Gcaud2732.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud2732.t1
Unique NameGcaud2732.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_835_length_17303_cov_4.798745contigNODE_835_length_17303_cov_4.798745:2014..3453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud2732Gcaud2732Gracilaria caudata M_176_S67 malegeneNODE_835_length_17303_cov_4.798745 2014..3453 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2732.t1.stop1Gcaud2732.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_835_length_17303_cov_4.798745 2014..2016 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2732.t1.CDS1Gcaud2732.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_835_length_17303_cov_4.798745 2014..3453 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2732.t1.exon1Gcaud2732.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_835_length_17303_cov_4.798745 2014..3453 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2732.t1.start1Gcaud2732.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_835_length_17303_cov_4.798745 3451..3453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud2732.t1Gcaud2732.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_835_length_17303_cov_4.798745 2014..3453 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud2732.t1 ID=Gcaud2732.t1|Name=Gcaud2732.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=480bp
MILIPFGNGVVAAFIFLVFEILVFPLLFYVTSKIASLLLYWSALKGIVVL
VDSMKFPLWSEGLTRHQLSHVPLLAVRVILLAIPVYLETTLSSRDVPQMV
SRTVENAFIPEPADDWFSYQNRSGEDIDPLRHVGERIFFSCTSMDEEGWV
WARVANITYLPNDRLRIRCVSDTEKAVYRLTEKVVNVGSENARDFLAVRI
SWTEGRVKDFPQPLVVQKNLWEEPHPNETAYRIHSVRALNDSAMQCFFED
SVKTSSVFGTKASGEELRGWCQKEEKTKEETKGVAFYVLKLDMAQLEDGS
VTGTCGGSCKLSTRNRSIVAVIEYRGSFEFKDKVLLGAKHMANMQPKWTS
TARAMDIARFVLYSKMTNVTVNIRSGNVKAMTEVEAKAIITGAFEVVFVL
VCALVLACEWRRKWRHVQQPNTVNGLSKCWAEAEENWGGVGSKWISLSLP
TSGSEGDSLPGFEPCRTKRESASQTRNGS*
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spliced messenger RNA

>Gcaud2732.t1 ID=Gcaud2732.t1|Name=Gcaud2732.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_835_length_17303_cov_4.798745:2014..3453- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCTGATTCCGTTCGGAAATGGAGTCGTGGCCGCCTTCATCTTTCT
GGTTTTCGAAATCCTGGTCTTTCCTCTTCTGTTTTATGTCACCTCCAAAA
TCGCATCTTTGCTTCTATATTGGAGCGCCCTGAAGGGAATTGTTGTACTA
GTAGACAGCATGAAGTTCCCTCTCTGGAGCGAGGGACTTACTCGTCACCA
ACTCTCGCATGTTCCCCTCCTCGCTGTTCGAGTTATCCTTCTCGCTATCC
CTGTGTATCTCGAAACAACACTGAGCTCCAGAGACGTACCGCAAATGGTG
TCCAGAACAGTGGAGAACGCATTCATCCCAGAGCCAGCCGATGATTGGTT
CAGCTACCAAAATCGTTCAGGGGAAGACATTGATCCGCTCCGACACGTAG
GCGAAAGAATATTTTTCTCGTGCACCTCCATGGACGAGGAAGGATGGGTG
TGGGCAAGAGTTGCAAACATCACGTATCTTCCCAACGACCGCCTGCGCAT
ACGATGCGTGAGTGACACGGAGAAAGCAGTCTATCGACTGACGGAGAAAG
