATCTCTGAGAGTCG
TCGCGAACAGGCGGAGCGAACTAATGAAGCTTTGATGAAGATGGCTTCTC
AGATCTCCGCTATCACCGCCAAGTTGCGTGCGGACGCCGGCATGCCGCCG
GTAGCCGATCCGCCGCCAGCCAGCGCCGCCGTGGATAGTTCAGCTGCCGC
CCCGCCCGTTGTTTCGGACGACGATGCTTCTGCGGCTTCGGATGAGCCTT
ACATGGATCCGAAGAATTTTGGGTACGAGTCTACCGCCGGGTGGCAGGTG
CTCGAGGCTAGTGACGATTTGCCGGAGAATGAGCGCAACTTGCGGTTCCG
CATTGAGTGCGACATGCATGGCTGCTCGCTCATTGAGGTGAAGGGTGACG
TCCCGCCCGGGCCGGGTGTTCGACAGAAGTTTATTCAATCGGGTGTTGGC
TTTCGGGTTGGCTTTGATCCGGAGGCACCGAAGAGTTTCTGTGCGATGGT
TGGAAATGATCAGTGGCTTGTTGCTCTTGGTTACGACGAAATTCGTCACT
TCAAACGTCTTTGCCTTTCGTTGCAGAAGAGGATGGATCGCATTGGACGC
GGTGAAGAGGACCCTCCCATCAAGAAGCCGGCTGTAAGGAGGAGTGGTGA
TGGCATGTTCAATATGAGGGTTGCAAGGGCGGGGCTGGATTGCTCTGTCG
AACATGAATCTAAGCTAGTATGGACCCAAGCACTTGGACAGCCCTCTCCT
GGCAAGTATTGCATAAGGGCTATCTTTATGGAGGGTAGACAGAGTGAATG
TTTCTGGGCTAGTGAGACTGTGCCGAACTTGCTGGCTGCCTTAAATAAGT
TAAGAATTGAATAA

protein sequence of Gcaud1443.t1

>Gcaud1443.t1 ID=Gcaud1443.t1|Name=Gcaud1443.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=338bp
MANAFLPPAPITSRSRYVTPALCQSVRLAARSTRVRWSCCSSVDPVEAAV
AEGETLRRQLEDISESRREQAERTNEALMKMASQISAITAKLRADAGMPP
VADPPPASAAVDSSAAAPPVVSDDDASAASDEPYMDPKNFGYESTAGWQV
LEASDDLPENERNLRFRIECDMHGCSLIEVKGDVPPGPGVRQKFIQSGVG
FRVGFDPEAPKSFCAMVGNDQWLVALGYDEIRHFKRLCLSLQKRMDRIGR
GEEDPPIKKPAVRRSGDGMFNMRVARAGLDCSVEHESKLVWTQALGQPSP
GKYCIRAIFMEGRQSECFWASETVPNLLAALNKLRIE*

mRNA from alignment at NODE_1021_length_14946_cov_4.146752:2193..3206-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud1443.t1 ID=Gcaud1443.t1|Name=Gcaud1443.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1014bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:2193..3206- (Gracilaria caudata M_176_S67 male)
ATGGCGAACGCGTTCTTACCGCCCGCTCCCATCACCTCGCGCTCGCGGTA
TGTAACGCCCGCCCTTTGTCAGTCTGTACGGCTTGCCGCGCGGTCGACGC
GCGTGCGCTGGAGCTGCTGTTCGTCTGTGGATCCGGTTGAAGCGGCGGTG
GCGGAAGGAGAGACATTGCGTCGACAGTTGGAGGATATCTCTGAGAGTCG
TCGCGAACAGGCGGAGCGAACTAATGAAGCTTTGATGAAGATGGCTTCTC
AGATCTCCGCTATCACCGCCAAGTTGCGTGCGGACGCCGGCATGCCGCCG
GTAGCCGATCCGCCGCCAGCCAGCGCCGCCGTGGATAGTTCAGCTGCCGC
CCCGCCCGTTGTTTCGGACGACGATGCTTCTGCGGCTTCGGATGAGCCTT
ACATGGATCCGAAGAATTTTGGGTACGAGTCTACCGCCGGGTGGCAGGTG
CTCGAGGCTAGTGACGATTTGCCGGAGAATGAGCGCAACTTGCGGTTCCG
CATTGAGTGCGACATGCATGGCTGCTCGCTCATTGAGGTGAAGGGTGACG
TCCCGCCCGGGCCGGGTGTTCGACAGAAGTTTATTCAATCGGGTGTTGGC
TTTCGGGTTGGCTTTGATCCGGAGGCACCGAAGAGTTTCTGTGCGATGGT
TGGAAATGATCAGTGGCTTGTTGCTCTTGGTTACGACGAAATTCGTCACT
TCAAACGTCTTTGCCTTTCGTTGCAGAAGAGGATGGATCGCATTGGACGC
GGTGAAGAGGACCCTCCCATCAAGAAGCCGGCTGTAAGGAGGAGTGGTGA
TGGCATGTTCAATATGAGGGTTGCAAGGGCGGGGCTGGATTGCTCTGTCG
AACATGAATCTAAGCTAGTATGGACCCAAGCACTTGGACAGCCCTCTCCT
GGCAAGTATTGCATAAGGGCTATCTTTATGGAGGGTAGACAGAGTGAATG
TTTCTGGGCTAGTGAGACTGTGCCGAACTTGCTGGCTGCCTTAAATAAGT
TAAGAATTGAATAA

Coding sequence (CDS) from alignment at NODE_1021_length_14946_cov_4.146752:2193..3206-

>Gcaud1443.t1 ID=Gcaud1443.t1|Name=Gcaud1443.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1014bp|location=Sequence derived from alignment at NODE_1021_length_14946_cov_4.146752:2193..3206- (Gracilaria caudata M_176_S67 male)
ATGGCGAACGCGTTCTTACCGCCCGCTCCCATCACCTCGCGCTCGCGGTA
TGTAACGCCCGCCCTTTGTCAGTCTGTACGGCTTGCCGCGCGGTCGACGC
GCGTGCGCTGGAGCTGCTGTTCGTCTGTGGATCCGGTTGAAGCGGCGGTG
GCGGAAGGAGAGACATTGCGTCGACAGTTGGAGGATATCTCTGAGAGTCG
TCGCGAACAGGCGGAGCGAACTAATGAAGCTTTGATGAAGATGGCTTCTC
AGATCTCCGCTATCACCGCCAAGTTGCGTGCGGACGCCGGCATGCCGCCG
GTAGCCGATCCGCCGCCAGCCAGCGCCGCCGTGGATAGTTCAGCTGCCGC
CCCGCCCGTTGTTTCGGACGACGATGCTTCTGCGGCTTCGGATGAGCCTT
ACATGGATCCGAAGAATTTTGGGTACGAGTCTACCGCCGGGTGGCAGGTG
CTCGAGGCTAGTGACGATTTGCCGGAGAATGAGCGCAACTTGCGGTTCCG
CATTGAGTGCGACATGCATGGCTGCTCGCTCATTGAGGTGAAGGGTGACG
TCCCGCCCGGGCCGGGTGTTCGACAGAAGTTTATTCAATCGGGTGTTGGC
TTTCGGGTTGGCTTTGATCCGGAGGCACCGAAGAGTTTCTGTGCGATGGT
TGGAAATGATCAGTGGCTTGTTGCTCTTGGTTACGACGAAATTCGTCACT
TCAAACGTCTTTGCCTTTCGTTGCAGAAGAGGATGGATCGCATTGGACGC
GGTGAAGAGGACCCTCCCATCAAGAAGCCGGCTGTAAGGAGGAGTGGTGA
TGGCATGTTCAATATGAGGGTTGCAAGGGCGGGGCTGGATTGCTCTGTCG
AACATGAATCTAAGCTAGTATGGACCCAAGCACTTGGACAGCCCTCTCCT
GGCAAGTATTGCATAAGGGCTATCTTTATGGAGGGTAGACAGAGTGAATG
TTTCTGGGCTAGTGAGACTGTGCCGAACTTGCTGGCTGCCTTAAATAAGT
TAAGAATTGAATAA