TGGTGAATGTTGGGTCGGAGAACGCTCGCGACTTTCTCGCTGTGAGAATA
TCTTGGACTGAGGGCCGTGTTAAAGACTTCCCACAACCACTGGTGGTGCA
AAAAAACCTGTGGGAAGAGCCACATCCCAACGAAACTGCATATCGAATAC
ACAGCGTGAGGGCCTTGAACGACTCAGCAATGCAATGTTTCTTCGAGGAC
AGCGTGAAGACTTCCTCCGTTTTCGGCACAAAGGCGTCTGGAGAGGAGTT
ACGTGGATGGTGTCAGAAAGAGGAGAAGACAAAGGAGGAAACGAAGGGGG
TTGCGTTTTACGTTCTAAAGCTTGACATGGCTCAGTTGGAGGATGGGAGT
GTGACAGGAACTTGTGGCGGCTCGTGCAAACTTAGTACTAGAAACCGGAG
CATTGTGGCTGTCATTGAGTACCGAGGCAGTTTTGAGTTCAAAGACAAGG
TTCTACTAGGTGCAAAGCATATGGCAAATATGCAACCGAAGTGGACTAGT
ACGGCTAGAGCCATGGATATTGCTCGATTTGTGTTGTACTCGAAGATGAC
GAACGTGACTGTCAACATCCGGTCCGGAAATGTGAAAGCCATGACAGAGG
TGGAAGCCAAGGCCATCATCACTGGGGCTTTTGAGGTAGTGTTTGTGTTG
GTATGCGCTTTGGTGCTTGCTTGCGAATGGAGAAGGAAATGGAGACACGT
TCAACAACCTAATACTGTGAACGGCCTTTCCAAATGCTGGGCAGAAGCTG
AAGAAAATTGGGGGGGAGTAGGGAGCAAGTGGATCAGTTTGAGTTTACCT
ACAAGTGGTTCTGAAGGAGATAGTCTGCCAGGATTCGAGCCATGCCGAAC
AAAGAGAGAGAGTGCTTCACAAACTCGAAATGGCTCTTGA
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protein sequence of Gcaud2732.t1

>Gcaud2732.t1 ID=Gcaud2732.t1|Name=Gcaud2732.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=480bp
MILIPFGNGVVAAFIFLVFEILVFPLLFYVTSKIASLLLYWSALKGIVVL
VDSMKFPLWSEGLTRHQLSHVPLLAVRVILLAIPVYLETTLSSRDVPQMV
SRTVENAFIPEPADDWFSYQNRSGEDIDPLRHVGERIFFSCTSMDEEGWV
WARVANITYLPNDRLRIRCVSDTEKAVYRLTEKVVNVGSENARDFLAVRI
SWTEGRVKDFPQPLVVQKNLWEEPHPNETAYRIHSVRALNDSAMQCFFED
SVKTSSVFGTKASGEELRGWCQKEEKTKEETKGVAFYVLKLDMAQLEDGS
VTGTCGGSCKLSTRNRSIVAVIEYRGSFEFKDKVLLGAKHMANMQPKWTS
TARAMDIARFVLYSKMTNVTVNIRSGNVKAMTEVEAKAIITGAFEVVFVL
VCALVLACEWRRKWRHVQQPNTVNGLSKCWAEAEENWGGVGSKWISLSLP
TSGSEGDSLPGFEPCRTKRESASQTRNGS*
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mRNA from alignment at NODE_835_length_17303_cov_4.798745:2014..3453-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud2732.t1 ID=Gcaud2732.t1|Name=Gcaud2732.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1440bp|location=Sequence derived from alignment at NODE_835_length_17303_cov_4.798745:2014..3453- (Gracilaria caudata M_176_S67 male)
ATGATCCTGATTCCGTTCGGAAATGGAGTCGTGGCCGCCTTCATCTTTCT
GGTTTTCGAAATCCTGGTCTTTCCTCTTCTGTTTTATGTCACCTCCAAAA
TCGCATCTTTGCTTCTATATTGGAGCGCCCTGAAGGGAATTGTTGTACTA
GTAGACAGCATGAAGTTCCCTCTCTGGAGCGAGGGACTTACTCGTCACCA
ACTCTCGCATGTTCCCCTCCTCGCTGTTCGAGTTATCCTTCTCGCTATCC
CTGTGTATCTCGAAACAACACTGAGCTCCAGAGACGTACCGCAAATGGTG
TCCAGAACAGTGGAGAACGCATTCATCCCAGAGCCAGCCGATGATTGGTT
CAGCTACCAAAATCGTTCAGGGGAAGACATTGATCCGCTCCGACACGTAG
GCGAAAGAATATTTTTCTCGTGCACCTCCATGGACGAGGAAGGATGGGTG
TGGGCAAGAGTTGCAAACATCACGTATCTTCCCAACGACCGCCTGCGCAT
ACGATGCGTGAGTGACACGGAGAAAGCAGTCTATCGACTGACGGAGAAAG
TGGTGAATGTTGGGTCGGAGAACGCTCGCGACTTTCTCGCTGTGAGAATA
TCTTGGACTGAGGGCCGTGTTAAAGACTTCCCACAACCACTGGTGGTGCA
AAAAAACCTGTGGGAAGAGCCACATCCCAACGAAACTGCATATCGAATAC
ACAGCGTGAGGGCCTTGAACGACTCAGCAATGCAATGTTTCTTCGAGGAC
AGCGTGAAGACTTCCTCCGTTTTCGGCACAAAGGCGTCTGGAGAGGAGTT
ACGTGGATGGTGTCAGAAAGAGGAGAAGACAAAGGAGGAAACGAAGGGGG
TTGCGTTTTACGTTCTAAAGCTTGACATGGCTCAGTTGGAGGATGGGAGT
GTGACAGGAACTTGTGGCGGCTCGTGCAAACTTAGTACTAGAAACCGGAG
CATTGTGGCTGTCATTGAGTACCGAGGCAGTTTTGAGTTCAAAGACAAGG
TTCTACTAGGTGCAAAGCATATGGCAAATATGCAACCGAAGTGGACTAGT
ACGGCTAGAGCCATGGATATTGCTCGATTTGTGTTGTACTCGAAGATGAC
GAACGTGACTGTCAACATCCGGTCCGGAAATGTGAAAGCCATGACAGAGG
TGGAAGCCAAGGCCATCATCACTGGGGCTTTTGAGGTAGTGTTTGTGTTG
GTATGCGCTTTGGTGCTTGCTTGCGAATGGAGAAGGAAATGGAGACACGT
TCAACAACCTAATACTGTGAACGGCCTTTCCAAATGCTGGGCAGAAGCTG
AAGAAAATTGGGGGGGAGTAGGGAGCAAGTGGATCAGTTTGAGTTTACCT
ACAAGTGGTTCTGAAGGAGATAGTCTGCCAGGATTCGAGCCATGCCGAAC
AAAGAGAGAGAGTGCTTCACAAACTCGAAATGGCTCTTGA
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Coding sequence (CDS) from alignment at NODE_835_length_17303_cov_4.798745:2014..3453-

>Gcaud2732.t1 ID=Gcaud2732.t1|Name=Gcaud2732.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1440bp|location=Sequence derived from alignment at NODE_835_length_17303_cov_4.798745:2014..3453- (Gracilaria caudata M_176_S67 male)
ATGATCCTGATTCCGTTCGGAAATGGAGTCGTGGCCGCCTTCATCTTTCT
GGTTTTCGAAATCCTGGTCTTTCCTCTTCTGTTTTATGTCACCTCCAAAA
TCGCATCTTTGCTTCTATATTGGAGCGCCCTGAAGGGAATTGTTGTACTA
GTAGACAGCATGAAGTTCCCTCTCTGGAGCGAGGGACTTACTCGTCACCA
ACTCTCGCATGTTCCCCTCCTCGCTGTTCGAGTTATCCTTCTCGCTATCC
CTGTGTATCTCGAAACAACACTGAGCTCCAGAGACGTACCGCAAATGGTG
TCCAGAACAGTGGAGAACGCATTCATCCCAGAGCCAGCCGATGATTGGTT
CAGCTACCAAAATCGTTCAGGGGAAGACATTGATCCGCTCCGACACGTAG
GCGAAAGAATATTTTTCTCGTGCACCTCCATGGACGAGGAAGGATGGGTG
TGGGCAAGAGTTGCAAACATCACGTATCTTCCCAACGACCGCCTGCGCAT
ACGATGCGTGAGTGACACGGAGAAAGCAGTCTATCGACTGACGGAGAAAG
TGGTGAATGTTGGGTCGGAGAACGCTCGCGACTTTCTCGCTGTGAGAATA
TCTTGGACTGAGGGCCGTGTTAAAGACTTCCCACAACCACTGGTGGTGCA
AAAAAACCTGTGGGAAGAGCCACATCCCAACGAAACTGCATATCGAATAC
ACAGCGTGAGGGCCTTGAACGACTCAGCAATGCAATGTTTCTTCGAGGAC
AGCGTGAAGACTTCCTCCGTTTTCGGCACAAAGGCGTCTGGAGAGGAGTT
ACGTGGATGGTGTCAGAAAGAGGAGAAGACAAAGGAGGAAACGAAGGGGG
TTGCGTTTTACGTTCTAAAGCTTGACATGGCTCAGTTGGAGGATGGGAGT
GTGACAGGAACTTGTGGCGGCTCGTGCAAACTTAGTACTAGAAACCGGAG
CATTGTGGCTGTCATTGAGTACCGAGGCAGTTTTGAGTTCAAAGACAAGG
TTCTACTAGGTGCAAAGCATATGGCAAATATGCAACCGAAGTGGACTAGT
ACGGCTAGAGCCATGGATATTGCTCGATTTGTGTTGTACTCGAAGATGAC
GAACGTGACTGTCAACATCCGGTCCGGAAATGTGAAAGCCATGACAGAGG
TGGAAGCCAAGGCCATCATCACTGGGGCTTTTGAGGTAGTGTTTGTGTTG
GTATGCGCTTTGGTGCTTGCTTGCGAATGGAGAAGGAAATGGAGACACGT
TCAACAACCTAATACTGTGAACGGCCTTTCCAAATGCTGGGCAGAAGCTG
AAGAAAATTGGGGGGGAGTAGGGAGCAAGTGGATCAGTTTGAGTTTACCT
ACAAGTGGTTCTGAAGGAGATAGTCTGCCAGGATTCGAGCCATGCCGAAC
AAAGAGAGAGAGTGCTTCACAAACTCGAAATGGCTCTTGA
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